This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 63 arm-level events and 10 molecular subtypes across 66 patients, 157 significant findings detected with P value < 0.05 and Q value < 0.25.
-
3p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
-
3q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
-
4p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
4q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
7p gain cnv correlated to 'MRNASEQ_CNMF'.
-
7q gain cnv correlated to 'MRNASEQ_CNMF'.
-
8p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
8q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
11p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
11q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
12q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
-
14q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
15q gain cnv correlated to 'MRNASEQ_CNMF'.
-
16p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
16q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
18p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
18q gain cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
19p gain cnv correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
19q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
20p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
20q gain cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
-
22q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
xp gain cnv correlated to 'MRNASEQ_CNMF'.
-
xq gain cnv correlated to 'MRNASEQ_CNMF'.
-
1p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
1q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
2p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
2q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
3p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
3q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
5p loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
5q loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
6p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
6q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
8p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
-
8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
-
9p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
-
9q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
-
10p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
10q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
13q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
16p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
16q loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
17p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
17q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
21q loss cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
xp loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
xq loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
2p loss | 46 (70%) | 20 |
0.0876 (0.275) |
1e-05 (0.000286) |
0.128 (0.34) |
0.509 (0.735) |
1e-05 (0.000286) |
1e-05 (0.000286) |
0.0815 (0.266) |
2e-05 (0.00045) |
0.0306 (0.145) |
0.00063 (0.00673) |
2q loss | 46 (70%) | 20 |
0.087 (0.275) |
1e-05 (0.000286) |
0.126 (0.34) |
0.511 (0.735) |
1e-05 (0.000286) |
1e-05 (0.000286) |
0.0838 (0.27) |
2e-05 (0.00045) |
0.0306 (0.145) |
0.00066 (0.00693) |
17p loss | 50 (76%) | 16 |
0.303 (0.539) |
1e-05 (0.000286) |
0.139 (0.353) |
0.0673 (0.236) |
1e-05 (0.000286) |
1e-05 (0.000286) |
0.0514 (0.202) |
8e-05 (0.0012) |
0.0491 (0.197) |
0.0019 (0.0159) |
17q loss | 50 (76%) | 16 |
0.3 (0.535) |
1e-05 (0.000286) |
0.14 (0.353) |
0.0689 (0.239) |
1e-05 (0.000286) |
1e-05 (0.000286) |
0.0519 (0.202) |
7e-05 (0.00108) |
0.0491 (0.197) |
0.00214 (0.0175) |
4p gain | 24 (36%) | 42 |
0.0549 (0.209) |
1 (1.00) |
0.346 (0.581) |
0.152 (0.37) |
4e-05 (0.000787) |
4e-05 (0.000787) |
0.769 (0.889) |
0.00912 (0.058) |
0.0349 (0.157) |
0.0164 (0.0927) |
4q gain | 24 (36%) | 42 |
0.055 (0.209) |
1 (1.00) |
0.343 (0.579) |
0.151 (0.37) |
2e-05 (0.00045) |
6e-05 (0.00105) |
0.768 (0.889) |
0.00925 (0.0583) |
0.0349 (0.157) |
0.0173 (0.0953) |
16p gain | 21 (32%) | 45 |
0.106 (0.306) |
1 (1.00) |
0.266 (0.504) |
0.367 (0.598) |
1e-05 (0.000286) |
7e-05 (0.00108) |
0.159 (0.379) |
0.00523 (0.0379) |
0.0312 (0.145) |
0.00705 (0.0472) |
16q gain | 21 (32%) | 45 |
0.106 (0.306) |
1 (1.00) |
0.268 (0.505) |
0.364 (0.596) |
2e-05 (0.00045) |
0.00012 (0.00172) |
0.16 (0.379) |
0.00539 (0.0386) |
0.0312 (0.145) |
0.00696 (0.0472) |
1p loss | 53 (80%) | 13 |
0.671 (0.846) |
5e-05 (0.000955) |
0.723 (0.859) |
0.595 (0.793) |
0.00046 (0.00508) |
0.00026 (0.00321) |
0.164 (0.383) |
0.00121 (0.011) |
0.176 (0.403) |
0.0037 (0.0277) |
1q loss | 52 (79%) | 14 |
0.475 (0.698) |
1e-05 (0.000286) |
0.282 (0.52) |
0.405 (0.645) |
7e-05 (0.00108) |
4e-05 (0.000787) |
0.229 (0.471) |
0.00052 (0.00565) |
0.176 (0.403) |
0.00422 (0.0313) |
6p loss | 51 (77%) | 15 |
0.332 (0.571) |
0.00012 (0.00172) |
0.161 (0.379) |
0.103 (0.303) |
7e-05 (0.00108) |
1e-05 (0.000286) |
0.349 (0.585) |
0.0011 (0.0103) |
0.176 (0.403) |
0.00024 (0.00315) |
6q loss | 51 (77%) | 15 |
0.33 (0.569) |
0.0002 (0.00274) |
0.159 (0.379) |
0.102 (0.303) |
7e-05 (0.00108) |
1e-05 (0.000286) |
0.352 (0.587) |
0.00112 (0.0104) |
0.176 (0.403) |
0.00023 (0.00308) |
10p loss | 48 (73%) | 18 |
0.343 (0.579) |
0.00031 (0.00368) |
0.0891 (0.278) |
0.107 (0.306) |
6e-05 (0.00105) |
1e-05 (0.000286) |
0.275 (0.512) |
0.00016 (0.00224) |
0.759 (0.889) |
0.0109 (0.0663) |
10q loss | 49 (74%) | 17 |
0.249 (0.494) |
0.00025 (0.00315) |
0.177 (0.403) |
0.236 (0.476) |
4e-05 (0.000787) |
1e-05 (0.000286) |
0.227 (0.469) |
0.00025 (0.00315) |
0.538 (0.749) |
0.00301 (0.0237) |
xp loss | 38 (58%) | 28 |
0.129 (0.34) |
0.00277 (0.0222) |
0.69 (0.846) |
0.719 (0.859) |
0.00029 (0.00351) |
0.00045 (0.00508) |
0.19 (0.425) |
1e-05 (0.000286) |
0.239 (0.48) |
0.0124 (0.0747) |
18p gain | 17 (26%) | 49 |
0.522 (0.739) |
0.807 (0.924) |
0.762 (0.889) |
0.657 (0.84) |
0.00192 (0.0159) |
0.0134 (0.0796) |
0.938 (0.999) |
0.0482 (0.196) |
0.341 (0.579) |
0.0481 (0.196) |
19p gain | 19 (29%) | 47 |
0.482 (0.703) |
0.274 (0.512) |
0.132 (0.343) |
0.0438 (0.184) |
0.0234 (0.121) |
0.0091 (0.058) |
0.66 (0.842) |
0.04 (0.172) |
1 (1.00) |
0.708 (0.859) |
8p loss | 9 (14%) | 57 |
1e-05 (0.000286) |
0.084 (0.27) |
0.0106 (0.065) |
0.00768 (0.0504) |
0.0528 (0.203) |
0.0394 (0.171) |
0.148 (0.366) |
0.464 (0.688) |
0.142 (0.353) |
0.322 (0.558) |
8q loss | 8 (12%) | 58 |
1e-05 (0.000286) |
0.0448 (0.186) |
0.0322 (0.148) |
0.0194 (0.102) |
0.134 (0.346) |
0.0732 (0.245) |
0.291 (0.529) |
0.527 (0.743) |
0.142 (0.353) |
0.319 (0.556) |
13q loss | 43 (65%) | 23 |
0.26 (0.498) |
0.00046 (0.00508) |
0.297 (0.533) |
0.052 (0.202) |
0.00358 (0.0272) |
6e-05 (0.00105) |
0.851 (0.941) |
0.197 (0.434) |
0.541 (0.751) |
0.00562 (0.0393) |
xq loss | 39 (59%) | 27 |
0.596 (0.793) |
0.072 (0.245) |
0.647 (0.834) |
0.538 (0.749) |
0.00674 (0.0467) |
0.00358 (0.0272) |
0.326 (0.565) |
0.00082 (0.0082) |
0.77 (0.889) |
0.037 (0.162) |
8p gain | 17 (26%) | 49 |
0.411 (0.649) |
0.419 (0.657) |
0.391 (0.623) |
0.131 (0.343) |
0.00351 (0.0272) |
0.0311 (0.145) |
0.468 (0.69) |
0.0991 (0.299) |
1 (1.00) |
0.0292 (0.145) |
8q gain | 18 (27%) | 48 |
0.341 (0.579) |
0.376 (0.611) |
0.255 (0.497) |
0.0727 (0.245) |
0.00109 (0.0103) |
0.0104 (0.0643) |
0.696 (0.846) |
0.0875 (0.275) |
0.751 (0.889) |
0.0416 (0.178) |
11p gain | 15 (23%) | 51 |
0.282 (0.52) |
0.681 (0.846) |
0.56 (0.763) |
0.0872 (0.275) |
2e-05 (0.00045) |
0.00036 (0.0042) |
0.872 (0.959) |
0.0262 (0.131) |
0.197 (0.434) |
0.0785 (0.259) |
11q gain | 15 (23%) | 51 |
0.281 (0.52) |
0.679 (0.846) |
0.212 (0.446) |
0.0876 (0.275) |
1e-05 (0.000286) |
2e-05 (0.00045) |
0.62 (0.81) |
0.0189 (0.1) |
0.197 (0.434) |
0.103 (0.303) |
14q gain | 21 (32%) | 45 |
0.108 (0.307) |
0.828 (0.926) |
0.201 (0.439) |
0.293 (0.529) |
0.00071 (0.00733) |
0.00494 (0.0362) |
0.427 (0.658) |
0.0565 (0.212) |
0.0312 (0.145) |
0.0781 (0.259) |
19q gain | 17 (26%) | 49 |
0.517 (0.735) |
0.312 (0.55) |
0.206 (0.44) |
0.129 (0.34) |
0.00138 (0.0124) |
0.00158 (0.0139) |
0.411 (0.649) |
0.0463 (0.191) |
1 (1.00) |
0.657 (0.84) |
20p gain | 20 (30%) | 46 |
0.214 (0.446) |
0.595 (0.793) |
0.427 (0.658) |
0.139 (0.353) |
0.0294 (0.145) |
0.0312 (0.145) |
0.71 (0.859) |
0.0312 (0.145) |
0.535 (0.748) |
0.183 (0.413) |
3q loss | 8 (12%) | 58 |
0.0203 (0.106) |
0.364 (0.596) |
0.895 (0.974) |
0.387 (0.621) |
0.0258 (0.13) |
0.00164 (0.0142) |
0.573 (0.775) |
0.182 (0.413) |
0.142 (0.353) |
0.687 (0.846) |
5p loss | 10 (15%) | 56 |
0.0982 (0.299) |
0.253 (0.497) |
1 (1.00) |
0.821 (0.926) |
0.00084 (0.00827) |
0.0188 (0.1) |
0.425 (0.658) |
0.0137 (0.0805) |
0.451 (0.677) |
0.342 (0.579) |
5q loss | 10 (15%) | 56 |
0.0996 (0.299) |
0.255 (0.497) |
1 (1.00) |
0.821 (0.926) |
0.0008 (0.00813) |
0.0189 (0.1) |
0.427 (0.658) |
0.0151 (0.088) |
0.451 (0.677) |
0.343 (0.579) |
18q gain | 16 (24%) | 50 |
0.64 (0.83) |
0.927 (0.993) |
0.931 (0.996) |
0.553 (0.758) |
0.00096 (0.0093) |
0.019 (0.1) |
0.823 (0.926) |
0.0509 (0.202) |
0.119 (0.326) |
0.0629 (0.225) |
20q gain | 21 (32%) | 45 |
0.228 (0.47) |
0.387 (0.621) |
0.29 (0.529) |
0.108 (0.307) |
0.0699 (0.241) |
0.0174 (0.0953) |
0.678 (0.846) |
0.036 (0.161) |
0.762 (0.889) |
0.0995 (0.299) |
22q gain | 19 (29%) | 47 |
0.901 (0.974) |
0.714 (0.859) |
0.257 (0.497) |
0.242 (0.484) |
0.0687 (0.239) |
0.362 (0.596) |
0.552 (0.758) |
0.0242 (0.123) |
1 (1.00) |
0.00897 (0.058) |
3p loss | 9 (14%) | 57 |
0.0362 (0.161) |
0.894 (0.974) |
0.817 (0.926) |
0.169 (0.392) |
0.0632 (0.225) |
0.00278 (0.0222) |
0.904 (0.974) |
0.203 (0.439) |
0.381 (0.613) |
0.846 (0.939) |
16p loss | 4 (6%) | 62 |
0.684 (0.846) |
0.518 (0.735) |
0.675 (0.846) |
0.339 (0.579) |
0.0241 (0.123) |
0.0367 (0.162) |
0.679 (0.846) |
0.0895 (0.278) |
0.286 (0.525) |
0.985 (1.00) |
16q loss | 5 (8%) | 61 |
0.72 (0.859) |
0.39 (0.623) |
0.851 (0.941) |
0.225 (0.466) |
0.00557 (0.0393) |
0.00698 (0.0472) |
0.427 (0.658) |
0.05 (0.199) |
0.0724 (0.245) |
0.69 (0.846) |
21q loss | 35 (53%) | 31 |
0.775 (0.893) |
0.0101 (0.0628) |
0.126 (0.34) |
0.189 (0.425) |
0.25 (0.496) |
0.196 (0.434) |
1 (1.00) |
0.129 (0.34) |
1 (1.00) |
0.0434 (0.183) |
3p gain | 8 (12%) | 58 |
0.269 (0.506) |
0.529 (0.743) |
0.459 (0.683) |
0.0449 (0.186) |
0.951 (1.00) |
0.648 (0.834) |
0.516 (0.735) |
0.692 (0.846) |
0.669 (0.846) |
0.603 (0.795) |
3q gain | 8 (12%) | 58 |
0.271 (0.508) |
0.527 (0.743) |
0.458 (0.683) |
0.0433 (0.183) |
0.953 (1.00) |
0.646 (0.834) |
0.514 (0.735) |
0.693 (0.846) |
0.669 (0.846) |
0.602 (0.795) |
7p gain | 24 (36%) | 42 |
0.151 (0.37) |
1 (1.00) |
0.0973 (0.299) |
0.139 (0.353) |
0.016 (0.0917) |
0.0615 (0.224) |
0.901 (0.974) |
0.118 (0.326) |
0.766 (0.889) |
0.101 (0.3) |
7q gain | 24 (36%) | 42 |
0.151 (0.37) |
1 (1.00) |
0.0978 (0.299) |
0.136 (0.35) |
0.016 (0.0917) |
0.0608 (0.223) |
0.901 (0.974) |
0.116 (0.324) |
0.766 (0.889) |
0.101 (0.3) |
12q gain | 20 (30%) | 46 |
0.445 (0.676) |
0.593 (0.793) |
0.787 (0.905) |
0.412 (0.649) |
0.147 (0.364) |
0.0821 (0.267) |
0.943 (1.00) |
0.0328 (0.15) |
0.235 (0.476) |
0.132 (0.343) |
15q gain | 21 (32%) | 45 |
0.106 (0.306) |
0.827 (0.926) |
0.2 (0.438) |
0.293 (0.529) |
0.00167 (0.0142) |
0.0633 (0.225) |
0.754 (0.889) |
0.213 (0.446) |
0.762 (0.889) |
0.473 (0.697) |
xp gain | 7 (11%) | 59 |
0.81 (0.924) |
0.317 (0.554) |
0.46 (0.683) |
0.304 (0.539) |
0.00159 (0.0139) |
0.0528 (0.203) |
0.157 (0.379) |
0.109 (0.308) |
0.381 (0.613) |
0.123 (0.335) |
xq gain | 6 (9%) | 60 |
1 (1.00) |
0.722 (0.859) |
0.482 (0.703) |
0.291 (0.529) |
0.00726 (0.0481) |
0.121 (0.332) |
0.265 (0.502) |
0.119 (0.326) |
0.142 (0.353) |
0.0706 (0.242) |
9p loss | 10 (15%) | 56 |
1 (1.00) |
0.902 (0.974) |
0.514 (0.735) |
0.552 (0.758) |
0.0643 (0.228) |
0.0165 (0.0927) |
0.91 (0.977) |
0.605 (0.796) |
0.695 (0.846) |
0.891 (0.974) |
9q loss | 10 (15%) | 56 |
1 (1.00) |
0.904 (0.974) |
0.511 (0.735) |
0.555 (0.759) |
0.0631 (0.225) |
0.0171 (0.0952) |
0.91 (0.977) |
0.6 (0.794) |
0.695 (0.846) |
0.891 (0.974) |
5p gain | 8 (12%) | 58 |
0.424 (0.658) |
0.682 (0.846) |
0.709 (0.859) |
0.198 (0.434) |
0.448 (0.676) |
0.447 (0.676) |
0.362 (0.596) |
0.0607 (0.223) |
1 (1.00) |
0.127 (0.34) |
5q gain | 8 (12%) | 58 |
0.423 (0.658) |
0.681 (0.846) |
0.712 (0.859) |
0.196 (0.434) |
0.447 (0.676) |
0.446 (0.676) |
0.364 (0.596) |
0.0597 (0.221) |
1 (1.00) |
0.127 (0.34) |
9p gain | 10 (15%) | 56 |
1 (1.00) |
1 (1.00) |
0.258 (0.497) |
0.235 (0.476) |
0.724 (0.859) |
0.813 (0.925) |
0.833 (0.927) |
0.6 (0.794) |
1 (1.00) |
0.264 (0.502) |
9q gain | 10 (15%) | 56 |
1 (1.00) |
1 (1.00) |
0.256 (0.497) |
0.235 (0.476) |
0.722 (0.859) |
0.813 (0.925) |
0.832 (0.927) |
0.6 (0.794) |
1 (1.00) |
0.261 (0.499) |
10p gain | 4 (6%) | 62 |
0.438 (0.671) |
0.16 (0.379) |
1 (1.00) |
0.552 (0.758) |
0.512 (0.735) |
0.205 (0.44) |
1 (1.00) |
0.167 (0.388) |
1 (1.00) |
0.459 (0.683) |
12p gain | 19 (29%) | 47 |
0.479 (0.702) |
0.764 (0.889) |
0.836 (0.929) |
0.467 (0.69) |
0.0785 (0.259) |
0.157 (0.379) |
1 (1.00) |
0.0668 (0.235) |
0.213 (0.446) |
0.155 (0.375) |
21q gain | 4 (6%) | 62 |
0.437 (0.671) |
0.162 (0.38) |
0.555 (0.759) |
0.809 (0.924) |
0.517 (0.735) |
0.106 (0.306) |
0.679 (0.846) |
0.165 (0.386) |
1 (1.00) |
0.41 (0.649) |
11p loss | 7 (11%) | 59 |
0.627 (0.816) |
0.574 (0.775) |
0.529 (0.743) |
0.253 (0.497) |
0.11 (0.31) |
0.317 (0.554) |
0.202 (0.439) |
0.937 (0.999) |
0.381 (0.613) |
0.575 (0.775) |
11q loss | 7 (11%) | 59 |
0.629 (0.817) |
0.572 (0.775) |
0.533 (0.746) |
0.253 (0.497) |
0.112 (0.313) |
0.317 (0.554) |
0.205 (0.44) |
0.938 (0.999) |
0.381 (0.613) |
0.576 (0.775) |
18p loss | 8 (12%) | 58 |
0.677 (0.846) |
0.0969 (0.299) |
0.352 (0.587) |
0.26 (0.498) |
0.315 (0.554) |
0.211 (0.446) |
0.716 (0.859) |
0.95 (1.00) |
0.669 (0.846) |
0.77 (0.889) |
18q loss | 10 (15%) | 56 |
0.622 (0.812) |
0.0802 (0.263) |
0.257 (0.497) |
0.236 (0.476) |
0.446 (0.676) |
0.279 (0.518) |
0.574 (0.775) |
0.863 (0.952) |
0.695 (0.846) |
0.514 (0.735) |
19q loss | 3 (5%) | 63 |
0.646 (0.834) |
0.765 (0.889) |
0.613 (0.804) |
0.31 (0.549) |
0.767 (0.889) |
0.824 (0.926) |
0.514 (0.735) |
0.865 (0.953) |
1 (1.00) |
0.82 (0.926) |
20p loss | 4 (6%) | 62 |
0.3 (0.535) |
0.806 (0.924) |
0.365 (0.596) |
0.337 (0.579) |
0.204 (0.44) |
0.212 (0.446) |
0.451 (0.677) |
0.655 (0.84) |
0.286 (0.525) |
0.55 (0.758) |
20q loss | 3 (5%) | 63 |
1 (1.00) |
0.419 (0.657) |
0.614 (0.804) |
0.592 (0.793) |
0.225 (0.466) |
0.0587 (0.219) |
0.294 (0.529) |
0.825 (0.926) |
0.056 (0.211) |
0.716 (0.859) |
22q loss | 8 (12%) | 58 |
0.829 (0.926) |
0.132 (0.343) |
0.879 (0.965) |
1 (1.00) |
0.247 (0.493) |
0.234 (0.476) |
0.898 (0.974) |
0.214 (0.446) |
0.687 (0.846) |
0.354 (0.588) |
P value = 0.0449 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
3P GAIN MUTATED | 7 | 1 | 0 |
3P GAIN WILD-TYPE | 22 | 19 | 14 |
P value = 0.0433 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
3Q GAIN MUTATED | 7 | 1 | 0 |
3Q GAIN WILD-TYPE | 22 | 19 | 14 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
4P GAIN MUTATED | 4 | 17 | 2 | 1 |
4P GAIN WILD-TYPE | 15 | 5 | 13 | 9 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
4P GAIN MUTATED | 4 | 14 | 3 | 1 | 1 | 1 | 0 |
4P GAIN WILD-TYPE | 15 | 2 | 4 | 5 | 9 | 3 | 4 |
P value = 0.00912 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
4P GAIN MUTATED | 2 | 8 | 5 | 3 | 3 | 2 | 1 |
4P GAIN WILD-TYPE | 16 | 3 | 7 | 3 | 2 | 3 | 8 |
P value = 0.0349 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
4P GAIN MUTATED | 4 | 16 |
4P GAIN WILD-TYPE | 15 | 13 |
P value = 0.0164 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
4P GAIN MUTATED | 4 | 6 | 3 | 4 | 0 | 2 | 1 | 0 |
4P GAIN WILD-TYPE | 6 | 0 | 2 | 4 | 4 | 4 | 4 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
4Q GAIN MUTATED | 4 | 17 | 2 | 1 |
4Q GAIN WILD-TYPE | 15 | 5 | 13 | 9 |
P value = 6e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
4Q GAIN MUTATED | 4 | 14 | 3 | 1 | 1 | 1 | 0 |
4Q GAIN WILD-TYPE | 15 | 2 | 4 | 5 | 9 | 3 | 4 |
P value = 0.00925 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
4Q GAIN MUTATED | 2 | 8 | 5 | 3 | 3 | 2 | 1 |
4Q GAIN WILD-TYPE | 16 | 3 | 7 | 3 | 2 | 3 | 8 |
P value = 0.0349 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
4Q GAIN MUTATED | 4 | 16 |
4Q GAIN WILD-TYPE | 15 | 13 |
P value = 0.0173 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
4Q GAIN MUTATED | 4 | 6 | 3 | 4 | 0 | 2 | 1 | 0 |
4Q GAIN WILD-TYPE | 6 | 0 | 2 | 4 | 4 | 4 | 4 | 4 |
P value = 0.016 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
7P GAIN MUTATED | 4 | 14 | 4 | 2 |
7P GAIN WILD-TYPE | 15 | 8 | 11 | 8 |
P value = 0.016 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
7Q GAIN MUTATED | 4 | 14 | 4 | 2 |
7Q GAIN WILD-TYPE | 15 | 8 | 11 | 8 |
P value = 0.00351 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
8P GAIN MUTATED | 2 | 12 | 2 | 1 |
8P GAIN WILD-TYPE | 17 | 10 | 13 | 9 |
P value = 0.0311 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
8P GAIN MUTATED | 2 | 9 | 3 | 1 | 2 | 0 | 0 |
8P GAIN WILD-TYPE | 17 | 7 | 4 | 5 | 8 | 4 | 4 |
P value = 0.0292 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
8P GAIN MUTATED | 2 | 5 | 0 | 3 | 0 | 3 | 1 | 0 |
8P GAIN WILD-TYPE | 8 | 1 | 5 | 5 | 4 | 3 | 4 | 4 |
P value = 0.00109 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
8Q GAIN MUTATED | 2 | 13 | 2 | 1 |
8Q GAIN WILD-TYPE | 17 | 9 | 13 | 9 |
P value = 0.0104 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
8Q GAIN MUTATED | 2 | 10 | 3 | 1 | 2 | 0 | 0 |
8Q GAIN WILD-TYPE | 17 | 6 | 4 | 5 | 8 | 4 | 4 |
P value = 0.0416 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
8Q GAIN MUTATED | 3 | 5 | 0 | 3 | 0 | 3 | 1 | 0 |
8Q GAIN WILD-TYPE | 7 | 1 | 5 | 5 | 4 | 3 | 4 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
11P GAIN MUTATED | 1 | 13 | 1 | 0 |
11P GAIN WILD-TYPE | 18 | 9 | 14 | 10 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
11P GAIN MUTATED | 1 | 11 | 1 | 1 | 1 | 0 | 0 |
11P GAIN WILD-TYPE | 18 | 5 | 6 | 5 | 9 | 4 | 4 |
P value = 0.0262 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
11P GAIN MUTATED | 1 | 4 | 3 | 2 | 3 | 2 | 0 |
11P GAIN WILD-TYPE | 17 | 7 | 9 | 4 | 2 | 3 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
11Q GAIN MUTATED | 1 | 14 | 0 | 0 |
11Q GAIN WILD-TYPE | 18 | 8 | 15 | 10 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
11Q GAIN MUTATED | 1 | 12 | 1 | 1 | 0 | 0 | 0 |
11Q GAIN WILD-TYPE | 18 | 4 | 6 | 5 | 10 | 4 | 4 |
P value = 0.0189 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
11Q GAIN MUTATED | 1 | 5 | 3 | 2 | 3 | 1 | 0 |
11Q GAIN WILD-TYPE | 17 | 6 | 9 | 4 | 2 | 4 | 9 |
P value = 0.0328 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
12Q GAIN MUTATED | 1 | 7 | 4 | 1 | 2 | 2 | 3 |
12Q GAIN WILD-TYPE | 17 | 4 | 8 | 5 | 3 | 3 | 6 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
14Q GAIN MUTATED | 4 | 14 | 3 | 0 |
14Q GAIN WILD-TYPE | 15 | 8 | 12 | 10 |
P value = 0.00494 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
14Q GAIN MUTATED | 4 | 12 | 1 | 1 | 2 | 1 | 0 |
14Q GAIN WILD-TYPE | 15 | 4 | 6 | 5 | 8 | 3 | 4 |
P value = 0.0312 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
14Q GAIN MUTATED | 3 | 14 |
14Q GAIN WILD-TYPE | 16 | 15 |
P value = 0.00167 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
15Q GAIN MUTATED | 3 | 13 | 5 | 0 |
15Q GAIN WILD-TYPE | 16 | 9 | 10 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
16P GAIN MUTATED | 4 | 16 | 1 | 0 |
16P GAIN WILD-TYPE | 15 | 6 | 14 | 10 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16P GAIN MUTATED | 4 | 13 | 2 | 1 | 0 | 1 | 0 |
16P GAIN WILD-TYPE | 15 | 3 | 5 | 5 | 10 | 3 | 4 |
P value = 0.00523 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
16P GAIN MUTATED | 2 | 7 | 5 | 3 | 3 | 1 | 0 |
16P GAIN WILD-TYPE | 16 | 4 | 7 | 3 | 2 | 4 | 9 |
P value = 0.0312 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
16P GAIN MUTATED | 3 | 14 |
16P GAIN WILD-TYPE | 16 | 15 |
P value = 0.00705 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
16P GAIN MUTATED | 4 | 6 | 3 | 2 | 0 | 1 | 1 | 0 |
16P GAIN WILD-TYPE | 6 | 0 | 2 | 6 | 4 | 5 | 4 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
16Q GAIN MUTATED | 4 | 16 | 1 | 0 |
16Q GAIN WILD-TYPE | 15 | 6 | 14 | 10 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16Q GAIN MUTATED | 4 | 13 | 2 | 1 | 0 | 1 | 0 |
16Q GAIN WILD-TYPE | 15 | 3 | 5 | 5 | 10 | 3 | 4 |
P value = 0.00539 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
16Q GAIN MUTATED | 2 | 7 | 5 | 3 | 3 | 1 | 0 |
16Q GAIN WILD-TYPE | 16 | 4 | 7 | 3 | 2 | 4 | 9 |
P value = 0.0312 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
16Q GAIN MUTATED | 3 | 14 |
16Q GAIN WILD-TYPE | 16 | 15 |
P value = 0.00696 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
16Q GAIN MUTATED | 4 | 6 | 3 | 2 | 0 | 1 | 1 | 0 |
16Q GAIN WILD-TYPE | 6 | 0 | 2 | 6 | 4 | 5 | 4 | 4 |
P value = 0.00192 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
18P GAIN MUTATED | 1 | 12 | 2 | 2 |
18P GAIN WILD-TYPE | 18 | 10 | 13 | 8 |
P value = 0.0134 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
18P GAIN MUTATED | 1 | 9 | 3 | 1 | 1 | 1 | 1 |
18P GAIN WILD-TYPE | 18 | 7 | 4 | 5 | 9 | 3 | 3 |
P value = 0.0482 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
18P GAIN MUTATED | 1 | 6 | 2 | 3 | 1 | 1 | 3 |
18P GAIN WILD-TYPE | 17 | 5 | 10 | 3 | 4 | 4 | 6 |
P value = 0.0481 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
18P GAIN MUTATED | 3 | 5 | 2 | 1 | 0 | 3 | 0 | 1 |
18P GAIN WILD-TYPE | 7 | 1 | 3 | 7 | 4 | 3 | 5 | 3 |
P value = 0.00096 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
18Q GAIN MUTATED | 1 | 12 | 2 | 1 |
18Q GAIN WILD-TYPE | 18 | 10 | 13 | 9 |
P value = 0.019 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
18Q GAIN MUTATED | 1 | 9 | 2 | 1 | 1 | 1 | 1 |
18Q GAIN WILD-TYPE | 18 | 7 | 5 | 5 | 9 | 3 | 3 |
P value = 0.0438 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
19P GAIN MUTATED | 12 | 2 | 5 |
19P GAIN WILD-TYPE | 17 | 18 | 9 |
P value = 0.0234 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
19P GAIN MUTATED | 2 | 11 | 5 | 1 |
19P GAIN WILD-TYPE | 17 | 11 | 10 | 9 |
P value = 0.0091 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
19P GAIN MUTATED | 2 | 10 | 2 | 0 | 4 | 1 | 0 |
19P GAIN WILD-TYPE | 17 | 6 | 5 | 6 | 6 | 3 | 4 |
P value = 0.04 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
19P GAIN MUTATED | 1 | 6 | 4 | 1 | 2 | 3 | 2 |
19P GAIN WILD-TYPE | 17 | 5 | 8 | 5 | 3 | 2 | 7 |
P value = 0.00138 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
19Q GAIN MUTATED | 1 | 11 | 5 | 0 |
19Q GAIN WILD-TYPE | 18 | 11 | 10 | 10 |
P value = 0.00158 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
19Q GAIN MUTATED | 1 | 10 | 1 | 0 | 4 | 1 | 0 |
19Q GAIN WILD-TYPE | 18 | 6 | 6 | 6 | 6 | 3 | 4 |
P value = 0.0463 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
19Q GAIN MUTATED | 1 | 5 | 4 | 1 | 2 | 3 | 1 |
19Q GAIN WILD-TYPE | 17 | 6 | 8 | 5 | 3 | 2 | 8 |
P value = 0.0294 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
20P GAIN MUTATED | 4 | 12 | 3 | 1 |
20P GAIN WILD-TYPE | 15 | 10 | 12 | 9 |
P value = 0.0312 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
20P GAIN MUTATED | 4 | 10 | 3 | 0 | 2 | 1 | 0 |
20P GAIN WILD-TYPE | 15 | 6 | 4 | 6 | 8 | 3 | 4 |
P value = 0.0312 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
20P GAIN MUTATED | 1 | 6 | 5 | 1 | 3 | 2 | 2 |
20P GAIN WILD-TYPE | 17 | 5 | 7 | 5 | 2 | 3 | 7 |
P value = 0.0174 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
20Q GAIN MUTATED | 4 | 10 | 4 | 0 | 2 | 1 | 0 |
20Q GAIN WILD-TYPE | 15 | 6 | 3 | 6 | 8 | 3 | 4 |
P value = 0.036 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
20Q GAIN MUTATED | 1 | 6 | 5 | 1 | 3 | 2 | 3 |
20Q GAIN WILD-TYPE | 17 | 5 | 7 | 5 | 2 | 3 | 6 |
P value = 0.0242 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
22Q GAIN MUTATED | 1 | 7 | 5 | 1 | 2 | 1 | 2 |
22Q GAIN WILD-TYPE | 17 | 4 | 7 | 5 | 3 | 4 | 7 |
P value = 0.00897 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
22Q GAIN MUTATED | 3 | 5 | 3 | 0 | 0 | 3 | 2 | 0 |
22Q GAIN WILD-TYPE | 7 | 1 | 2 | 8 | 4 | 3 | 3 | 4 |
P value = 0.00159 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
XP GAIN MUTATED | 0 | 7 | 0 | 0 |
XP GAIN WILD-TYPE | 19 | 15 | 15 | 10 |
P value = 0.00726 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
XQ GAIN MUTATED | 0 | 6 | 0 | 0 |
XQ GAIN WILD-TYPE | 19 | 16 | 15 | 10 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
1P LOSS MUTATED | 17 | 32 | 4 |
1P LOSS WILD-TYPE | 1 | 3 | 9 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
1P LOSS MUTATED | 19 | 16 | 14 | 4 |
1P LOSS WILD-TYPE | 0 | 6 | 1 | 6 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
1P LOSS MUTATED | 19 | 11 | 6 | 4 | 9 | 4 | 0 |
1P LOSS WILD-TYPE | 0 | 5 | 1 | 2 | 1 | 0 | 4 |
P value = 0.00121 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
1P LOSS MUTATED | 18 | 8 | 11 | 4 | 4 | 5 | 3 |
1P LOSS WILD-TYPE | 0 | 3 | 1 | 2 | 1 | 0 | 6 |
P value = 0.0037 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
1P LOSS MUTATED | 8 | 3 | 5 | 8 | 4 | 4 | 4 | 0 |
1P LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 2 | 1 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
1Q LOSS MUTATED | 17 | 32 | 3 |
1Q LOSS WILD-TYPE | 1 | 3 | 10 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
1Q LOSS MUTATED | 19 | 16 | 14 | 3 |
1Q LOSS WILD-TYPE | 0 | 6 | 1 | 7 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
1Q LOSS MUTATED | 19 | 11 | 5 | 3 | 10 | 4 | 0 |
1Q LOSS WILD-TYPE | 0 | 5 | 2 | 3 | 0 | 0 | 4 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
1Q LOSS MUTATED | 18 | 8 | 11 | 3 | 4 | 5 | 3 |
1Q LOSS WILD-TYPE | 0 | 3 | 1 | 3 | 1 | 0 | 6 |
P value = 0.00422 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
1Q LOSS MUTATED | 8 | 3 | 5 | 8 | 4 | 4 | 4 | 0 |
1Q LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 2 | 1 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
2P LOSS MUTATED | 17 | 28 | 1 |
2P LOSS WILD-TYPE | 1 | 7 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
2P LOSS MUTATED | 19 | 14 | 13 | 0 |
2P LOSS WILD-TYPE | 0 | 8 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
2P LOSS MUTATED | 19 | 10 | 4 | 0 | 10 | 3 | 0 |
2P LOSS WILD-TYPE | 0 | 6 | 3 | 6 | 0 | 1 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
2P LOSS MUTATED | 18 | 7 | 10 | 2 | 3 | 5 | 1 |
2P LOSS WILD-TYPE | 0 | 4 | 2 | 4 | 2 | 0 | 8 |
P value = 0.0306 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
2P LOSS MUTATED | 9 | 23 |
2P LOSS WILD-TYPE | 10 | 6 |
P value = 0.00063 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
2P LOSS MUTATED | 8 | 2 | 5 | 8 | 4 | 3 | 2 | 0 |
2P LOSS WILD-TYPE | 2 | 4 | 0 | 0 | 0 | 3 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
2Q LOSS MUTATED | 17 | 28 | 1 |
2Q LOSS WILD-TYPE | 1 | 7 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
2Q LOSS MUTATED | 19 | 14 | 13 | 0 |
2Q LOSS WILD-TYPE | 0 | 8 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
2Q LOSS MUTATED | 19 | 10 | 4 | 0 | 10 | 3 | 0 |
2Q LOSS WILD-TYPE | 0 | 6 | 3 | 6 | 0 | 1 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
2Q LOSS MUTATED | 18 | 7 | 10 | 2 | 3 | 5 | 1 |
2Q LOSS WILD-TYPE | 0 | 4 | 2 | 4 | 2 | 0 | 8 |
P value = 0.0306 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
2Q LOSS MUTATED | 9 | 23 |
2Q LOSS WILD-TYPE | 10 | 6 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
2Q LOSS MUTATED | 8 | 2 | 5 | 8 | 4 | 3 | 2 | 0 |
2Q LOSS WILD-TYPE | 2 | 4 | 0 | 0 | 0 | 3 | 3 | 4 |
P value = 0.0362 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 47 | 14 |
3P LOSS MUTATED | 0 | 4 | 5 |
3P LOSS WILD-TYPE | 5 | 43 | 9 |
P value = 0.00278 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
3P LOSS MUTATED | 0 | 6 | 0 | 1 | 0 | 2 | 0 |
3P LOSS WILD-TYPE | 19 | 10 | 7 | 5 | 10 | 2 | 4 |
P value = 0.0203 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 47 | 14 |
3Q LOSS MUTATED | 0 | 3 | 5 |
3Q LOSS WILD-TYPE | 5 | 44 | 9 |
P value = 0.0258 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
3Q LOSS MUTATED | 0 | 6 | 2 | 0 |
3Q LOSS WILD-TYPE | 19 | 16 | 13 | 10 |
P value = 0.00164 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
3Q LOSS MUTATED | 0 | 6 | 0 | 0 | 0 | 2 | 0 |
3Q LOSS WILD-TYPE | 19 | 10 | 7 | 6 | 10 | 2 | 4 |
P value = 0.00084 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
5P LOSS MUTATED | 1 | 9 | 0 | 0 |
5P LOSS WILD-TYPE | 18 | 13 | 15 | 10 |
P value = 0.0188 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
5P LOSS MUTATED | 1 | 6 | 3 | 0 | 0 | 0 | 0 |
5P LOSS WILD-TYPE | 18 | 10 | 4 | 6 | 10 | 4 | 4 |
P value = 0.0137 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
5P LOSS MUTATED | 0 | 2 | 3 | 1 | 3 | 1 | 0 |
5P LOSS WILD-TYPE | 18 | 9 | 9 | 5 | 2 | 4 | 9 |
P value = 8e-04 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
5Q LOSS MUTATED | 1 | 9 | 0 | 0 |
5Q LOSS WILD-TYPE | 18 | 13 | 15 | 10 |
P value = 0.0189 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
5Q LOSS MUTATED | 1 | 6 | 3 | 0 | 0 | 0 | 0 |
5Q LOSS WILD-TYPE | 18 | 10 | 4 | 6 | 10 | 4 | 4 |
P value = 0.0151 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
5Q LOSS MUTATED | 0 | 2 | 3 | 1 | 3 | 1 | 0 |
5Q LOSS WILD-TYPE | 18 | 9 | 9 | 5 | 2 | 4 | 9 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
6P LOSS MUTATED | 17 | 30 | 4 |
6P LOSS WILD-TYPE | 1 | 5 | 9 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
6P LOSS MUTATED | 19 | 15 | 14 | 3 |
6P LOSS WILD-TYPE | 0 | 7 | 1 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
6P LOSS MUTATED | 19 | 11 | 6 | 1 | 10 | 4 | 0 |
6P LOSS WILD-TYPE | 0 | 5 | 1 | 5 | 0 | 0 | 4 |
P value = 0.0011 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
6P LOSS MUTATED | 18 | 8 | 10 | 3 | 4 | 5 | 3 |
6P LOSS WILD-TYPE | 0 | 3 | 2 | 3 | 1 | 0 | 6 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
6P LOSS MUTATED | 8 | 3 | 5 | 8 | 4 | 6 | 2 | 0 |
6P LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 3 | 4 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
6Q LOSS MUTATED | 17 | 30 | 4 |
6Q LOSS WILD-TYPE | 1 | 5 | 9 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
6Q LOSS MUTATED | 19 | 15 | 14 | 3 |
6Q LOSS WILD-TYPE | 0 | 7 | 1 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
6Q LOSS MUTATED | 19 | 11 | 6 | 1 | 10 | 4 | 0 |
6Q LOSS WILD-TYPE | 0 | 5 | 1 | 5 | 0 | 0 | 4 |
P value = 0.00112 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
6Q LOSS MUTATED | 18 | 8 | 10 | 3 | 4 | 5 | 3 |
6Q LOSS WILD-TYPE | 0 | 3 | 2 | 3 | 1 | 0 | 6 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
6Q LOSS MUTATED | 8 | 3 | 5 | 8 | 4 | 6 | 2 | 0 |
6Q LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 47 | 14 |
8P LOSS MUTATED | 0 | 0 | 9 |
8P LOSS WILD-TYPE | 5 | 47 | 5 |
P value = 0.0106 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 26 | 17 | 20 |
8P LOSS MUTATED | 1 | 1 | 7 |
8P LOSS WILD-TYPE | 25 | 16 | 13 |
P value = 0.00768 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
8P LOSS MUTATED | 1 | 7 | 1 |
8P LOSS WILD-TYPE | 28 | 13 | 13 |
P value = 0.0394 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
8P LOSS MUTATED | 6 | 1 | 0 | 0 | 0 | 2 | 0 |
8P LOSS WILD-TYPE | 13 | 15 | 7 | 6 | 10 | 2 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 47 | 14 |
8Q LOSS MUTATED | 0 | 0 | 8 |
8Q LOSS WILD-TYPE | 5 | 47 | 6 |
P value = 0.0448 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
8Q LOSS MUTATED | 5 | 3 | 0 |
8Q LOSS WILD-TYPE | 13 | 32 | 13 |
P value = 0.0322 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 26 | 17 | 20 |
8Q LOSS MUTATED | 1 | 1 | 6 |
8Q LOSS WILD-TYPE | 25 | 16 | 14 |
P value = 0.0194 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
8Q LOSS MUTATED | 1 | 6 | 1 |
8Q LOSS WILD-TYPE | 28 | 14 | 13 |
P value = 0.0165 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
9P LOSS MUTATED | 0 | 3 | 4 | 1 | 1 | 1 | 0 |
9P LOSS WILD-TYPE | 19 | 13 | 3 | 5 | 9 | 3 | 4 |
P value = 0.0171 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
9Q LOSS MUTATED | 0 | 3 | 4 | 1 | 1 | 1 | 0 |
9Q LOSS WILD-TYPE | 19 | 13 | 3 | 5 | 9 | 3 | 4 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
10P LOSS MUTATED | 17 | 27 | 4 |
10P LOSS WILD-TYPE | 1 | 8 | 9 |
P value = 6e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
10P LOSS MUTATED | 19 | 13 | 13 | 3 |
10P LOSS WILD-TYPE | 0 | 9 | 2 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
10P LOSS MUTATED | 19 | 8 | 6 | 2 | 10 | 3 | 0 |
10P LOSS WILD-TYPE | 0 | 8 | 1 | 4 | 0 | 1 | 4 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
10P LOSS MUTATED | 18 | 6 | 11 | 2 | 4 | 4 | 3 |
10P LOSS WILD-TYPE | 0 | 5 | 1 | 4 | 1 | 1 | 6 |
P value = 0.0109 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
10P LOSS MUTATED | 8 | 2 | 4 | 7 | 4 | 5 | 2 | 0 |
10P LOSS WILD-TYPE | 2 | 4 | 1 | 1 | 0 | 1 | 3 | 4 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
10Q LOSS MUTATED | 17 | 28 | 4 |
10Q LOSS WILD-TYPE | 1 | 7 | 9 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
10Q LOSS MUTATED | 19 | 13 | 14 | 3 |
10Q LOSS WILD-TYPE | 0 | 9 | 1 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
10Q LOSS MUTATED | 19 | 8 | 6 | 2 | 10 | 4 | 0 |
10Q LOSS WILD-TYPE | 0 | 8 | 1 | 4 | 0 | 0 | 4 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
10Q LOSS MUTATED | 18 | 7 | 11 | 2 | 4 | 4 | 3 |
10Q LOSS WILD-TYPE | 0 | 4 | 1 | 4 | 1 | 1 | 6 |
P value = 0.00301 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
10Q LOSS MUTATED | 8 | 2 | 5 | 7 | 4 | 5 | 2 | 0 |
10Q LOSS WILD-TYPE | 2 | 4 | 0 | 1 | 0 | 1 | 3 | 4 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
13Q LOSS MUTATED | 11 | 29 | 3 |
13Q LOSS WILD-TYPE | 7 | 6 | 10 |
P value = 0.00358 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
13Q LOSS MUTATED | 15 | 13 | 13 | 2 |
13Q LOSS WILD-TYPE | 4 | 9 | 2 | 8 |
P value = 6e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
13Q LOSS MUTATED | 15 | 10 | 5 | 0 | 10 | 3 | 0 |
13Q LOSS WILD-TYPE | 4 | 6 | 2 | 6 | 0 | 1 | 4 |
P value = 0.00562 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
13Q LOSS MUTATED | 7 | 3 | 2 | 8 | 4 | 5 | 2 | 0 |
13Q LOSS WILD-TYPE | 3 | 3 | 3 | 0 | 0 | 1 | 3 | 4 |
P value = 0.0241 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
16P LOSS MUTATED | 0 | 0 | 3 | 1 |
16P LOSS WILD-TYPE | 19 | 22 | 12 | 9 |
P value = 0.0367 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16P LOSS MUTATED | 0 | 0 | 1 | 0 | 3 | 0 | 0 |
16P LOSS WILD-TYPE | 19 | 16 | 6 | 6 | 7 | 4 | 4 |
P value = 0.00557 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
16Q LOSS MUTATED | 0 | 0 | 4 | 1 |
16Q LOSS WILD-TYPE | 19 | 22 | 11 | 9 |
P value = 0.00698 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16Q LOSS MUTATED | 0 | 0 | 1 | 0 | 4 | 0 | 0 |
16Q LOSS WILD-TYPE | 19 | 16 | 6 | 6 | 6 | 4 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
17P LOSS MUTATED | 17 | 31 | 2 |
17P LOSS WILD-TYPE | 1 | 4 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
17P LOSS MUTATED | 19 | 16 | 14 | 1 |
17P LOSS WILD-TYPE | 0 | 6 | 1 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
17P LOSS MUTATED | 19 | 11 | 6 | 0 | 10 | 4 | 0 |
17P LOSS WILD-TYPE | 0 | 5 | 1 | 6 | 0 | 0 | 4 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
17P LOSS MUTATED | 18 | 8 | 11 | 3 | 3 | 5 | 2 |
17P LOSS WILD-TYPE | 0 | 3 | 1 | 3 | 2 | 0 | 7 |
P value = 0.0491 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
17P LOSS MUTATED | 10 | 24 |
17P LOSS WILD-TYPE | 9 | 5 |
P value = 0.0019 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
17P LOSS MUTATED | 8 | 3 | 5 | 8 | 4 | 4 | 2 | 0 |
17P LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 2 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
17Q LOSS MUTATED | 17 | 31 | 2 |
17Q LOSS WILD-TYPE | 1 | 4 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
17Q LOSS MUTATED | 19 | 16 | 14 | 1 |
17Q LOSS WILD-TYPE | 0 | 6 | 1 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
17Q LOSS MUTATED | 19 | 11 | 6 | 0 | 10 | 4 | 0 |
17Q LOSS WILD-TYPE | 0 | 5 | 1 | 6 | 0 | 0 | 4 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
17Q LOSS MUTATED | 18 | 8 | 11 | 3 | 3 | 5 | 2 |
17Q LOSS WILD-TYPE | 0 | 3 | 1 | 3 | 2 | 0 | 7 |
P value = 0.0491 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 19 | 29 |
17Q LOSS MUTATED | 10 | 24 |
17Q LOSS WILD-TYPE | 9 | 5 |
P value = 0.00214 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
17Q LOSS MUTATED | 8 | 3 | 5 | 8 | 4 | 4 | 2 | 0 |
17Q LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 2 | 3 | 4 |
P value = 0.0101 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
21Q LOSS MUTATED | 12 | 21 | 2 |
21Q LOSS WILD-TYPE | 6 | 14 | 11 |
P value = 0.0434 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
21Q LOSS MUTATED | 8 | 3 | 1 | 4 | 4 | 2 | 3 | 0 |
21Q LOSS WILD-TYPE | 2 | 3 | 4 | 4 | 0 | 4 | 2 | 4 |
P value = 0.00277 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 35 | 13 |
XP LOSS MUTATED | 13 | 23 | 2 |
XP LOSS WILD-TYPE | 5 | 12 | 11 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
XP LOSS MUTATED | 16 | 8 | 12 | 2 |
XP LOSS WILD-TYPE | 3 | 14 | 3 | 8 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
XP LOSS MUTATED | 16 | 5 | 3 | 2 | 9 | 3 | 0 |
XP LOSS WILD-TYPE | 3 | 11 | 4 | 4 | 1 | 1 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
XP LOSS MUTATED | 18 | 4 | 7 | 2 | 2 | 4 | 1 |
XP LOSS WILD-TYPE | 0 | 7 | 5 | 4 | 3 | 1 | 8 |
P value = 0.0124 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
XP LOSS MUTATED | 8 | 1 | 2 | 6 | 4 | 2 | 3 | 0 |
XP LOSS WILD-TYPE | 2 | 5 | 3 | 2 | 0 | 4 | 2 | 4 |
P value = 0.00674 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 19 | 22 | 15 | 10 |
XQ LOSS MUTATED | 15 | 9 | 12 | 3 |
XQ LOSS WILD-TYPE | 4 | 13 | 3 | 7 |
P value = 0.00358 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
XQ LOSS MUTATED | 15 | 6 | 4 | 2 | 9 | 3 | 0 |
XQ LOSS WILD-TYPE | 4 | 10 | 3 | 4 | 1 | 1 | 4 |
P value = 0.00082 (Fisher's exact test), Q value = 0.0082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
XQ LOSS MUTATED | 17 | 4 | 7 | 2 | 3 | 4 | 2 |
XQ LOSS WILD-TYPE | 1 | 7 | 5 | 4 | 2 | 1 | 7 |
P value = 0.037 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 10 | 6 | 5 | 8 | 4 | 6 | 5 | 4 |
XQ LOSS MUTATED | 8 | 1 | 2 | 6 | 3 | 3 | 4 | 0 |
XQ LOSS WILD-TYPE | 2 | 5 | 3 | 2 | 1 | 3 | 1 | 4 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/20146430/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/20147307/KICH-TP.transferedmergedcluster.txt
-
Number of patients = 66
-
Number of significantly arm-level cnvs = 63
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.