This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 577 patients, 272 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF'.
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2p gain cnv correlated to 'CN_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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3q gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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4p gain cnv correlated to 'CN_CNMF'.
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4q gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'MRNA_CNMF'.
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6q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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7p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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8p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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9p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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9q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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11q gain cnv correlated to 'METHLYATION_CNMF'.
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12p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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12q gain cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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14q gain cnv correlated to 'MIR_CNMF'.
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15q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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16p gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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16q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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17p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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17q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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18p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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18q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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19p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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19q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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21q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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22q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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xq gain cnv correlated to 'MRNASEQ_CNMF'.
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1p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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2q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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3q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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4p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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4q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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5p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF'.
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6q loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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7p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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8q loss cnv correlated to 'MIR_CNMF'.
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9p loss cnv correlated to 'MRNA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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10p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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11p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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11q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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12p loss cnv correlated to 'CN_CNMF'.
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12q loss cnv correlated to 'CN_CNMF'.
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13q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF'.
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16q loss cnv correlated to 'CN_CNMF'.
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17p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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17q loss cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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18p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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18q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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19p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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19q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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20p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF'.
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xp loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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xq loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
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nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 468 (81%) | 109 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00029 (0.00207) |
1e-05 (0.000132) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0083 (0.036) |
0.00066 (0.00413) |
0.0155 (0.062) |
4e-05 (0.000381) |
7q gain | 474 (82%) | 103 |
2e-05 (0.000231) |
1e-05 (0.000132) |
0.00109 (0.00643) |
0.00015 (0.00116) |
1e-05 (0.000132) |
4e-05 (0.000381) |
0.345 (0.551) |
0.011 (0.0461) |
0.0542 (0.16) |
0.00162 (0.00892) |
10p loss | 483 (84%) | 94 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00999 (0.0429) |
7e-05 (0.000611) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.212 (0.391) |
0.00054 (0.00357) |
0.222 (0.407) |
0.0127 (0.0516) |
10q loss | 494 (86%) | 83 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00575 (0.0256) |
0.00011 (0.000902) |
1e-05 (0.000132) |
0.00015 (0.00116) |
0.323 (0.53) |
5e-05 (0.000461) |
0.261 (0.453) |
0.0218 (0.0804) |
15q loss | 106 (18%) | 471 |
4e-05 (0.000381) |
2e-05 (0.000231) |
0.00401 (0.0195) |
0.00358 (0.0175) |
1e-05 (0.000132) |
0.0754 (0.201) |
0.176 (0.35) |
0.0193 (0.0736) |
0.0034 (0.0167) |
0.0226 (0.0821) |
20p gain | 222 (38%) | 355 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00447 (0.0211) |
1e-05 (0.000132) |
4e-05 (0.000381) |
8e-05 (0.000691) |
0.35 (0.557) |
0.00047 (0.00319) |
0.796 (0.906) |
0.12 (0.274) |
20q gain | 220 (38%) | 357 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00283 (0.0144) |
1e-05 (0.000132) |
4e-05 (0.000381) |
1e-05 (0.000132) |
0.262 (0.453) |
0.00041 (0.00287) |
0.797 (0.906) |
0.119 (0.271) |
21q gain | 64 (11%) | 513 |
0.00116 (0.00665) |
0.00759 (0.0335) |
0.0107 (0.0448) |
0.00412 (0.0198) |
0.00017 (0.00128) |
0.00174 (0.00945) |
0.116 (0.267) |
0.755 (0.88) |
0.0179 (0.0705) |
0.328 (0.537) |
17p gain | 48 (8%) | 529 |
0.00047 (0.00319) |
0.0204 (0.0767) |
0.0783 (0.206) |
0.0393 (0.124) |
0.0002 (0.00146) |
0.034 (0.111) |
0.0255 (0.091) |
0.203 (0.382) |
0.339 (0.548) |
0.39 (0.596) |
19p gain | 226 (39%) | 351 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0902 (0.227) |
0.00028 (0.00201) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.206 (0.385) |
4e-05 (0.000381) |
0.189 (0.367) |
0.656 (0.806) |
19q gain | 199 (34%) | 378 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.142 (0.305) |
0.00324 (0.016) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.208 (0.388) |
0.0002 (0.00146) |
0.063 (0.176) |
0.344 (0.551) |
5q loss | 44 (8%) | 533 |
4e-05 (0.000381) |
2e-05 (0.000231) |
0.00092 (0.00555) |
0.187 (0.366) |
0.00015 (0.00116) |
1e-05 (0.000132) |
0.665 (0.809) |
0.0842 (0.216) |
0.224 (0.41) |
0.0421 (0.13) |
11p loss | 99 (17%) | 478 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.831 (0.923) |
0.0142 (0.0572) |
1e-05 (0.000132) |
0.00279 (0.0144) |
0.818 (0.92) |
0.0299 (0.101) |
0.0954 (0.236) |
0.0878 (0.222) |
13q loss | 186 (32%) | 391 |
6e-05 (0.000541) |
0.00177 (0.00948) |
0.75 (0.877) |
0.589 (0.758) |
1e-05 (0.000132) |
0.0115 (0.0477) |
0.521 (0.708) |
0.0271 (0.0947) |
0.0492 (0.148) |
0.401 (0.606) |
20p loss | 19 (3%) | 558 |
0.00017 (0.00128) |
2e-05 (0.000231) |
0.036 (0.115) |
0.0928 (0.232) |
2e-05 (0.000231) |
0.309 (0.512) |
0.0778 (0.206) |
0.453 (0.655) |
0.0105 (0.0442) |
0.00215 (0.0113) |
xp loss | 114 (20%) | 463 |
0.00306 (0.0155) |
0.0122 (0.0502) |
0.0423 (0.13) |
0.166 (0.334) |
1e-05 (0.000132) |
0.00011 (0.000902) |
0.0299 (0.101) |
0.462 (0.66) |
0.391 (0.596) |
0.831 (0.923) |
8q gain | 59 (10%) | 518 |
3e-05 (0.000324) |
2e-05 (0.000231) |
0.0401 (0.126) |
0.455 (0.655) |
1e-05 (0.000132) |
0.00052 (0.00347) |
0.276 (0.468) |
0.158 (0.323) |
0.123 (0.277) |
0.512 (0.707) |
10p gain | 13 (2%) | 564 |
0.00111 (0.00647) |
0.00013 (0.00105) |
0.118 (0.27) |
0.0583 (0.17) |
0.00098 (0.00582) |
0.0004 (0.00283) |
0.408 (0.612) |
0.00444 (0.021) |
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16q gain | 37 (6%) | 540 |
0.0183 (0.0714) |
0.0053 (0.0244) |
0.358 (0.568) |
0.0639 (0.178) |
5e-05 (0.000461) |
0.0263 (0.0925) |
0.023 (0.083) |
0.884 (0.963) |
0.42 (0.623) |
0.735 (0.863) |
18p gain | 58 (10%) | 519 |
1e-05 (0.000132) |
0.00063 (0.00397) |
0.155 (0.32) |
0.364 (0.569) |
1e-05 (0.000132) |
0.00506 (0.0234) |
0.439 (0.639) |
0.395 (0.599) |
0.0192 (0.0736) |
0.0987 (0.241) |
18q gain | 58 (10%) | 519 |
2e-05 (0.000231) |
0.00062 (0.00394) |
0.155 (0.32) |
0.431 (0.633) |
1e-05 (0.000132) |
0.00571 (0.0256) |
0.366 (0.57) |
0.612 (0.777) |
0.0189 (0.0733) |
0.112 (0.263) |
4q loss | 56 (10%) | 521 |
0.0008 (0.00493) |
0.00061 (0.00391) |
0.0188 (0.0731) |
0.155 (0.32) |
0.00017 (0.00128) |
0.00097 (0.00581) |
0.764 (0.889) |
0.398 (0.604) |
0.559 (0.737) |
1 (1.00) |
5p loss | 43 (7%) | 534 |
1e-05 (0.000132) |
2e-05 (0.000231) |
0.00178 (0.00948) |
0.0962 (0.237) |
3e-05 (0.000324) |
1e-05 (0.000132) |
0.8 (0.909) |
0.209 (0.389) |
0.344 (0.551) |
0.0523 (0.156) |
14q loss | 146 (25%) | 431 |
1e-05 (0.000132) |
0.00011 (0.000902) |
0.509 (0.707) |
0.539 (0.722) |
1e-05 (0.000132) |
0.0241 (0.0866) |
0.188 (0.366) |
0.0293 (0.101) |
0.163 (0.331) |
0.703 (0.838) |
19p loss | 27 (5%) | 550 |
0.00059 (0.00381) |
0.00132 (0.00746) |
0.0609 (0.175) |
0.436 (0.635) |
0.0136 (0.055) |
6e-05 (0.000541) |
0.0684 (0.187) |
0.036 (0.115) |
0.853 (0.943) |
0.668 (0.809) |
20q loss | 17 (3%) | 560 |
0.00142 (0.00792) |
0.00011 (0.000902) |
0.364 (0.569) |
0.269 (0.46) |
1e-05 (0.000132) |
0.312 (0.517) |
0.579 (0.749) |
0.454 (0.655) |
0.0402 (0.126) |
0.012 (0.0495) |
21q loss | 42 (7%) | 535 |
0.0206 (0.077) |
0.00124 (0.00706) |
0.0538 (0.159) |
0.26 (0.452) |
0.00058 (0.0038) |
0.00158 (0.00875) |
0.447 (0.647) |
0.0262 (0.0925) |
0.824 (0.921) |
1 (1.00) |
3p gain | 58 (10%) | 519 |
0.00044 (0.00303) |
0.0291 (0.1) |
0.671 (0.81) |
0.0263 (0.0925) |
1e-05 (0.000132) |
0.131 (0.289) |
0.988 (1.00) |
0.706 (0.838) |
0.814 (0.917) |
0.258 (0.451) |
6q gain | 23 (4%) | 554 |
0.0017 (0.00929) |
0.0356 (0.115) |
0.786 (0.906) |
0.104 (0.25) |
0.0247 (0.0886) |
0.0056 (0.0254) |
0.68 (0.818) |
0.669 (0.809) |
0.814 (0.917) |
1 (1.00) |
8p gain | 52 (9%) | 525 |
3e-05 (0.000324) |
0.00072 (0.00447) |
0.0624 (0.176) |
0.558 (0.737) |
1e-05 (0.000132) |
0.00416 (0.0198) |
0.278 (0.469) |
0.157 (0.32) |
0.138 (0.299) |
0.676 (0.814) |
17q gain | 60 (10%) | 517 |
0.00112 (0.00647) |
0.0466 (0.142) |
0.128 (0.283) |
0.0691 (0.188) |
1e-05 (0.000132) |
0.0373 (0.119) |
0.0582 (0.17) |
0.0609 (0.175) |
0.944 (1.00) |
0.617 (0.778) |
22q gain | 34 (6%) | 543 |
1e-05 (0.000132) |
0.00319 (0.0159) |
0.469 (0.666) |
0.218 (0.401) |
0.00011 (0.000902) |
0.144 (0.307) |
0.267 (0.457) |
0.0287 (0.0997) |
0.244 (0.433) |
0.193 (0.371) |
4p loss | 55 (10%) | 522 |
0.0809 (0.211) |
0.00317 (0.0158) |
0.0331 (0.109) |
0.227 (0.411) |
0.00217 (0.0113) |
0.00183 (0.00968) |
0.855 (0.943) |
0.336 (0.546) |
0.747 (0.875) |
1 (1.00) |
7p loss | 8 (1%) | 569 |
0.0222 (0.0812) |
0.0339 (0.111) |
0.455 (0.655) |
0.0409 (0.127) |
0.0157 (0.0627) |
|||||
17q loss | 41 (7%) | 536 |
0.00491 (0.0229) |
0.0618 (0.175) |
0.211 (0.391) |
0.0465 (0.142) |
1e-05 (0.000132) |
0.0367 (0.117) |
0.151 (0.316) |
1 (1.00) |
0.145 (0.309) |
0.108 (0.257) |
18p loss | 71 (12%) | 506 |
0.0472 (0.143) |
0.0321 (0.107) |
0.363 (0.569) |
0.218 (0.401) |
3e-05 (0.000324) |
0.504 (0.702) |
0.465 (0.662) |
0.0407 (0.127) |
0.134 (0.292) |
0.598 (0.765) |
19q loss | 35 (6%) | 542 |
0.00059 (0.00381) |
0.00472 (0.0221) |
0.413 (0.618) |
0.154 (0.319) |
0.00112 (0.00647) |
0.00083 (0.00504) |
0.203 (0.382) |
0.191 (0.369) |
0.929 (0.997) |
0.518 (0.708) |
xq loss | 106 (18%) | 471 |
0.0192 (0.0736) |
0.0159 (0.0631) |
0.112 (0.263) |
0.106 (0.254) |
1e-05 (0.000132) |
0.00532 (0.0244) |
0.115 (0.267) |
0.755 (0.88) |
0.413 (0.618) |
0.961 (1.00) |
9p gain | 47 (8%) | 530 |
0.00317 (0.0158) |
0.0297 (0.101) |
0.704 (0.838) |
0.433 (0.635) |
3e-05 (0.000324) |
0.545 (0.728) |
0.32 (0.527) |
0.706 (0.838) |
0.43 (0.633) |
0.113 (0.265) |
12q gain | 49 (8%) | 528 |
0.521 (0.708) |
0.954 (1.00) |
0.537 (0.721) |
0.0104 (0.0442) |
0.0014 (0.00786) |
0.592 (0.76) |
0.21 (0.391) |
0.525 (0.712) |
0.0224 (0.0818) |
0.122 (0.275) |
16p gain | 38 (7%) | 539 |
0.00785 (0.0344) |
0.0661 (0.182) |
0.415 (0.619) |
0.272 (0.463) |
1e-05 (0.000132) |
0.0317 (0.106) |
0.191 (0.369) |
0.662 (0.808) |
1 (1.00) |
1 (1.00) |
2p loss | 32 (6%) | 545 |
0.0309 (0.104) |
0.0271 (0.0947) |
0.265 (0.456) |
0.769 (0.891) |
1e-05 (0.000132) |
0.617 (0.778) |
0.114 (0.265) |
0.938 (1.00) |
0.242 (0.432) |
0.227 (0.411) |
2q loss | 32 (6%) | 545 |
0.0296 (0.101) |
0.0288 (0.0997) |
0.263 (0.453) |
0.767 (0.891) |
1e-05 (0.000132) |
0.614 (0.777) |
0.0661 (0.182) |
0.87 (0.956) |
0.0848 (0.217) |
0.0719 (0.194) |
3q loss | 34 (6%) | 543 |
0.23 (0.415) |
0.127 (0.282) |
0.513 (0.707) |
0.675 (0.814) |
2e-05 (0.000231) |
0.0348 (0.113) |
0.0337 (0.111) |
0.176 (0.35) |
0.889 (0.965) |
0.183 (0.36) |
9p loss | 202 (35%) | 375 |
0.00789 (0.0344) |
0.111 (0.262) |
0.55 (0.731) |
0.485 (0.684) |
0.597 (0.765) |
0.475 (0.672) |
0.138 (0.299) |
0.0992 (0.241) |
0.0221 (0.0812) |
0.00893 (0.0385) |
11q loss | 93 (16%) | 484 |
4e-05 (0.000381) |
0.0002 (0.00146) |
0.932 (0.999) |
0.0616 (0.175) |
1e-05 (0.000132) |
0.417 (0.621) |
0.335 (0.545) |
0.152 (0.318) |
0.346 (0.551) |
0.533 (0.719) |
17p loss | 65 (11%) | 512 |
0.0201 (0.0762) |
0.0202 (0.0762) |
0.652 (0.804) |
0.583 (0.752) |
1e-05 (0.000132) |
0.132 (0.291) |
0.53 (0.715) |
0.211 (0.391) |
0.304 (0.505) |
0.703 (0.838) |
18q loss | 62 (11%) | 515 |
0.146 (0.309) |
0.00738 (0.0327) |
0.62 (0.778) |
0.241 (0.43) |
0.00015 (0.00116) |
0.476 (0.672) |
0.705 (0.838) |
0.00282 (0.0144) |
0.418 (0.622) |
0.121 (0.274) |
3q gain | 64 (11%) | 513 |
0.0005 (0.00336) |
0.0626 (0.176) |
0.899 (0.971) |
0.0625 (0.176) |
1e-05 (0.000132) |
0.0644 (0.178) |
0.813 (0.917) |
1 (1.00) |
0.518 (0.708) |
0.151 (0.316) |
12p gain | 60 (10%) | 517 |
0.668 (0.809) |
0.792 (0.906) |
0.646 (0.804) |
0.164 (0.331) |
4e-05 (0.000381) |
0.9 (0.971) |
0.254 (0.444) |
0.575 (0.747) |
0.00411 (0.0198) |
0.0784 (0.206) |
15q gain | 24 (4%) | 553 |
0.0613 (0.175) |
0.111 (0.262) |
0.569 (0.744) |
0.133 (0.291) |
4e-05 (0.000381) |
0.282 (0.474) |
0.0683 (0.187) |
0.802 (0.909) |
0.0341 (0.111) |
0.385 (0.594) |
1p loss | 16 (3%) | 561 |
0.635 (0.793) |
0.828 (0.923) |
0.94 (1.00) |
0.194 (0.371) |
0.0211 (0.0788) |
0.587 (0.757) |
0.346 (0.551) |
0.266 (0.456) |
0.11 (0.262) |
0.0181 (0.0712) |
3p loss | 40 (7%) | 537 |
0.91 (0.98) |
0.79 (0.906) |
0.716 (0.847) |
0.148 (0.313) |
7e-05 (0.000611) |
0.202 (0.381) |
0.0423 (0.13) |
0.82 (0.921) |
0.638 (0.797) |
0.231 (0.415) |
6q loss | 125 (22%) | 452 |
0.94 (1.00) |
0.579 (0.749) |
0.565 (0.74) |
0.941 (1.00) |
1e-05 (0.000132) |
0.653 (0.804) |
0.0487 (0.147) |
0.334 (0.545) |
0.499 (0.696) |
0.295 (0.492) |
1p gain | 82 (14%) | 495 |
0.605 (0.77) |
0.129 (0.286) |
0.487 (0.684) |
0.25 (0.441) |
1e-05 (0.000132) |
0.829 (0.923) |
0.379 (0.586) |
0.52 (0.708) |
0.34 (0.548) |
0.271 (0.463) |
1q gain | 89 (15%) | 488 |
0.0765 (0.204) |
0.089 (0.225) |
0.13 (0.287) |
0.627 (0.785) |
1e-05 (0.000132) |
0.526 (0.713) |
0.0863 (0.22) |
0.53 (0.715) |
0.823 (0.921) |
0.508 (0.706) |
2p gain | 37 (6%) | 540 |
0.469 (0.666) |
0.735 (0.863) |
0.252 (0.443) |
0.226 (0.411) |
0.00269 (0.014) |
0.391 (0.596) |
0.795 (0.906) |
0.136 (0.296) |
1 (1.00) |
0.538 (0.722) |
2q gain | 36 (6%) | 541 |
0.648 (0.804) |
0.913 (0.982) |
0.0957 (0.236) |
0.278 (0.469) |
0.00177 (0.00948) |
0.391 (0.596) |
0.884 (0.963) |
0.369 (0.571) |
0.769 (0.891) |
0.177 (0.35) |
4p gain | 36 (6%) | 541 |
0.243 (0.432) |
0.613 (0.777) |
0.487 (0.684) |
0.518 (0.708) |
0.00081 (0.00496) |
0.46 (0.659) |
0.512 (0.707) |
0.536 (0.721) |
0.613 (0.777) |
0.791 (0.906) |
4q gain | 33 (6%) | 544 |
0.313 (0.517) |
0.317 (0.523) |
0.496 (0.694) |
0.54 (0.722) |
0.00542 (0.0247) |
0.266 (0.456) |
0.392 (0.597) |
0.701 (0.838) |
0.364 (0.569) |
0.66 (0.808) |
5p gain | 49 (8%) | 528 |
0.114 (0.266) |
0.154 (0.32) |
0.177 (0.35) |
0.346 (0.551) |
5e-05 (0.000461) |
0.231 (0.415) |
0.0553 (0.163) |
0.36 (0.569) |
0.126 (0.282) |
0.231 (0.415) |
5q gain | 41 (7%) | 536 |
0.141 (0.304) |
0.236 (0.422) |
0.116 (0.267) |
0.0531 (0.158) |
0.00012 (0.000974) |
0.117 (0.268) |
0.0832 (0.215) |
0.34 (0.548) |
0.17 (0.34) |
0.406 (0.611) |
6p gain | 24 (4%) | 553 |
0.0118 (0.0488) |
0.119 (0.271) |
0.877 (0.961) |
0.162 (0.33) |
0.157 (0.32) |
0.0838 (0.216) |
0.653 (0.804) |
0.889 (0.965) |
1 (1.00) |
1 (1.00) |
9q gain | 71 (12%) | 506 |
0.0795 (0.208) |
0.0708 (0.192) |
0.579 (0.749) |
0.164 (0.331) |
7e-05 (0.000611) |
0.197 (0.375) |
0.514 (0.708) |
0.368 (0.571) |
0.668 (0.809) |
0.0782 (0.206) |
11q gain | 14 (2%) | 563 |
0.188 (0.366) |
0.0631 (0.176) |
0.219 (0.402) |
0.361 (0.569) |
0.149 (0.313) |
0.00042 (0.00292) |
0.708 (0.839) |
0.883 (0.963) |
1 (1.00) |
1 (1.00) |
14q gain | 22 (4%) | 555 |
0.432 (0.634) |
0.78 (0.9) |
0.0101 (0.0433) |
0.805 (0.912) |
0.387 (0.595) |
0.51 (0.707) |
0.406 (0.611) |
0.111 (0.262) |
0.426 (0.63) |
0.325 (0.534) |
xq gain | 16 (3%) | 561 |
0.253 (0.444) |
0.948 (1.00) |
0.985 (1.00) |
0.362 (0.569) |
0.95 (1.00) |
0.717 (0.847) |
0.507 (0.706) |
1 (1.00) |
0.038 (0.12) |
0.26 (0.452) |
6p loss | 86 (15%) | 491 |
0.565 (0.74) |
0.334 (0.545) |
0.771 (0.892) |
0.706 (0.838) |
1e-05 (0.000132) |
0.571 (0.745) |
0.111 (0.262) |
0.0697 (0.189) |
0.869 (0.956) |
0.595 (0.763) |
8q loss | 42 (7%) | 535 |
0.618 (0.778) |
0.153 (0.319) |
0.0213 (0.0791) |
0.807 (0.913) |
0.105 (0.253) |
0.139 (0.301) |
0.459 (0.659) |
1 (1.00) |
0.461 (0.659) |
0.145 (0.309) |
12p loss | 58 (10%) | 519 |
0.0951 (0.236) |
0.0941 (0.234) |
0.56 (0.737) |
0.833 (0.923) |
0.00564 (0.0254) |
0.599 (0.765) |
0.123 (0.277) |
0.171 (0.342) |
1 (1.00) |
0.661 (0.808) |
12q loss | 57 (10%) | 520 |
0.142 (0.304) |
0.0998 (0.242) |
0.44 (0.639) |
0.653 (0.804) |
0.00026 (0.00189) |
0.551 (0.731) |
0.0807 (0.211) |
0.472 (0.669) |
1 (1.00) |
0.662 (0.808) |
16p loss | 63 (11%) | 514 |
0.285 (0.479) |
0.852 (0.943) |
0.663 (0.808) |
0.732 (0.862) |
0.0331 (0.109) |
0.0585 (0.17) |
0.717 (0.847) |
0.791 (0.906) |
0.564 (0.74) |
0.646 (0.804) |
16q loss | 83 (14%) | 494 |
0.0605 (0.175) |
0.429 (0.633) |
0.465 (0.662) |
0.896 (0.97) |
0.0139 (0.0561) |
0.368 (0.571) |
0.227 (0.411) |
0.199 (0.378) |
0.662 (0.808) |
0.6 (0.765) |
22q loss | 181 (31%) | 396 |
0.651 (0.804) |
0.56 (0.737) |
0.194 (0.371) |
0.876 (0.961) |
1e-05 (0.000132) |
0.0722 (0.194) |
0.426 (0.63) |
0.164 (0.331) |
0.201 (0.379) |
0.0927 (0.232) |
10q gain | 3 (1%) | 574 |
0.557 (0.737) |
1 (1.00) |
0.0512 (0.154) |
0.796 (0.906) |
0.195 (0.372) |
0.194 (0.371) |
||||
11p gain | 17 (3%) | 560 |
0.904 (0.974) |
0.88 (0.963) |
0.246 (0.435) |
0.944 (1.00) |
0.198 (0.375) |
0.0842 (0.216) |
0.403 (0.609) |
0.885 (0.963) |
0.695 (0.835) |
1 (1.00) |
13q gain | 10 (2%) | 567 |
0.0523 (0.156) |
0.496 (0.694) |
0.179 (0.353) |
0.826 (0.923) |
0.0568 (0.166) |
1 (1.00) |
0.149 (0.313) |
0.823 (0.921) |
0.428 (0.633) |
1 (1.00) |
xp gain | 15 (3%) | 562 |
0.282 (0.474) |
1 (1.00) |
0.795 (0.906) |
0.184 (0.361) |
0.897 (0.97) |
0.889 (0.965) |
1 (1.00) |
0.622 (0.78) |
0.0867 (0.22) |
0.435 (0.635) |
1q loss | 15 (3%) | 562 |
0.831 (0.923) |
0.978 (1.00) |
0.856 (0.944) |
0.364 (0.569) |
0.133 (0.291) |
1 (1.00) |
0.339 (0.548) |
0.288 (0.481) |
0.517 (0.708) |
0.0821 (0.213) |
7q loss | 6 (1%) | 571 |
0.101 (0.243) |
0.302 (0.504) |
0.942 (1.00) |
0.125 (0.28) |
0.0981 (0.24) |
|||||
8p loss | 58 (10%) | 519 |
0.546 (0.729) |
0.442 (0.642) |
0.179 (0.353) |
0.778 (0.899) |
0.258 (0.451) |
0.649 (0.804) |
0.736 (0.863) |
1 (1.00) |
0.574 (0.747) |
0.39 (0.596) |
9q loss | 94 (16%) | 483 |
0.368 (0.571) |
0.0966 (0.237) |
0.0732 (0.196) |
0.276 (0.468) |
0.548 (0.729) |
0.573 (0.747) |
0.246 (0.435) |
0.619 (0.778) |
0.754 (0.88) |
0.181 (0.356) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1P GAIN MUTATED | 50 | 15 | 17 |
1P GAIN WILD-TYPE | 112 | 203 | 180 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1Q GAIN MUTATED | 57 | 13 | 19 |
1Q GAIN WILD-TYPE | 105 | 205 | 178 |
P value = 0.00269 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2P GAIN MUTATED | 20 | 9 | 8 |
2P GAIN WILD-TYPE | 142 | 209 | 189 |
P value = 0.00177 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2Q GAIN MUTATED | 20 | 9 | 7 |
2Q GAIN WILD-TYPE | 142 | 209 | 190 |
P value = 0.00044 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
3P GAIN MUTATED | 16 | 18 | 5 | 15 |
3P GAIN WILD-TYPE | 131 | 78 | 147 | 98 |
P value = 0.0291 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
3P GAIN MUTATED | 13 | 18 | 5 | 18 |
3P GAIN WILD-TYPE | 135 | 84 | 95 | 140 |
P value = 0.0263 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
3P GAIN MUTATED | 35 | 5 | 15 |
3P GAIN WILD-TYPE | 258 | 119 | 114 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3P GAIN MUTATED | 37 | 5 | 16 |
3P GAIN WILD-TYPE | 125 | 213 | 181 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
3Q GAIN MUTATED | 17 | 21 | 7 | 15 |
3Q GAIN WILD-TYPE | 130 | 75 | 145 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3Q GAIN MUTATED | 38 | 7 | 19 |
3Q GAIN WILD-TYPE | 124 | 211 | 178 |
P value = 0.00081 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4P GAIN MUTATED | 19 | 5 | 12 |
4P GAIN WILD-TYPE | 143 | 213 | 185 |
P value = 0.00542 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4Q GAIN MUTATED | 16 | 5 | 12 |
4Q GAIN WILD-TYPE | 146 | 213 | 185 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5P GAIN MUTATED | 27 | 7 | 15 |
5P GAIN WILD-TYPE | 135 | 211 | 182 |
P value = 0.00012 (Fisher's exact test), Q value = 0.00097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5Q GAIN MUTATED | 23 | 6 | 12 |
5Q GAIN WILD-TYPE | 139 | 212 | 185 |
P value = 0.0118 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
6P GAIN MUTATED | 4 | 10 | 3 | 3 |
6P GAIN WILD-TYPE | 143 | 86 | 149 | 110 |
P value = 0.0017 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
6Q GAIN MUTATED | 4 | 11 | 2 | 3 |
6Q GAIN WILD-TYPE | 143 | 85 | 150 | 110 |
P value = 0.0356 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
6Q GAIN MUTATED | 5 | 7 | 0 | 8 |
6Q GAIN WILD-TYPE | 143 | 95 | 100 | 150 |
P value = 0.0247 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6Q GAIN MUTATED | 10 | 3 | 10 |
6Q GAIN WILD-TYPE | 152 | 215 | 187 |
P value = 0.0056 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
6Q GAIN MUTATED | 0 | 3 | 7 |
6Q GAIN WILD-TYPE | 89 | 105 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7P GAIN MUTATED | 135 | 65 | 128 | 82 |
7P GAIN WILD-TYPE | 12 | 31 | 24 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P GAIN MUTATED | 132 | 55 | 85 | 138 |
7P GAIN WILD-TYPE | 16 | 47 | 15 | 20 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
7P GAIN MUTATED | 139 | 136 | 64 | 105 |
7P GAIN WILD-TYPE | 17 | 47 | 23 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P GAIN MUTATED | 214 | 113 | 117 |
7P GAIN WILD-TYPE | 79 | 11 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7P GAIN MUTATED | 145 | 196 | 127 |
7P GAIN WILD-TYPE | 17 | 22 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
7P GAIN MUTATED | 82 | 93 | 46 |
7P GAIN WILD-TYPE | 7 | 15 | 32 |
P value = 0.0083 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
7P GAIN MUTATED | 42 | 47 | 29 | 26 | 37 |
7P GAIN WILD-TYPE | 2 | 10 | 15 | 4 | 8 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
7P GAIN MUTATED | 81 | 47 | 53 |
7P GAIN WILD-TYPE | 9 | 23 | 7 |
P value = 0.0155 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
7P GAIN MUTATED | 31 | 61 | 28 |
7P GAIN WILD-TYPE | 13 | 6 | 8 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7P GAIN MUTATED | 16 | 84 | 20 |
7P GAIN WILD-TYPE | 14 | 8 | 5 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7Q GAIN MUTATED | 135 | 62 | 129 | 87 |
7Q GAIN WILD-TYPE | 12 | 34 | 23 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7Q GAIN MUTATED | 130 | 61 | 84 | 138 |
7Q GAIN WILD-TYPE | 18 | 41 | 16 | 20 |
P value = 0.00109 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
7Q GAIN MUTATED | 140 | 136 | 68 | 103 |
7Q GAIN WILD-TYPE | 16 | 47 | 19 | 17 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7Q GAIN MUTATED | 221 | 112 | 114 |
7Q GAIN WILD-TYPE | 72 | 12 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7Q GAIN MUTATED | 141 | 199 | 134 |
7Q GAIN WILD-TYPE | 21 | 19 | 63 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
7Q GAIN MUTATED | 81 | 91 | 50 |
7Q GAIN WILD-TYPE | 8 | 17 | 28 |
P value = 0.011 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
7Q GAIN MUTATED | 80 | 51 | 54 |
7Q GAIN WILD-TYPE | 10 | 19 | 6 |
P value = 0.00162 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7Q GAIN MUTATED | 19 | 84 | 21 |
7Q GAIN WILD-TYPE | 11 | 8 | 4 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8P GAIN MUTATED | 7 | 18 | 6 | 17 |
8P GAIN WILD-TYPE | 140 | 78 | 146 | 96 |
P value = 0.00072 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8P GAIN MUTATED | 10 | 21 | 4 | 13 |
8P GAIN WILD-TYPE | 138 | 81 | 96 | 145 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
8P GAIN MUTATED | 35 | 4 | 13 |
8P GAIN WILD-TYPE | 127 | 214 | 184 |
P value = 0.00416 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
8P GAIN MUTATED | 4 | 10 | 16 |
8P GAIN WILD-TYPE | 85 | 98 | 62 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8Q GAIN MUTATED | 7 | 20 | 7 | 20 |
8Q GAIN WILD-TYPE | 140 | 76 | 145 | 93 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8Q GAIN MUTATED | 9 | 26 | 4 | 15 |
8Q GAIN WILD-TYPE | 139 | 76 | 96 | 143 |
P value = 0.0401 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
8Q GAIN MUTATED | 10 | 27 | 10 | 8 |
8Q GAIN WILD-TYPE | 146 | 156 | 77 | 112 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
8Q GAIN MUTATED | 34 | 6 | 19 |
8Q GAIN WILD-TYPE | 128 | 212 | 178 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
8Q GAIN MUTATED | 4 | 11 | 19 |
8Q GAIN WILD-TYPE | 85 | 97 | 59 |
P value = 0.00317 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
9P GAIN MUTATED | 14 | 17 | 7 | 6 |
9P GAIN WILD-TYPE | 133 | 79 | 145 | 107 |
P value = 0.0297 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
9P GAIN MUTATED | 15 | 12 | 2 | 15 |
9P GAIN WILD-TYPE | 133 | 90 | 98 | 143 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
9P GAIN MUTATED | 27 | 7 | 13 |
9P GAIN WILD-TYPE | 135 | 211 | 184 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
9Q GAIN MUTATED | 36 | 14 | 21 |
9Q GAIN WILD-TYPE | 126 | 204 | 176 |
P value = 0.00111 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10P GAIN MUTATED | 1 | 6 | 0 | 5 |
10P GAIN WILD-TYPE | 146 | 90 | 152 | 108 |
P value = 0.00013 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P GAIN MUTATED | 2 | 9 | 0 | 1 |
10P GAIN WILD-TYPE | 146 | 93 | 100 | 157 |
P value = 0.00098 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10P GAIN MUTATED | 3 | 0 | 10 |
10P GAIN WILD-TYPE | 159 | 218 | 187 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10P GAIN MUTATED | 1 | 0 | 7 |
10P GAIN WILD-TYPE | 88 | 108 | 71 |
P value = 0.00444 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
10P GAIN MUTATED | 0 | 5 | 0 |
10P GAIN WILD-TYPE | 90 | 65 | 60 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
11Q GAIN MUTATED | 2 | 0 | 8 |
11Q GAIN WILD-TYPE | 87 | 108 | 70 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12P GAIN MUTATED | 31 | 11 | 18 |
12P GAIN WILD-TYPE | 131 | 207 | 179 |
P value = 0.00411 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
12P GAIN MUTATED | 0 | 12 | 3 |
12P GAIN WILD-TYPE | 44 | 55 | 33 |
P value = 0.0104 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
12Q GAIN MUTATED | 16 | 15 | 17 |
12Q GAIN WILD-TYPE | 277 | 109 | 112 |
P value = 0.0014 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12Q GAIN MUTATED | 25 | 11 | 13 |
12Q GAIN WILD-TYPE | 137 | 207 | 184 |
P value = 0.0224 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
12Q GAIN MUTATED | 0 | 9 | 3 |
12Q GAIN WILD-TYPE | 44 | 58 | 33 |
P value = 0.0101 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
14Q GAIN MUTATED | 10 | 4 | 7 | 1 |
14Q GAIN WILD-TYPE | 146 | 179 | 80 | 119 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
15Q GAIN MUTATED | 15 | 1 | 8 |
15Q GAIN WILD-TYPE | 147 | 217 | 189 |
P value = 0.0341 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
15Q GAIN MUTATED | 0 | 7 | 1 |
15Q GAIN WILD-TYPE | 44 | 60 | 35 |
P value = 0.00785 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
16P GAIN MUTATED | 12 | 11 | 3 | 11 |
16P GAIN WILD-TYPE | 135 | 85 | 149 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16P GAIN MUTATED | 25 | 4 | 9 |
16P GAIN WILD-TYPE | 137 | 214 | 188 |
P value = 0.0317 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
16P GAIN MUTATED | 6 | 5 | 12 |
16P GAIN WILD-TYPE | 83 | 103 | 66 |
P value = 0.0183 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
16Q GAIN MUTATED | 10 | 12 | 4 | 10 |
16Q GAIN WILD-TYPE | 137 | 84 | 148 | 103 |
P value = 0.0053 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
16Q GAIN MUTATED | 10 | 15 | 2 | 9 |
16Q GAIN WILD-TYPE | 138 | 87 | 98 | 149 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16Q GAIN MUTATED | 22 | 5 | 10 |
16Q GAIN WILD-TYPE | 140 | 213 | 187 |
P value = 0.0263 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
16Q GAIN MUTATED | 5 | 5 | 12 |
16Q GAIN WILD-TYPE | 84 | 103 | 66 |
P value = 0.023 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
16Q GAIN MUTATED | 1 | 8 | 4 | 1 | 0 |
16Q GAIN WILD-TYPE | 43 | 49 | 40 | 29 | 45 |
P value = 0.00047 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17P GAIN MUTATED | 9 | 14 | 4 | 16 |
17P GAIN WILD-TYPE | 138 | 82 | 148 | 97 |
P value = 0.0204 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17P GAIN MUTATED | 9 | 16 | 4 | 14 |
17P GAIN WILD-TYPE | 139 | 86 | 96 | 144 |
P value = 0.0393 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
17P GAIN MUTATED | 32 | 8 | 5 |
17P GAIN WILD-TYPE | 261 | 116 | 124 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17P GAIN MUTATED | 27 | 9 | 12 |
17P GAIN WILD-TYPE | 135 | 209 | 185 |
P value = 0.034 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
17P GAIN MUTATED | 5 | 7 | 13 |
17P GAIN WILD-TYPE | 84 | 101 | 65 |
P value = 0.0255 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
17P GAIN MUTATED | 4 | 4 | 1 | 5 | 0 |
17P GAIN WILD-TYPE | 40 | 53 | 43 | 25 | 45 |
P value = 0.00112 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17Q GAIN MUTATED | 13 | 17 | 6 | 17 |
17Q GAIN WILD-TYPE | 134 | 79 | 146 | 96 |
P value = 0.0466 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17Q GAIN MUTATED | 11 | 17 | 6 | 19 |
17Q GAIN WILD-TYPE | 137 | 85 | 94 | 139 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17Q GAIN MUTATED | 34 | 12 | 14 |
17Q GAIN WILD-TYPE | 128 | 206 | 183 |
P value = 0.0373 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
17Q GAIN MUTATED | 6 | 10 | 15 |
17Q GAIN WILD-TYPE | 83 | 98 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18P GAIN MUTATED | 10 | 25 | 5 | 15 |
18P GAIN WILD-TYPE | 137 | 71 | 147 | 98 |
P value = 0.00063 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18P GAIN MUTATED | 11 | 22 | 4 | 18 |
18P GAIN WILD-TYPE | 137 | 80 | 96 | 140 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18P GAIN MUTATED | 34 | 3 | 21 |
18P GAIN WILD-TYPE | 128 | 215 | 176 |
P value = 0.00506 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
18P GAIN MUTATED | 6 | 10 | 18 |
18P GAIN WILD-TYPE | 83 | 98 | 60 |
P value = 0.0192 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
18P GAIN MUTATED | 6 | 11 | 0 |
18P GAIN WILD-TYPE | 38 | 56 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18Q GAIN MUTATED | 9 | 24 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 72 | 146 | 97 |
P value = 0.00062 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18Q GAIN MUTATED | 10 | 23 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 79 | 94 | 142 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18Q GAIN MUTATED | 37 | 4 | 17 |
18Q GAIN WILD-TYPE | 125 | 214 | 180 |
P value = 0.00571 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
18Q GAIN MUTATED | 7 | 9 | 18 |
18Q GAIN WILD-TYPE | 82 | 99 | 60 |
P value = 0.0189 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
18Q GAIN MUTATED | 6 | 11 | 0 |
18Q GAIN WILD-TYPE | 38 | 56 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19P GAIN MUTATED | 52 | 34 | 91 | 21 |
19P GAIN WILD-TYPE | 95 | 62 | 61 | 92 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P GAIN MUTATED | 62 | 25 | 58 | 53 |
19P GAIN WILD-TYPE | 86 | 77 | 42 | 105 |
P value = 0.00028 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19P GAIN MUTATED | 94 | 50 | 68 |
19P GAIN WILD-TYPE | 199 | 74 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19P GAIN MUTATED | 45 | 137 | 44 |
19P GAIN WILD-TYPE | 117 | 81 | 153 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19P GAIN MUTATED | 28 | 68 | 12 |
19P GAIN WILD-TYPE | 61 | 40 | 66 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
19P GAIN MUTATED | 31 | 16 | 37 |
19P GAIN WILD-TYPE | 59 | 54 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19Q GAIN MUTATED | 46 | 28 | 85 | 15 |
19Q GAIN WILD-TYPE | 101 | 68 | 67 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q GAIN MUTATED | 55 | 18 | 55 | 46 |
19Q GAIN WILD-TYPE | 93 | 84 | 45 | 112 |
P value = 0.00324 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19Q GAIN MUTATED | 82 | 47 | 57 |
19Q GAIN WILD-TYPE | 211 | 77 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19Q GAIN MUTATED | 39 | 127 | 33 |
19Q GAIN WILD-TYPE | 123 | 91 | 164 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19Q GAIN MUTATED | 25 | 62 | 6 |
19Q GAIN WILD-TYPE | 64 | 46 | 72 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
19Q GAIN MUTATED | 25 | 13 | 31 |
19Q GAIN WILD-TYPE | 65 | 57 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P GAIN MUTATED | 51 | 26 | 86 | 29 |
20P GAIN WILD-TYPE | 96 | 70 | 66 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P GAIN MUTATED | 55 | 21 | 64 | 52 |
20P GAIN WILD-TYPE | 93 | 81 | 36 | 106 |
P value = 0.00447 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
20P GAIN MUTATED | 61 | 75 | 20 | 56 |
20P GAIN WILD-TYPE | 95 | 108 | 67 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20P GAIN MUTATED | 85 | 58 | 69 |
20P GAIN WILD-TYPE | 208 | 66 | 60 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20P GAIN MUTATED | 61 | 108 | 53 |
20P GAIN WILD-TYPE | 101 | 110 | 144 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
20P GAIN MUTATED | 35 | 57 | 17 |
20P GAIN WILD-TYPE | 54 | 51 | 61 |
P value = 0.00047 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
20P GAIN MUTATED | 27 | 17 | 33 |
20P GAIN WILD-TYPE | 63 | 53 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20Q GAIN MUTATED | 50 | 28 | 86 | 27 |
20Q GAIN WILD-TYPE | 97 | 68 | 66 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q GAIN MUTATED | 58 | 22 | 62 | 49 |
20Q GAIN WILD-TYPE | 90 | 80 | 38 | 109 |
P value = 0.00283 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
20Q GAIN MUTATED | 62 | 74 | 19 | 55 |
20Q GAIN WILD-TYPE | 94 | 109 | 68 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20Q GAIN MUTATED | 85 | 57 | 68 |
20Q GAIN WILD-TYPE | 208 | 67 | 61 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20Q GAIN MUTATED | 59 | 107 | 54 |
20Q GAIN WILD-TYPE | 103 | 111 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
20Q GAIN MUTATED | 34 | 57 | 16 |
20Q GAIN WILD-TYPE | 55 | 51 | 62 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
20Q GAIN MUTATED | 28 | 17 | 34 |
20Q GAIN WILD-TYPE | 62 | 53 | 26 |
P value = 0.00116 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
21Q GAIN MUTATED | 28 | 11 | 9 | 7 |
21Q GAIN WILD-TYPE | 119 | 85 | 143 | 106 |
P value = 0.00759 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
21Q GAIN MUTATED | 25 | 6 | 5 | 19 |
21Q GAIN WILD-TYPE | 123 | 96 | 95 | 139 |
P value = 0.0107 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
21Q GAIN MUTATED | 24 | 15 | 4 | 19 |
21Q GAIN WILD-TYPE | 132 | 168 | 83 | 101 |
P value = 0.00412 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
21Q GAIN MUTATED | 26 | 25 | 11 |
21Q GAIN WILD-TYPE | 267 | 99 | 118 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
21Q GAIN MUTATED | 30 | 11 | 23 |
21Q GAIN WILD-TYPE | 132 | 207 | 174 |
P value = 0.00174 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
21Q GAIN MUTATED | 20 | 7 | 6 |
21Q GAIN WILD-TYPE | 69 | 101 | 72 |
P value = 0.0179 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
21Q GAIN MUTATED | 2 | 16 | 5 |
21Q GAIN WILD-TYPE | 42 | 51 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
22Q GAIN MUTATED | 6 | 14 | 0 | 11 |
22Q GAIN WILD-TYPE | 141 | 82 | 152 | 102 |
P value = 0.00319 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
22Q GAIN MUTATED | 11 | 11 | 0 | 9 |
22Q GAIN WILD-TYPE | 137 | 91 | 100 | 149 |
P value = 0.00011 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
22Q GAIN MUTATED | 19 | 3 | 12 |
22Q GAIN WILD-TYPE | 143 | 215 | 185 |
P value = 0.0287 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
22Q GAIN MUTATED | 5 | 7 | 0 |
22Q GAIN WILD-TYPE | 85 | 63 | 60 |
P value = 0.038 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
XQ GAIN MUTATED | 0 | 6 | 0 |
XQ GAIN WILD-TYPE | 44 | 61 | 36 |
P value = 0.0211 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1P LOSS MUTATED | 2 | 3 | 11 |
1P LOSS WILD-TYPE | 160 | 215 | 186 |
P value = 0.0181 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
1P LOSS MUTATED | 2 | 0 | 2 |
1P LOSS WILD-TYPE | 28 | 92 | 23 |
P value = 0.0309 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
2P LOSS MUTATED | 7 | 12 | 5 | 5 |
2P LOSS WILD-TYPE | 140 | 84 | 147 | 108 |
P value = 0.0271 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
2P LOSS MUTATED | 8 | 12 | 2 | 7 |
2P LOSS WILD-TYPE | 140 | 90 | 98 | 151 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2P LOSS MUTATED | 21 | 2 | 9 |
2P LOSS WILD-TYPE | 141 | 216 | 188 |
P value = 0.0296 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
2Q LOSS MUTATED | 7 | 12 | 5 | 5 |
2Q LOSS WILD-TYPE | 140 | 84 | 147 | 108 |
P value = 0.0288 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
2Q LOSS MUTATED | 8 | 12 | 2 | 7 |
2Q LOSS WILD-TYPE | 140 | 90 | 98 | 151 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2Q LOSS MUTATED | 21 | 2 | 9 |
2Q LOSS WILD-TYPE | 141 | 216 | 188 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3P LOSS MUTATED | 21 | 4 | 15 |
3P LOSS WILD-TYPE | 141 | 214 | 182 |
P value = 0.0423 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
3P LOSS MUTATED | 2 | 4 | 1 | 2 | 9 |
3P LOSS WILD-TYPE | 42 | 53 | 43 | 28 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3Q LOSS MUTATED | 20 | 2 | 12 |
3Q LOSS WILD-TYPE | 142 | 216 | 185 |
P value = 0.0348 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
3Q LOSS MUTATED | 7 | 2 | 8 |
3Q LOSS WILD-TYPE | 82 | 106 | 70 |
P value = 0.0337 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
3Q LOSS MUTATED | 1 | 4 | 1 | 1 | 8 |
3Q LOSS WILD-TYPE | 43 | 53 | 43 | 29 | 37 |
P value = 0.00317 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
4P LOSS MUTATED | 10 | 19 | 4 | 17 |
4P LOSS WILD-TYPE | 138 | 83 | 96 | 141 |
P value = 0.0331 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
4P LOSS MUTATED | 7 | 25 | 8 | 12 |
4P LOSS WILD-TYPE | 149 | 158 | 79 | 108 |
P value = 0.00217 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4P LOSS MUTATED | 27 | 15 | 13 |
4P LOSS WILD-TYPE | 135 | 203 | 184 |
P value = 0.00183 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
4P LOSS MUTATED | 2 | 12 | 14 |
4P LOSS WILD-TYPE | 87 | 96 | 64 |
P value = 8e-04 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
4Q LOSS MUTATED | 10 | 19 | 7 | 13 |
4Q LOSS WILD-TYPE | 137 | 77 | 145 | 100 |
P value = 0.00061 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
4Q LOSS MUTATED | 10 | 20 | 3 | 16 |
4Q LOSS WILD-TYPE | 138 | 82 | 97 | 142 |
P value = 0.0188 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
4Q LOSS MUTATED | 6 | 24 | 9 | 13 |
4Q LOSS WILD-TYPE | 150 | 159 | 78 | 107 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4Q LOSS MUTATED | 29 | 11 | 16 |
4Q LOSS WILD-TYPE | 133 | 207 | 181 |
P value = 0.00097 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
4Q LOSS MUTATED | 2 | 12 | 15 |
4Q LOSS WILD-TYPE | 87 | 96 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5P LOSS MUTATED | 5 | 20 | 6 | 9 |
5P LOSS WILD-TYPE | 142 | 76 | 146 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5P LOSS MUTATED | 6 | 22 | 5 | 7 |
5P LOSS WILD-TYPE | 142 | 80 | 95 | 151 |
P value = 0.00178 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
5P LOSS MUTATED | 4 | 24 | 6 | 6 |
5P LOSS WILD-TYPE | 152 | 159 | 81 | 114 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5P LOSS MUTATED | 21 | 4 | 18 |
5P LOSS WILD-TYPE | 141 | 214 | 179 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
5P LOSS MUTATED | 1 | 5 | 15 |
5P LOSS WILD-TYPE | 88 | 103 | 63 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5Q LOSS MUTATED | 6 | 19 | 5 | 11 |
5Q LOSS WILD-TYPE | 141 | 77 | 147 | 102 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5Q LOSS MUTATED | 9 | 21 | 4 | 7 |
5Q LOSS WILD-TYPE | 139 | 81 | 96 | 151 |
P value = 0.00092 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
5Q LOSS MUTATED | 4 | 25 | 6 | 6 |
5Q LOSS WILD-TYPE | 152 | 158 | 81 | 114 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5Q LOSS MUTATED | 21 | 5 | 18 |
5Q LOSS WILD-TYPE | 141 | 213 | 179 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
5Q LOSS MUTATED | 0 | 5 | 17 |
5Q LOSS WILD-TYPE | 89 | 103 | 61 |
P value = 0.0421 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
5Q LOSS MUTATED | 6 | 10 | 0 |
5Q LOSS WILD-TYPE | 24 | 82 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6P LOSS MUTATED | 51 | 13 | 22 |
6P LOSS WILD-TYPE | 111 | 205 | 175 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6Q LOSS MUTATED | 62 | 30 | 33 |
6Q LOSS WILD-TYPE | 100 | 188 | 164 |
P value = 0.0487 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
6Q LOSS MUTATED | 11 | 10 | 3 | 9 | 12 |
6Q LOSS WILD-TYPE | 33 | 47 | 41 | 21 | 33 |
P value = 0.0222 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7P LOSS MUTATED | 0 | 4 | 1 | 3 |
7P LOSS WILD-TYPE | 147 | 92 | 151 | 110 |
P value = 0.0339 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P LOSS MUTATED | 1 | 5 | 0 | 2 |
7P LOSS WILD-TYPE | 147 | 97 | 100 | 156 |
P value = 0.0409 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P LOSS MUTATED | 8 | 0 | 0 |
7P LOSS WILD-TYPE | 285 | 124 | 129 |
P value = 0.0157 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7P LOSS MUTATED | 2 | 0 | 6 |
7P LOSS WILD-TYPE | 160 | 218 | 191 |
P value = 0.0213 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
8Q LOSS MUTATED | 21 | 9 | 6 | 6 |
8Q LOSS WILD-TYPE | 135 | 174 | 81 | 114 |
P value = 0.00789 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
9P LOSS MUTATED | 50 | 20 | 62 | 44 |
9P LOSS WILD-TYPE | 97 | 76 | 90 | 69 |
P value = 0.0221 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
9P LOSS MUTATED | 8 | 23 | 17 |
9P LOSS WILD-TYPE | 36 | 44 | 19 |
P value = 0.00893 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
9P LOSS MUTATED | 4 | 31 | 13 |
9P LOSS WILD-TYPE | 26 | 61 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10P LOSS MUTATED | 132 | 64 | 140 | 84 |
10P LOSS WILD-TYPE | 15 | 32 | 12 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P LOSS MUTATED | 127 | 63 | 93 | 137 |
10P LOSS WILD-TYPE | 21 | 39 | 7 | 21 |
P value = 0.00999 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
10P LOSS MUTATED | 141 | 145 | 67 | 103 |
10P LOSS WILD-TYPE | 15 | 38 | 20 | 17 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10P LOSS MUTATED | 227 | 109 | 120 |
10P LOSS WILD-TYPE | 66 | 15 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10P LOSS MUTATED | 150 | 212 | 121 |
10P LOSS WILD-TYPE | 12 | 6 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10P LOSS MUTATED | 79 | 99 | 46 |
10P LOSS WILD-TYPE | 10 | 9 | 32 |
P value = 0.00054 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
10P LOSS MUTATED | 83 | 53 | 58 |
10P LOSS WILD-TYPE | 7 | 17 | 2 |
P value = 0.0127 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
10P LOSS MUTATED | 22 | 85 | 24 |
10P LOSS WILD-TYPE | 8 | 7 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10Q LOSS MUTATED | 132 | 68 | 146 | 87 |
10Q LOSS WILD-TYPE | 15 | 28 | 6 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10Q LOSS MUTATED | 128 | 69 | 97 | 139 |
10Q LOSS WILD-TYPE | 20 | 33 | 3 | 19 |
P value = 0.00575 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
10Q LOSS MUTATED | 144 | 152 | 67 | 105 |
10Q LOSS WILD-TYPE | 12 | 31 | 20 | 15 |
P value = 0.00011 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10Q LOSS MUTATED | 236 | 109 | 123 |
10Q LOSS WILD-TYPE | 57 | 15 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10Q LOSS MUTATED | 150 | 214 | 130 |
10Q LOSS WILD-TYPE | 12 | 4 | 67 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10Q LOSS MUTATED | 78 | 102 | 56 |
10Q LOSS WILD-TYPE | 11 | 6 | 22 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
10Q LOSS MUTATED | 83 | 52 | 59 |
10Q LOSS WILD-TYPE | 7 | 18 | 1 |
P value = 0.0218 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
10Q LOSS MUTATED | 23 | 86 | 24 |
10Q LOSS WILD-TYPE | 7 | 6 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11P LOSS MUTATED | 27 | 32 | 9 | 22 |
11P LOSS WILD-TYPE | 120 | 64 | 143 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11P LOSS MUTATED | 26 | 36 | 4 | 24 |
11P LOSS WILD-TYPE | 122 | 66 | 96 | 134 |
P value = 0.0142 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
11P LOSS MUTATED | 63 | 20 | 13 |
11P LOSS WILD-TYPE | 230 | 104 | 116 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
11P LOSS MUTATED | 59 | 8 | 32 |
11P LOSS WILD-TYPE | 103 | 210 | 165 |
P value = 0.00279 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
11P LOSS MUTATED | 14 | 16 | 27 |
11P LOSS WILD-TYPE | 75 | 92 | 51 |
P value = 0.0299 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
11P LOSS MUTATED | 11 | 17 | 5 |
11P LOSS WILD-TYPE | 79 | 53 | 55 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11Q LOSS MUTATED | 31 | 28 | 10 | 18 |
11Q LOSS WILD-TYPE | 116 | 68 | 142 | 95 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11Q LOSS MUTATED | 28 | 28 | 5 | 26 |
11Q LOSS WILD-TYPE | 120 | 74 | 95 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
11Q LOSS MUTATED | 58 | 10 | 25 |
11Q LOSS WILD-TYPE | 104 | 208 | 172 |
P value = 0.00564 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12P LOSS MUTATED | 26 | 13 | 19 |
12P LOSS WILD-TYPE | 136 | 205 | 178 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12Q LOSS MUTATED | 28 | 10 | 19 |
12Q LOSS WILD-TYPE | 134 | 208 | 178 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
13Q LOSS MUTATED | 57 | 35 | 26 | 45 |
13Q LOSS WILD-TYPE | 90 | 61 | 126 | 68 |
P value = 0.00177 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
13Q LOSS MUTATED | 50 | 41 | 17 | 55 |
13Q LOSS WILD-TYPE | 98 | 61 | 83 | 103 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
13Q LOSS MUTATED | 112 | 20 | 54 |
13Q LOSS WILD-TYPE | 50 | 198 | 143 |
P value = 0.0115 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
13Q LOSS MUTATED | 30 | 27 | 36 |
13Q LOSS WILD-TYPE | 59 | 81 | 42 |
P value = 0.0271 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
13Q LOSS MUTATED | 27 | 28 | 11 |
13Q LOSS WILD-TYPE | 63 | 42 | 49 |
P value = 0.0492 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
13Q LOSS MUTATED | 20 | 18 | 8 |
13Q LOSS WILD-TYPE | 24 | 49 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
14Q LOSS MUTATED | 46 | 33 | 17 | 39 |
14Q LOSS WILD-TYPE | 101 | 63 | 135 | 74 |
P value = 0.00011 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
14Q LOSS MUTATED | 43 | 35 | 10 | 47 |
14Q LOSS WILD-TYPE | 105 | 67 | 90 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
14Q LOSS MUTATED | 82 | 12 | 52 |
14Q LOSS WILD-TYPE | 80 | 206 | 145 |
P value = 0.0241 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
14Q LOSS MUTATED | 25 | 19 | 27 |
14Q LOSS WILD-TYPE | 64 | 89 | 51 |
P value = 0.0293 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
14Q LOSS MUTATED | 28 | 21 | 8 |
14Q LOSS WILD-TYPE | 62 | 49 | 52 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
15Q LOSS MUTATED | 26 | 26 | 12 | 31 |
15Q LOSS WILD-TYPE | 121 | 70 | 140 | 82 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
15Q LOSS MUTATED | 22 | 37 | 7 | 29 |
15Q LOSS WILD-TYPE | 126 | 65 | 93 | 129 |
P value = 0.00401 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
15Q LOSS MUTATED | 21 | 48 | 15 | 14 |
15Q LOSS WILD-TYPE | 135 | 135 | 72 | 106 |
P value = 0.00358 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
15Q LOSS MUTATED | 65 | 11 | 22 |
15Q LOSS WILD-TYPE | 228 | 113 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
15Q LOSS MUTATED | 58 | 20 | 28 |
15Q LOSS WILD-TYPE | 104 | 198 | 169 |
P value = 0.0193 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
15Q LOSS MUTATED | 16 | 19 | 5 |
15Q LOSS WILD-TYPE | 74 | 51 | 55 |
P value = 0.0034 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
15Q LOSS MUTATED | 16 | 8 | 4 |
15Q LOSS WILD-TYPE | 28 | 59 | 32 |
P value = 0.0226 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
15Q LOSS MUTATED | 11 | 15 | 2 |
15Q LOSS WILD-TYPE | 19 | 77 | 23 |
P value = 0.0331 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16P LOSS MUTATED | 24 | 15 | 24 |
16P LOSS WILD-TYPE | 138 | 203 | 173 |
P value = 0.0139 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16Q LOSS MUTATED | 31 | 20 | 32 |
16Q LOSS WILD-TYPE | 131 | 198 | 165 |
P value = 0.0201 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17P LOSS MUTATED | 25 | 13 | 10 | 9 |
17P LOSS WILD-TYPE | 122 | 83 | 142 | 104 |
P value = 0.0202 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17P LOSS MUTATED | 23 | 16 | 8 | 10 |
17P LOSS WILD-TYPE | 125 | 86 | 92 | 148 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17P LOSS MUTATED | 37 | 5 | 23 |
17P LOSS WILD-TYPE | 125 | 213 | 174 |
P value = 0.00491 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17Q LOSS MUTATED | 19 | 7 | 9 | 2 |
17Q LOSS WILD-TYPE | 128 | 89 | 143 | 111 |
P value = 0.0465 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
17Q LOSS MUTATED | 15 | 15 | 10 |
17Q LOSS WILD-TYPE | 278 | 109 | 119 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17Q LOSS MUTATED | 24 | 4 | 13 |
17Q LOSS WILD-TYPE | 138 | 214 | 184 |
P value = 0.0367 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
17Q LOSS MUTATED | 10 | 3 | 3 |
17Q LOSS WILD-TYPE | 79 | 105 | 75 |
P value = 0.0472 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18P LOSS MUTATED | 20 | 15 | 9 | 15 |
18P LOSS WILD-TYPE | 127 | 81 | 143 | 98 |
P value = 0.0321 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18P LOSS MUTATED | 19 | 16 | 4 | 20 |
18P LOSS WILD-TYPE | 129 | 86 | 96 | 138 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18P LOSS MUTATED | 34 | 12 | 25 |
18P LOSS WILD-TYPE | 128 | 206 | 172 |
P value = 0.0407 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
18P LOSS MUTATED | 15 | 13 | 3 |
18P LOSS WILD-TYPE | 75 | 57 | 57 |
P value = 0.00738 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18Q LOSS MUTATED | 18 | 13 | 2 | 20 |
18Q LOSS WILD-TYPE | 130 | 89 | 98 | 138 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18Q LOSS MUTATED | 29 | 10 | 23 |
18Q LOSS WILD-TYPE | 133 | 208 | 174 |
P value = 0.00282 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
18Q LOSS MUTATED | 11 | 14 | 1 |
18Q LOSS WILD-TYPE | 79 | 56 | 59 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19P LOSS MUTATED | 3 | 10 | 2 | 10 |
19P LOSS WILD-TYPE | 144 | 86 | 150 | 103 |
P value = 0.00132 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P LOSS MUTATED | 4 | 13 | 1 | 7 |
19P LOSS WILD-TYPE | 144 | 89 | 99 | 151 |
P value = 0.0136 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19P LOSS MUTATED | 13 | 4 | 10 |
19P LOSS WILD-TYPE | 149 | 214 | 187 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19P LOSS MUTATED | 3 | 0 | 10 |
19P LOSS WILD-TYPE | 86 | 108 | 68 |
P value = 0.036 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
19P LOSS MUTATED | 1 | 7 | 3 |
19P LOSS WILD-TYPE | 89 | 63 | 57 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19Q LOSS MUTATED | 6 | 10 | 2 | 13 |
19Q LOSS WILD-TYPE | 141 | 86 | 150 | 100 |
P value = 0.00472 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q LOSS MUTATED | 7 | 13 | 1 | 10 |
19Q LOSS WILD-TYPE | 141 | 89 | 99 | 148 |
P value = 0.00112 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19Q LOSS MUTATED | 16 | 4 | 15 |
19Q LOSS WILD-TYPE | 146 | 214 | 182 |
P value = 0.00083 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19Q LOSS MUTATED | 6 | 1 | 11 |
19Q LOSS WILD-TYPE | 83 | 107 | 67 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P LOSS MUTATED | 4 | 10 | 0 | 3 |
20P LOSS WILD-TYPE | 143 | 86 | 152 | 110 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P LOSS MUTATED | 5 | 11 | 0 | 1 |
20P LOSS WILD-TYPE | 143 | 91 | 100 | 157 |
P value = 0.036 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
20P LOSS MUTATED | 2 | 7 | 7 | 2 |
20P LOSS WILD-TYPE | 154 | 176 | 80 | 118 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20P LOSS MUTATED | 14 | 0 | 5 |
20P LOSS WILD-TYPE | 148 | 218 | 192 |
P value = 0.0105 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
20P LOSS MUTATED | 4 | 0 | 0 |
20P LOSS WILD-TYPE | 40 | 67 | 36 |
P value = 0.00215 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
20P LOSS MUTATED | 4 | 0 | 0 |
20P LOSS WILD-TYPE | 26 | 92 | 25 |
P value = 0.00142 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20Q LOSS MUTATED | 4 | 8 | 0 | 3 |
20Q LOSS WILD-TYPE | 143 | 88 | 152 | 110 |
P value = 0.00011 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q LOSS MUTATED | 4 | 10 | 0 | 1 |
20Q LOSS WILD-TYPE | 144 | 92 | 100 | 157 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20Q LOSS MUTATED | 14 | 1 | 2 |
20Q LOSS WILD-TYPE | 148 | 217 | 195 |
P value = 0.0402 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
20Q LOSS MUTATED | 3 | 0 | 0 |
20Q LOSS WILD-TYPE | 41 | 67 | 36 |
P value = 0.012 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
20Q LOSS MUTATED | 3 | 0 | 0 |
20Q LOSS WILD-TYPE | 27 | 92 | 25 |
P value = 0.0206 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
21Q LOSS MUTATED | 4 | 12 | 10 | 10 |
21Q LOSS WILD-TYPE | 143 | 84 | 142 | 103 |
P value = 0.00124 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
21Q LOSS MUTATED | 5 | 17 | 6 | 8 |
21Q LOSS WILD-TYPE | 143 | 85 | 94 | 150 |
P value = 0.00058 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
21Q LOSS MUTATED | 22 | 7 | 13 |
21Q LOSS WILD-TYPE | 140 | 211 | 184 |
P value = 0.00158 (Fisher's exact test), Q value = 0.0088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
21Q LOSS MUTATED | 1 | 7 | 12 |
21Q LOSS WILD-TYPE | 88 | 101 | 66 |
P value = 0.0262 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
21Q LOSS MUTATED | 1 | 7 | 4 |
21Q LOSS WILD-TYPE | 89 | 63 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
22Q LOSS MUTATED | 79 | 47 | 55 |
22Q LOSS WILD-TYPE | 83 | 171 | 142 |
P value = 0.00306 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
XP LOSS MUTATED | 20 | 32 | 28 | 22 |
XP LOSS WILD-TYPE | 127 | 64 | 124 | 91 |
P value = 0.0122 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
XP LOSS MUTATED | 21 | 32 | 19 | 30 |
XP LOSS WILD-TYPE | 127 | 70 | 81 | 128 |
P value = 0.0423 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
XP LOSS MUTATED | 24 | 48 | 17 | 18 |
XP LOSS WILD-TYPE | 132 | 135 | 70 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
XP LOSS MUTATED | 59 | 27 | 28 |
XP LOSS WILD-TYPE | 103 | 191 | 169 |
P value = 0.00011 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
XP LOSS MUTATED | 9 | 19 | 28 |
XP LOSS WILD-TYPE | 80 | 89 | 50 |
P value = 0.0299 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
XP LOSS MUTATED | 7 | 12 | 6 | 13 | 13 |
XP LOSS WILD-TYPE | 37 | 45 | 38 | 17 | 32 |
P value = 0.0192 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
XQ LOSS MUTATED | 19 | 28 | 26 | 21 |
XQ LOSS WILD-TYPE | 128 | 68 | 126 | 92 |
P value = 0.0159 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
XQ LOSS MUTATED | 18 | 29 | 18 | 29 |
XQ LOSS WILD-TYPE | 130 | 73 | 82 | 129 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
XQ LOSS MUTATED | 56 | 25 | 25 |
XQ LOSS WILD-TYPE | 106 | 193 | 172 |
P value = 0.00532 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
XQ LOSS MUTATED | 9 | 19 | 23 |
XQ LOSS WILD-TYPE | 80 | 89 | 55 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/20146438/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/20125497/GBM-TP.transferedmergedcluster.txt
-
Number of patients = 577
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.