This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 30 focal events and 12 molecular subtypes across 528 patients, 224 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q24.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_1q32.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_3q26.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_4q32.1 cnv correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_5q35.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q36.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_8q24.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_10p14 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_xp22.2 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_xp11.4 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_xq28 cnv correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_1p31.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_1q43 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_3p26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p22.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p14.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_3p12.2 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_3q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_6q26 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_9p21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_14q31.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
del 3p26 3 | 455 (86%) | 73 |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.00019 (0.000556) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0001 (0.000313) |
4e-05 (0.000137) |
0.00276 (0.00641) |
0.0104 (0.0207) |
del 3p22 2 | 465 (88%) | 63 |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
3e-05 (0.000105) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.00665 (0.0139) |
0.0301 (0.0516) |
del 9p21 3 | 159 (30%) | 369 |
0.00105 (0.00272) |
0.0159 (0.029) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.00118 (0.00299) |
0.0124 (0.0241) |
del 9p23 | 152 (29%) | 376 |
0.00406 (0.00908) |
0.0361 (0.0605) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.00268 (0.00626) |
0.124 (0.177) |
amp 8q24 22 | 79 (15%) | 449 |
0.226 (0.292) |
0.106 (0.154) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
2e-05 (7.35e-05) |
1e-05 (3.96e-05) |
0.0249 (0.0436) |
del 1p36 23 | 103 (20%) | 425 |
0.00014 (0.000424) |
0.00081 (0.00216) |
1e-05 (3.96e-05) |
0.0803 (0.123) |
6e-05 (0.000198) |
0.00011 (0.000341) |
0.0001 (0.000313) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0044 (0.00966) |
0.0209 (0.0373) |
0.312 (0.381) |
del 1p31 1 | 77 (15%) | 451 |
0.00187 (0.00446) |
0.00661 (0.0139) |
1e-05 (3.96e-05) |
0.0951 (0.142) |
0.00131 (0.00325) |
3e-05 (0.000105) |
0.0147 (0.0274) |
2e-05 (7.35e-05) |
3e-05 (0.000105) |
0.00249 (0.00586) |
0.00518 (0.0113) |
0.619 (0.683) |
del 6q26 | 151 (29%) | 377 |
0.0144 (0.0273) |
0.0977 (0.144) |
1e-05 (3.96e-05) |
0.0114 (0.0225) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.00116 (0.00296) |
0.00029 (0.000835) |
1e-05 (3.96e-05) |
0.00014 (0.000424) |
0.0298 (0.0513) |
0.132 (0.186) |
del 6q26 | 151 (29%) | 377 |
0.0149 (0.0275) |
0.0974 (0.144) |
1e-05 (3.96e-05) |
0.0124 (0.0241) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.00042 (0.00116) |
0.00019 (0.000556) |
1e-05 (3.96e-05) |
0.00016 (0.00048) |
0.0281 (0.0489) |
0.133 (0.187) |
del 14q31 1 | 228 (43%) | 300 |
5e-05 (0.000168) |
0.00036 (0.00102) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0321 (0.0545) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0901 (0.137) |
0.953 (0.959) |
amp 3q26 32 | 87 (16%) | 441 |
0.0576 (0.0914) |
0.119 (0.172) |
1e-05 (3.96e-05) |
2e-05 (7.35e-05) |
2e-05 (7.35e-05) |
8e-05 (0.000259) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0011 (0.00283) |
0.00546 (0.0118) |
0.128 (0.183) |
del 13q14 2 | 82 (16%) | 446 |
0.0146 (0.0274) |
0.0826 (0.126) |
1e-05 (3.96e-05) |
0.00019 (0.000556) |
1e-05 (3.96e-05) |
0.0006 (0.00164) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0962 (0.143) |
0.153 (0.209) |
amp 7q36 3 | 176 (33%) | 352 |
0.452 (0.52) |
0.859 (0.881) |
1e-05 (3.96e-05) |
0.00557 (0.0119) |
1e-05 (3.96e-05) |
2e-05 (7.35e-05) |
2e-05 (7.35e-05) |
0.00608 (0.0129) |
0.00679 (0.0141) |
0.0142 (0.0271) |
0.147 (0.201) |
0.79 (0.829) |
del 1q43 | 42 (8%) | 486 |
0.0107 (0.0213) |
0.0114 (0.0225) |
6e-05 (0.000198) |
0.354 (0.422) |
0.0237 (0.0418) |
0.00339 (0.00768) |
0.00569 (0.0121) |
1e-05 (3.96e-05) |
0.0996 (0.146) |
0.0168 (0.0305) |
0.289 (0.356) |
0.823 (0.854) |
del 3p14 1 | 373 (71%) | 155 |
0.00334 (0.00761) |
0.0099 (0.0199) |
1e-05 (3.96e-05) |
0.0055 (0.0119) |
0.0903 (0.137) |
0.00686 (0.0142) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
0.0912 (0.137) |
0.00697 (0.0143) |
0.334 (0.405) |
0.882 (0.897) |
del 4q34 3 | 78 (15%) | 450 |
0.237 (0.301) |
0.495 (0.564) |
1e-05 (3.96e-05) |
1e-05 (3.96e-05) |
9e-05 (0.000289) |
0.00305 (0.00699) |
0.00014 (0.000424) |
1e-05 (3.96e-05) |
0.151 (0.206) |
0.00778 (0.0158) |
0.18 (0.238) |
0.0155 (0.0284) |
del 8p23 2 | 154 (29%) | 374 |
0.502 (0.569) |
0.246 (0.309) |
1e-05 (3.96e-05) |
0.04 (0.0661) |
0.0139 (0.0266) |
0.727 (0.788) |
0.00164 (0.00399) |
1e-05 (3.96e-05) |
0.00091 (0.00241) |
0.00096 (0.0025) |
0.141 (0.195) |
0.337 (0.406) |
del 10q23 31 | 96 (18%) | 432 |
0.441 (0.509) |
0.545 (0.608) |
1e-05 (3.96e-05) |
0.00126 (0.00315) |
0.684 (0.748) |
0.0148 (0.0275) |
0.0485 (0.0786) |
0.00032 (0.000914) |
0.0147 (0.0274) |
3e-05 (0.000105) |
0.802 (0.834) |
0.436 (0.505) |
amp 1q32 1 | 62 (12%) | 466 |
0.412 (0.481) |
0.9 (0.912) |
1e-05 (3.96e-05) |
0.0398 (0.066) |
0.166 (0.222) |
0.123 (0.176) |
1e-05 (3.96e-05) |
0.00165 (0.00399) |
1e-05 (3.96e-05) |
0.00059 (0.00162) |
0.276 (0.342) |
0.75 (0.803) |
amp 10p14 | 20 (4%) | 508 |
0.191 (0.249) |
0.777 (0.821) |
8e-05 (0.000259) |
0.181 (0.239) |
0.0155 (0.0284) |
0.0666 (0.104) |
0.00219 (0.00519) |
4e-05 (0.000137) |
0.0314 (0.0536) |
0.0348 (0.0587) |
0.864 (0.884) |
0.368 (0.436) |
amp xp11 4 | 33 (6%) | 495 |
0.844 (0.873) |
0.797 (0.831) |
0.00181 (0.00434) |
0.115 (0.167) |
1e-05 (3.96e-05) |
0.00286 (0.0066) |
0.029 (0.0502) |
0.00025 (0.000726) |
0.0493 (0.0793) |
0.245 (0.309) |
0.794 (0.831) |
1 (1.00) |
del 3p12 2 | 305 (58%) | 223 |
0.0405 (0.0662) |
0.0644 (0.101) |
1e-05 (3.96e-05) |
0.0214 (0.0379) |
0.278 (0.342) |
0.192 (0.249) |
0.00071 (0.00192) |
2e-05 (7.35e-05) |
0.258 (0.322) |
0.0448 (0.0731) |
0.526 (0.589) |
0.738 (0.795) |
amp 1q24 1 | 62 (12%) | 466 |
0.259 (0.322) |
0.787 (0.828) |
1e-05 (3.96e-05) |
0.144 (0.199) |
0.367 (0.436) |
0.398 (0.468) |
1e-05 (3.96e-05) |
0.00409 (0.00909) |
1e-05 (3.96e-05) |
0.00708 (0.0145) |
0.581 (0.645) |
0.925 (0.935) |
amp 5q35 1 | 332 (63%) | 196 |
0.0615 (0.0971) |
0.0493 (0.0793) |
0.00039 (0.00109) |
0.335 (0.405) |
0.0724 (0.112) |
0.00094 (0.00247) |
0.00123 (0.0031) |
1e-05 (3.96e-05) |
0.132 (0.186) |
0.405 (0.475) |
0.62 (0.683) |
0.742 (0.797) |
amp xp22 2 | 31 (6%) | 497 |
1 (1.00) |
0.525 (0.589) |
0.00884 (0.0179) |
0.236 (0.301) |
0.00079 (0.00212) |
0.00405 (0.00908) |
0.055 (0.0876) |
0.00431 (0.00952) |
0.0373 (0.0622) |
0.349 (0.419) |
0.943 (0.951) |
0.881 (0.897) |
del 2q37 3 | 50 (9%) | 478 |
0.00154 (0.0038) |
0.00037 (0.00104) |
0.766 (0.814) |
0.62 (0.683) |
0.416 (0.484) |
0.237 (0.301) |
0.0001 (0.000313) |
3e-05 (0.000105) |
0.0121 (0.0236) |
0.0685 (0.106) |
0.251 (0.314) |
0.136 (0.191) |
amp 4q32 1 | 16 (3%) | 512 |
0.19 (0.248) |
0.778 (0.821) |
0.235 (0.301) |
0.706 (0.768) |
0.352 (0.421) |
0.0239 (0.042) |
0.0197 (0.0352) |
0.0125 (0.0241) |
0.00157 (0.00384) |
0.104 (0.153) |
0.232 (0.298) |
0.498 (0.566) |
del 3q11 2 | 161 (30%) | 367 |
0.185 (0.243) |
0.167 (0.222) |
1e-05 (3.96e-05) |
0.0403 (0.0662) |
0.858 (0.881) |
0.137 (0.192) |
0.515 (0.581) |
5e-05 (0.000168) |
0.537 (0.6) |
0.0638 (0.1) |
0.751 (0.803) |
0.758 (0.807) |
amp xq28 | 37 (7%) | 491 |
0.493 (0.563) |
0.704 (0.767) |
0.164 (0.221) |
0.64 (0.702) |
0.0192 (0.0346) |
0.0921 (0.138) |
0.0788 (0.121) |
0.0349 (0.0587) |
0.108 (0.157) |
0.328 (0.399) |
0.732 (0.791) |
0.485 (0.556) |
amp xq11 2 | 29 (5%) | 499 |
0.172 (0.228) |
0.159 (0.216) |
0.165 (0.222) |
0.257 (0.321) |
0.146 (0.201) |
0.0536 (0.0857) |
0.193 (0.249) |
0.311 (0.381) |
0.14 (0.194) |
0.425 (0.493) |
0.391 (0.462) |
0.854 (0.881) |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 1(1Q24.1) MUTATED | 12 | 3 | 47 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 226 | 132 | 108 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 1(1Q24.1) MUTATED | 3 | 19 | 38 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 108 | 202 | 155 |
P value = 0.00409 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 1(1Q24.1) MUTATED | 7 | 3 | 18 | 25 | 7 | 0 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 110 | 30 | 165 | 107 | 28 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 1(1Q24.1) MUTATED | 4 | 19 | 37 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 120 | 185 | 145 |
P value = 0.00708 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 1(1Q24.1) MUTATED | 15 | 20 | 15 | 10 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 129 | 114 | 180 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 2(1Q32.1) MUTATED | 9 | 3 | 50 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 229 | 132 | 105 |
P value = 0.0398 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
AMP PEAK 2(1Q32.1) MUTATED | 6 | 11 | 12 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 122 | 65 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 2(1Q32.1) MUTATED | 2 | 19 | 39 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 109 | 202 | 154 |
P value = 0.00165 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 2(1Q32.1) MUTATED | 7 | 2 | 18 | 26 | 7 | 0 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 110 | 31 | 165 | 106 | 28 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 2(1Q32.1) MUTATED | 4 | 18 | 38 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 120 | 186 | 144 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 2(1Q32.1) MUTATED | 12 | 20 | 16 | 12 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 132 | 114 | 179 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 19 | 54 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 224 | 116 | 101 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
AMP PEAK 3(3Q26.32) MUTATED | 7 | 14 | 30 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 121 | 62 | 80 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 3(3Q26.32) MUTATED | 19 | 9 | 32 | 10 | 10 | 1 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 69 | 77 | 58 | 72 | 82 | 32 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 3(3Q26.32) MUTATED | 13 | 23 | 29 | 16 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 122 | 89 | 56 | 123 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 18 | 55 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 97 | 203 | 138 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 4 | 14 | 43 | 8 | 4 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 103 | 29 | 169 | 89 | 27 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 3(3Q26.32) MUTATED | 13 | 16 | 55 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 111 | 188 | 127 |
P value = 0.0011 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 3(3Q26.32) MUTATED | 29 | 32 | 17 | 6 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 115 | 102 | 178 | 31 |
P value = 0.00546 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
AMP PEAK 3(3Q26.32) MUTATED | 3 | 1 | 3 | 11 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 35 | 20 | 45 | 24 |
P value = 0.0239 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 4(4Q32.1) MUTATED | 3 | 3 | 5 | 0 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 132 | 109 | 80 | 139 |
P value = 0.0197 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 4(4Q32.1) MUTATED | 7 | 2 | 6 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 104 | 219 | 187 |
P value = 0.0125 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 4(4Q32.1) MUTATED | 4 | 0 | 2 | 5 | 0 | 4 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 113 | 33 | 181 | 127 | 35 | 21 |
P value = 0.00157 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 4(4Q32.1) MUTATED | 3 | 1 | 12 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 121 | 203 | 170 |
P value = 0.0493 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
AMP PEAK 5(5Q35.1) MUTATED | 8 | 5 | 0 | 9 | 7 | 5 | 3 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 3 | 7 | 4 | 2 | 6 | 4 | 7 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 5(5Q35.1) MUTATED | 162 | 65 | 105 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 76 | 70 | 50 |
P value = 0.00094 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 5(5Q35.1) MUTATED | 84 | 68 | 43 | 106 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 51 | 44 | 42 | 33 |
P value = 0.00123 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 5(5Q35.1) MUTATED | 53 | 149 | 128 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 58 | 72 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 5(5Q35.1) MUTATED | 79 | 15 | 121 | 84 | 26 | 5 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 38 | 18 | 62 | 48 | 9 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 6(7Q36.3) MUTATED | 39 | 48 | 89 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 199 | 87 | 66 |
P value = 0.00557 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
AMP PEAK 6(7Q36.3) MUTATED | 32 | 16 | 45 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 96 | 60 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 6(7Q36.3) MUTATED | 31 | 22 | 51 | 23 | 24 | 6 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 57 | 64 | 39 | 59 | 68 | 27 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 6(7Q36.3) MUTATED | 35 | 52 | 40 | 30 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 100 | 60 | 45 | 109 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 6(7Q36.3) MUTATED | 33 | 53 | 88 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 78 | 168 | 105 |
P value = 0.00608 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 6(7Q36.3) MUTATED | 39 | 11 | 45 | 60 | 13 | 6 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 78 | 22 | 138 | 72 | 22 | 19 |
P value = 0.00679 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 6(7Q36.3) MUTATED | 37 | 58 | 78 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 87 | 146 | 104 |
P value = 0.0142 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 6(7Q36.3) MUTATED | 48 | 57 | 52 | 16 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 96 | 77 | 143 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 7(8Q24.22) MUTATED | 6 | 17 | 56 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 232 | 118 | 99 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
AMP PEAK 7(8Q24.22) MUTATED | 6 | 14 | 33 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 122 | 62 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 7(8Q24.22) MUTATED | 13 | 5 | 36 | 7 | 12 | 1 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 75 | 81 | 54 | 75 | 80 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 7(8Q24.22) MUTATED | 9 | 31 | 25 | 9 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 126 | 81 | 60 | 130 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 7(8Q24.22) MUTATED | 8 | 9 | 61 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 103 | 212 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 7(8Q24.22) MUTATED | 9 | 2 | 8 | 54 | 4 | 1 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 108 | 31 | 175 | 78 | 31 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 7(8Q24.22) MUTATED | 13 | 11 | 53 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 111 | 193 | 129 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 7(8Q24.22) MUTATED | 29 | 24 | 11 | 13 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 115 | 110 | 184 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
AMP PEAK 7(8Q24.22) MUTATED | 3 | 1 | 1 | 14 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 35 | 20 | 47 | 21 |
P value = 0.0249 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 56 | 47 |
AMP PEAK 7(8Q24.22) MUTATED | 3 | 13 | 3 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 36 | 43 | 44 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 8(10P14) MUTATED | 1 | 5 | 14 |
AMP PEAK 8(10P14) WILD-TYPE | 237 | 130 | 141 |
P value = 0.0155 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 8(10P14) MUTATED | 1 | 2 | 10 | 2 | 2 | 2 |
AMP PEAK 8(10P14) WILD-TYPE | 87 | 84 | 80 | 80 | 90 | 31 |
P value = 0.00219 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 8(10P14) MUTATED | 4 | 2 | 14 |
AMP PEAK 8(10P14) WILD-TYPE | 107 | 219 | 179 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 8(10P14) MUTATED | 2 | 2 | 0 | 14 | 2 | 0 |
AMP PEAK 8(10P14) WILD-TYPE | 115 | 31 | 183 | 118 | 33 | 25 |
P value = 0.0314 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 8(10P14) MUTATED | 5 | 3 | 12 |
AMP PEAK 8(10P14) WILD-TYPE | 119 | 201 | 170 |
P value = 0.0348 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 8(10P14) MUTATED | 7 | 6 | 3 | 4 |
AMP PEAK 8(10P14) WILD-TYPE | 137 | 128 | 192 | 33 |
P value = 0.00884 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 9(XP22.2) MUTATED | 8 | 6 | 17 |
AMP PEAK 9(XP22.2) WILD-TYPE | 230 | 129 | 138 |
P value = 0.00079 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 9(XP22.2) MUTATED | 10 | 0 | 10 | 3 | 2 | 1 |
AMP PEAK 9(XP22.2) WILD-TYPE | 78 | 86 | 80 | 79 | 90 | 32 |
P value = 0.00405 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 9(XP22.2) MUTATED | 4 | 6 | 12 | 4 |
AMP PEAK 9(XP22.2) WILD-TYPE | 131 | 106 | 73 | 135 |
P value = 0.00431 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 9(XP22.2) MUTATED | 3 | 4 | 6 | 16 | 2 | 0 |
AMP PEAK 9(XP22.2) WILD-TYPE | 114 | 29 | 177 | 116 | 33 | 25 |
P value = 0.0373 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 9(XP22.2) MUTATED | 5 | 8 | 18 |
AMP PEAK 9(XP22.2) WILD-TYPE | 119 | 196 | 164 |
P value = 0.00181 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 10(XP11.4) MUTATED | 8 | 6 | 19 |
AMP PEAK 10(XP11.4) WILD-TYPE | 230 | 129 | 136 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 10(XP11.4) MUTATED | 12 | 0 | 11 | 2 | 2 | 0 |
AMP PEAK 10(XP11.4) WILD-TYPE | 76 | 86 | 79 | 80 | 90 | 33 |
P value = 0.00286 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 10(XP11.4) MUTATED | 5 | 7 | 12 | 3 |
AMP PEAK 10(XP11.4) WILD-TYPE | 130 | 105 | 73 | 136 |
P value = 0.029 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
AMP PEAK 10(XP11.4) MUTATED | 9 | 7 | 17 |
AMP PEAK 10(XP11.4) WILD-TYPE | 102 | 214 | 176 |
P value = 0.00025 (Fisher's exact test), Q value = 0.00073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 10(XP11.4) MUTATED | 2 | 4 | 7 | 19 | 1 | 0 |
AMP PEAK 10(XP11.4) WILD-TYPE | 115 | 29 | 176 | 113 | 34 | 25 |
P value = 0.0493 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 10(XP11.4) MUTATED | 6 | 8 | 18 |
AMP PEAK 10(XP11.4) WILD-TYPE | 118 | 196 | 164 |
P value = 0.0192 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 12(XQ28) MUTATED | 8 | 1 | 11 | 8 | 6 | 0 |
AMP PEAK 12(XQ28) WILD-TYPE | 80 | 85 | 79 | 74 | 86 | 33 |
P value = 0.0349 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 12(XQ28) MUTATED | 5 | 2 | 9 | 14 | 6 | 0 |
AMP PEAK 12(XQ28) WILD-TYPE | 112 | 31 | 174 | 118 | 29 | 25 |
P value = 0.00014 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 1(1P36.23) MUTATED | 2 | 8 | 8 |
DEL PEAK 1(1P36.23) WILD-TYPE | 31 | 16 | 5 |
P value = 0.00081 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 1(1P36.23) MUTATED | 0 | 2 | 2 | 5 | 1 | 1 | 7 |
DEL PEAK 1(1P36.23) WILD-TYPE | 11 | 10 | 2 | 6 | 12 | 8 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 1(1P36.23) MUTATED | 13 | 37 | 53 |
DEL PEAK 1(1P36.23) WILD-TYPE | 225 | 98 | 102 |
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 1(1P36.23) MUTATED | 25 | 6 | 29 | 16 | 10 | 5 |
DEL PEAK 1(1P36.23) WILD-TYPE | 63 | 80 | 61 | 66 | 82 | 28 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 1(1P36.23) MUTATED | 15 | 30 | 27 | 19 |
DEL PEAK 1(1P36.23) WILD-TYPE | 120 | 82 | 58 | 120 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 1(1P36.23) MUTATED | 21 | 26 | 56 |
DEL PEAK 1(1P36.23) WILD-TYPE | 90 | 195 | 137 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 1(1P36.23) MUTATED | 11 | 6 | 23 | 41 | 10 | 12 |
DEL PEAK 1(1P36.23) WILD-TYPE | 106 | 27 | 160 | 91 | 25 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 1(1P36.23) MUTATED | 19 | 23 | 61 |
DEL PEAK 1(1P36.23) WILD-TYPE | 105 | 181 | 121 |
P value = 0.0044 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 1(1P36.23) MUTATED | 32 | 34 | 25 | 12 |
DEL PEAK 1(1P36.23) WILD-TYPE | 112 | 100 | 170 | 25 |
P value = 0.0209 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 1(1P36.23) MUTATED | 8 | 3 | 3 | 11 |
DEL PEAK 1(1P36.23) WILD-TYPE | 30 | 18 | 45 | 24 |
P value = 0.00187 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 2(1P31.1) MUTATED | 2 | 5 | 7 |
DEL PEAK 2(1P31.1) WILD-TYPE | 31 | 19 | 6 |
P value = 0.00661 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 2(1P31.1) MUTATED | 0 | 3 | 2 | 1 | 1 | 1 | 6 |
DEL PEAK 2(1P31.1) WILD-TYPE | 11 | 9 | 2 | 10 | 12 | 8 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 2(1P31.1) MUTATED | 8 | 29 | 40 |
DEL PEAK 2(1P31.1) WILD-TYPE | 230 | 106 | 115 |
P value = 0.00131 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 2(1P31.1) MUTATED | 20 | 7 | 21 | 11 | 5 | 4 |
DEL PEAK 2(1P31.1) WILD-TYPE | 68 | 79 | 69 | 71 | 87 | 29 |
P value = 3e-05 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 2(1P31.1) MUTATED | 6 | 23 | 21 | 18 |
DEL PEAK 2(1P31.1) WILD-TYPE | 129 | 89 | 64 | 121 |
P value = 0.0147 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 2(1P31.1) MUTATED | 20 | 21 | 36 |
DEL PEAK 2(1P31.1) WILD-TYPE | 91 | 200 | 157 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 2(1P31.1) MUTATED | 11 | 6 | 16 | 28 | 4 | 12 |
DEL PEAK 2(1P31.1) WILD-TYPE | 106 | 27 | 167 | 104 | 31 | 13 |
P value = 3e-05 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 2(1P31.1) MUTATED | 10 | 20 | 47 |
DEL PEAK 2(1P31.1) WILD-TYPE | 114 | 184 | 135 |
P value = 0.00249 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 2(1P31.1) MUTATED | 17 | 33 | 20 | 7 |
DEL PEAK 2(1P31.1) WILD-TYPE | 127 | 101 | 175 | 30 |
P value = 0.00518 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 2(1P31.1) MUTATED | 6 | 0 | 2 | 9 |
DEL PEAK 2(1P31.1) WILD-TYPE | 32 | 21 | 46 | 26 |
P value = 0.0107 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 3(1Q43) MUTATED | 2 | 1 | 5 |
DEL PEAK 3(1Q43) WILD-TYPE | 31 | 23 | 8 |
P value = 0.0114 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 3(1Q43) MUTATED | 0 | 1 | 0 | 0 | 1 | 1 | 5 |
DEL PEAK 3(1Q43) WILD-TYPE | 11 | 11 | 4 | 11 | 12 | 8 | 5 |
P value = 6e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 3(1Q43) MUTATED | 7 | 22 | 13 |
DEL PEAK 3(1Q43) WILD-TYPE | 231 | 113 | 142 |
P value = 0.0237 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 3(1Q43) MUTATED | 13 | 8 | 8 | 3 | 2 | 2 |
DEL PEAK 3(1Q43) WILD-TYPE | 75 | 78 | 82 | 79 | 90 | 31 |
P value = 0.00339 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 3(1Q43) MUTATED | 4 | 10 | 14 | 8 |
DEL PEAK 3(1Q43) WILD-TYPE | 131 | 102 | 71 | 131 |
P value = 0.00569 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 3(1Q43) MUTATED | 17 | 16 | 9 |
DEL PEAK 3(1Q43) WILD-TYPE | 94 | 205 | 184 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 3(1Q43) MUTATED | 6 | 1 | 13 | 9 | 2 | 11 |
DEL PEAK 3(1Q43) WILD-TYPE | 111 | 32 | 170 | 123 | 33 | 14 |
P value = 0.0168 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 3(1Q43) MUTATED | 10 | 19 | 13 | 0 |
DEL PEAK 3(1Q43) WILD-TYPE | 134 | 115 | 182 | 37 |
P value = 0.00154 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 4(2Q37.3) MUTATED | 1 | 4 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 32 | 20 | 7 |
P value = 0.00037 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 4 | 0 | 0 | 1 | 0 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 11 | 8 | 4 | 11 | 12 | 9 | 4 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 4(2Q37.3) MUTATED | 21 | 9 | 19 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 90 | 212 | 174 |
P value = 3e-05 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 4(2Q37.3) MUTATED | 13 | 1 | 7 | 18 | 1 | 9 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 104 | 32 | 176 | 114 | 34 | 16 |
P value = 0.0121 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 4(2Q37.3) MUTATED | 11 | 11 | 26 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 113 | 193 | 156 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 5(3P26.3) MUTATED | 32 | 22 | 3 |
DEL PEAK 5(3P26.3) WILD-TYPE | 1 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 5(3P26.3) MUTATED | 11 | 11 | 1 | 11 | 12 | 9 | 2 |
DEL PEAK 5(3P26.3) WILD-TYPE | 0 | 1 | 3 | 0 | 1 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 5(3P26.3) MUTATED | 236 | 69 | 150 |
DEL PEAK 5(3P26.3) WILD-TYPE | 2 | 66 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 5(3P26.3) MUTATED | 118 | 50 | 103 |
DEL PEAK 5(3P26.3) WILD-TYPE | 10 | 26 | 7 |
P value = 0.00019 (Fisher's exact test), Q value = 0.00056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 5(3P26.3) MUTATED | 64 | 83 | 80 | 75 | 77 | 30 |
DEL PEAK 5(3P26.3) WILD-TYPE | 24 | 3 | 10 | 7 | 15 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 5(3P26.3) MUTATED | 111 | 104 | 62 | 132 |
DEL PEAK 5(3P26.3) WILD-TYPE | 24 | 8 | 23 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 5(3P26.3) MUTATED | 70 | 211 | 171 |
DEL PEAK 5(3P26.3) WILD-TYPE | 41 | 10 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 5(3P26.3) MUTATED | 108 | 20 | 175 | 114 | 33 | 2 |
DEL PEAK 5(3P26.3) WILD-TYPE | 9 | 13 | 8 | 18 | 2 | 23 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 5(3P26.3) MUTATED | 103 | 191 | 144 |
DEL PEAK 5(3P26.3) WILD-TYPE | 21 | 13 | 38 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 5(3P26.3) MUTATED | 112 | 108 | 184 | 34 |
DEL PEAK 5(3P26.3) WILD-TYPE | 32 | 26 | 11 | 3 |
P value = 0.00276 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 5(3P26.3) MUTATED | 27 | 14 | 46 | 28 |
DEL PEAK 5(3P26.3) WILD-TYPE | 11 | 7 | 2 | 7 |
P value = 0.0104 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 56 | 47 |
DEL PEAK 5(3P26.3) MUTATED | 27 | 44 | 44 |
DEL PEAK 5(3P26.3) WILD-TYPE | 12 | 12 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 6(3P22.2) MUTATED | 32 | 22 | 3 |
DEL PEAK 6(3P22.2) WILD-TYPE | 1 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 6(3P22.2) MUTATED | 11 | 11 | 1 | 11 | 12 | 9 | 2 |
DEL PEAK 6(3P22.2) WILD-TYPE | 0 | 1 | 3 | 0 | 1 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 6(3P22.2) MUTATED | 238 | 75 | 152 |
DEL PEAK 6(3P22.2) WILD-TYPE | 0 | 60 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 6(3P22.2) MUTATED | 119 | 52 | 106 |
DEL PEAK 6(3P22.2) WILD-TYPE | 9 | 24 | 4 |
P value = 3e-05 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 6(3P22.2) MUTATED | 66 | 85 | 84 | 76 | 78 | 30 |
DEL PEAK 6(3P22.2) WILD-TYPE | 22 | 1 | 6 | 6 | 14 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 6(3P22.2) MUTATED | 114 | 107 | 65 | 133 |
DEL PEAK 6(3P22.2) WILD-TYPE | 21 | 5 | 20 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 6(3P22.2) MUTATED | 70 | 216 | 176 |
DEL PEAK 6(3P22.2) WILD-TYPE | 41 | 5 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 6(3P22.2) MUTATED | 110 | 19 | 179 | 116 | 35 | 3 |
DEL PEAK 6(3P22.2) WILD-TYPE | 7 | 14 | 4 | 16 | 0 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 6(3P22.2) MUTATED | 103 | 197 | 148 |
DEL PEAK 6(3P22.2) WILD-TYPE | 21 | 7 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 6(3P22.2) MUTATED | 114 | 111 | 187 | 36 |
DEL PEAK 6(3P22.2) WILD-TYPE | 30 | 23 | 8 | 1 |
P value = 0.00665 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 6(3P22.2) MUTATED | 29 | 14 | 46 | 28 |
DEL PEAK 6(3P22.2) WILD-TYPE | 9 | 7 | 2 | 7 |
P value = 0.0301 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 56 | 47 |
DEL PEAK 6(3P22.2) MUTATED | 29 | 44 | 44 |
DEL PEAK 6(3P22.2) WILD-TYPE | 10 | 12 | 3 |
P value = 0.00334 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 7(3P14.1) MUTATED | 22 | 19 | 3 |
DEL PEAK 7(3P14.1) WILD-TYPE | 11 | 5 | 10 |
P value = 0.0099 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 7(3P14.1) MUTATED | 8 | 9 | 1 | 10 | 7 | 7 | 2 |
DEL PEAK 7(3P14.1) WILD-TYPE | 3 | 3 | 3 | 1 | 6 | 2 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 7(3P14.1) MUTATED | 199 | 32 | 142 |
DEL PEAK 7(3P14.1) WILD-TYPE | 39 | 103 | 13 |
P value = 0.0055 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 7(3P14.1) MUTATED | 98 | 44 | 86 |
DEL PEAK 7(3P14.1) WILD-TYPE | 30 | 32 | 24 |
P value = 0.00686 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 7(3P14.1) MUTATED | 92 | 89 | 49 | 103 |
DEL PEAK 7(3P14.1) WILD-TYPE | 43 | 23 | 36 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 7(3P14.1) MUTATED | 49 | 175 | 147 |
DEL PEAK 7(3P14.1) WILD-TYPE | 62 | 46 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 7(3P14.1) MUTATED | 90 | 14 | 140 | 100 | 25 | 2 |
DEL PEAK 7(3P14.1) WILD-TYPE | 27 | 19 | 43 | 32 | 10 | 23 |
P value = 0.00697 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 7(3P14.1) MUTATED | 89 | 91 | 149 | 31 |
DEL PEAK 7(3P14.1) WILD-TYPE | 55 | 43 | 46 | 6 |
P value = 0.0405 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 8(3P12.2) MUTATED | 18 | 13 | 2 |
DEL PEAK 8(3P12.2) WILD-TYPE | 15 | 11 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 8(3P12.2) MUTATED | 160 | 22 | 123 |
DEL PEAK 8(3P12.2) WILD-TYPE | 78 | 113 | 32 |
P value = 0.0214 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 8(3P12.2) MUTATED | 82 | 35 | 71 |
DEL PEAK 8(3P12.2) WILD-TYPE | 46 | 41 | 39 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 8(3P12.2) MUTATED | 47 | 134 | 123 |
DEL PEAK 8(3P12.2) WILD-TYPE | 64 | 87 | 70 |
P value = 2e-05 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 8(3P12.2) MUTATED | 75 | 13 | 109 | 84 | 21 | 2 |
DEL PEAK 8(3P12.2) WILD-TYPE | 42 | 20 | 74 | 48 | 14 | 23 |
P value = 0.0448 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 8(3P12.2) MUTATED | 70 | 80 | 118 | 26 |
DEL PEAK 8(3P12.2) WILD-TYPE | 74 | 54 | 77 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 9(3Q11.2) MUTATED | 83 | 13 | 65 |
DEL PEAK 9(3Q11.2) WILD-TYPE | 155 | 122 | 90 |
P value = 0.0403 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 9(3Q11.2) MUTATED | 45 | 15 | 38 |
DEL PEAK 9(3Q11.2) WILD-TYPE | 83 | 61 | 72 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 9(3Q11.2) MUTATED | 49 | 6 | 50 | 50 | 5 | 1 |
DEL PEAK 9(3Q11.2) WILD-TYPE | 68 | 27 | 133 | 82 | 30 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 10(4Q34.3) MUTATED | 10 | 17 | 51 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 228 | 118 | 104 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 10(4Q34.3) MUTATED | 10 | 9 | 34 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 118 | 67 | 76 |
P value = 9e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 10(4Q34.3) MUTATED | 8 | 11 | 30 | 11 | 13 | 1 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 80 | 75 | 60 | 71 | 79 | 32 |
P value = 0.00305 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 10(4Q34.3) MUTATED | 12 | 25 | 20 | 17 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 123 | 87 | 65 | 122 |
P value = 0.00014 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 10(4Q34.3) MUTATED | 8 | 25 | 45 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 103 | 196 | 148 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 10(4Q34.3) MUTATED | 15 | 1 | 18 | 38 | 6 | 0 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 102 | 32 | 165 | 94 | 29 | 25 |
P value = 0.00778 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 10(4Q34.3) MUTATED | 23 | 15 | 26 | 13 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 121 | 119 | 169 | 24 |
P value = 0.0155 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 56 | 47 |
DEL PEAK 10(4Q34.3) MUTATED | 3 | 15 | 4 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 36 | 41 | 43 |
P value = 0.0144 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 11(6Q26) MUTATED | 7 | 12 | 8 |
DEL PEAK 11(6Q26) WILD-TYPE | 26 | 12 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 11(6Q26) MUTATED | 37 | 26 | 88 |
DEL PEAK 11(6Q26) WILD-TYPE | 201 | 109 | 67 |
P value = 0.0114 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 11(6Q26) MUTATED | 27 | 14 | 39 |
DEL PEAK 11(6Q26) WILD-TYPE | 101 | 62 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 11(6Q26) MUTATED | 23 | 27 | 41 | 29 | 9 | 6 |
DEL PEAK 11(6Q26) WILD-TYPE | 65 | 59 | 49 | 53 | 83 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 11(6Q26) MUTATED | 17 | 48 | 34 | 36 |
DEL PEAK 11(6Q26) WILD-TYPE | 118 | 64 | 51 | 103 |
P value = 0.00116 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 11(6Q26) MUTATED | 22 | 54 | 73 |
DEL PEAK 11(6Q26) WILD-TYPE | 89 | 167 | 120 |
P value = 0.00029 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 11(6Q26) MUTATED | 26 | 6 | 40 | 58 | 10 | 9 |
DEL PEAK 11(6Q26) WILD-TYPE | 91 | 27 | 143 | 74 | 25 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 11(6Q26) MUTATED | 25 | 43 | 79 |
DEL PEAK 11(6Q26) WILD-TYPE | 99 | 161 | 103 |
P value = 0.00014 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 11(6Q26) MUTATED | 38 | 50 | 40 | 19 |
DEL PEAK 11(6Q26) WILD-TYPE | 106 | 84 | 155 | 18 |
P value = 0.0298 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 11(6Q26) MUTATED | 7 | 2 | 12 | 15 |
DEL PEAK 11(6Q26) WILD-TYPE | 31 | 19 | 36 | 20 |
P value = 0.0149 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 12(6Q26) MUTATED | 7 | 12 | 8 |
DEL PEAK 12(6Q26) WILD-TYPE | 26 | 12 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 12(6Q26) MUTATED | 37 | 26 | 88 |
DEL PEAK 12(6Q26) WILD-TYPE | 201 | 109 | 67 |
P value = 0.0124 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 12(6Q26) MUTATED | 27 | 14 | 39 |
DEL PEAK 12(6Q26) WILD-TYPE | 101 | 62 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 12(6Q26) MUTATED | 23 | 26 | 42 | 29 | 9 | 6 |
DEL PEAK 12(6Q26) WILD-TYPE | 65 | 60 | 48 | 53 | 83 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 12(6Q26) MUTATED | 17 | 49 | 33 | 36 |
DEL PEAK 12(6Q26) WILD-TYPE | 118 | 63 | 52 | 103 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 12(6Q26) MUTATED | 21 | 54 | 74 |
DEL PEAK 12(6Q26) WILD-TYPE | 90 | 167 | 119 |
P value = 0.00019 (Fisher's exact test), Q value = 0.00056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 12(6Q26) MUTATED | 26 | 6 | 40 | 59 | 9 | 9 |
DEL PEAK 12(6Q26) WILD-TYPE | 91 | 27 | 143 | 73 | 26 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 12(6Q26) MUTATED | 24 | 43 | 80 |
DEL PEAK 12(6Q26) WILD-TYPE | 100 | 161 | 102 |
P value = 0.00016 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 12(6Q26) MUTATED | 38 | 50 | 40 | 19 |
DEL PEAK 12(6Q26) WILD-TYPE | 106 | 84 | 155 | 18 |
P value = 0.0281 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 12(6Q26) MUTATED | 7 | 2 | 12 | 15 |
DEL PEAK 12(6Q26) WILD-TYPE | 31 | 19 | 36 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 13(8P23.2) MUTATED | 43 | 37 | 74 |
DEL PEAK 13(8P23.2) WILD-TYPE | 195 | 98 | 81 |
P value = 0.04 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 13(8P23.2) MUTATED | 28 | 19 | 40 |
DEL PEAK 13(8P23.2) WILD-TYPE | 100 | 57 | 70 |
P value = 0.0139 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 13(8P23.2) MUTATED | 24 | 15 | 38 | 27 | 26 | 8 |
DEL PEAK 13(8P23.2) WILD-TYPE | 64 | 71 | 52 | 55 | 66 | 25 |
P value = 0.00164 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 13(8P23.2) MUTATED | 23 | 56 | 74 |
DEL PEAK 13(8P23.2) WILD-TYPE | 88 | 165 | 119 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 13(8P23.2) MUTATED | 31 | 3 | 48 | 60 | 6 | 5 |
DEL PEAK 13(8P23.2) WILD-TYPE | 86 | 30 | 135 | 72 | 29 | 20 |
P value = 0.00091 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 13(8P23.2) MUTATED | 36 | 44 | 71 |
DEL PEAK 13(8P23.2) WILD-TYPE | 88 | 160 | 111 |
P value = 0.00096 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 13(8P23.2) MUTATED | 51 | 39 | 42 | 19 |
DEL PEAK 13(8P23.2) WILD-TYPE | 93 | 95 | 153 | 18 |
P value = 0.00406 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 14(9P23) MUTATED | 5 | 12 | 1 |
DEL PEAK 14(9P23) WILD-TYPE | 28 | 12 | 12 |
P value = 0.0361 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 14(9P23) MUTATED | 2 | 7 | 0 | 5 | 1 | 2 | 1 |
DEL PEAK 14(9P23) WILD-TYPE | 9 | 5 | 4 | 6 | 12 | 7 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 14(9P23) MUTATED | 9 | 34 | 109 |
DEL PEAK 14(9P23) WILD-TYPE | 229 | 101 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 14(9P23) MUTATED | 6 | 21 | 68 |
DEL PEAK 14(9P23) WILD-TYPE | 122 | 55 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 14(9P23) MUTATED | 16 | 14 | 56 | 24 | 25 | 6 |
DEL PEAK 14(9P23) WILD-TYPE | 72 | 72 | 34 | 58 | 67 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 14(9P23) MUTATED | 25 | 55 | 37 | 24 |
DEL PEAK 14(9P23) WILD-TYPE | 110 | 57 | 48 | 115 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 14(9P23) MUTATED | 16 | 25 | 110 |
DEL PEAK 14(9P23) WILD-TYPE | 95 | 196 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 14(9P23) MUTATED | 32 | 3 | 15 | 84 | 13 | 4 |
DEL PEAK 14(9P23) WILD-TYPE | 85 | 30 | 168 | 48 | 22 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 14(9P23) MUTATED | 26 | 25 | 96 |
DEL PEAK 14(9P23) WILD-TYPE | 98 | 179 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 14(9P23) MUTATED | 44 | 56 | 23 | 24 |
DEL PEAK 14(9P23) WILD-TYPE | 100 | 78 | 172 | 13 |
P value = 0.00268 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 14(9P23) MUTATED | 8 | 4 | 5 | 16 |
DEL PEAK 14(9P23) WILD-TYPE | 30 | 17 | 43 | 19 |
P value = 0.00105 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 15(9P21.3) MUTATED | 5 | 13 | 1 |
DEL PEAK 15(9P21.3) WILD-TYPE | 28 | 11 | 12 |
P value = 0.0159 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 15(9P21.3) MUTATED | 2 | 7 | 0 | 6 | 1 | 2 | 1 |
DEL PEAK 15(9P21.3) WILD-TYPE | 9 | 5 | 4 | 5 | 12 | 7 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 15(9P21.3) MUTATED | 12 | 35 | 112 |
DEL PEAK 15(9P21.3) WILD-TYPE | 226 | 100 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 15(9P21.3) MUTATED | 6 | 24 | 68 |
DEL PEAK 15(9P21.3) WILD-TYPE | 122 | 52 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 15(9P21.3) MUTATED | 17 | 15 | 59 | 23 | 27 | 6 |
DEL PEAK 15(9P21.3) WILD-TYPE | 71 | 71 | 31 | 59 | 65 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 15(9P21.3) MUTATED | 28 | 53 | 41 | 25 |
DEL PEAK 15(9P21.3) WILD-TYPE | 107 | 59 | 44 | 114 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 15(9P21.3) MUTATED | 18 | 27 | 113 |
DEL PEAK 15(9P21.3) WILD-TYPE | 93 | 194 | 80 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 15(9P21.3) MUTATED | 32 | 2 | 16 | 90 | 14 | 4 |
DEL PEAK 15(9P21.3) WILD-TYPE | 85 | 31 | 167 | 42 | 21 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 15(9P21.3) MUTATED | 29 | 26 | 98 |
DEL PEAK 15(9P21.3) WILD-TYPE | 95 | 178 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 15(9P21.3) MUTATED | 48 | 55 | 24 | 26 |
DEL PEAK 15(9P21.3) WILD-TYPE | 96 | 79 | 171 | 11 |
P value = 0.00118 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
DEL PEAK 15(9P21.3) MUTATED | 8 | 5 | 5 | 17 |
DEL PEAK 15(9P21.3) WILD-TYPE | 30 | 16 | 43 | 18 |
P value = 0.0124 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 56 | 47 |
DEL PEAK 15(9P21.3) MUTATED | 8 | 21 | 6 |
DEL PEAK 15(9P21.3) WILD-TYPE | 31 | 35 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 16(10Q23.31) MUTATED | 17 | 29 | 50 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 221 | 106 | 105 |
P value = 0.00126 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 16(10Q23.31) MUTATED | 17 | 9 | 33 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 111 | 67 | 77 |
P value = 0.0148 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 16(10Q23.31) MUTATED | 15 | 26 | 22 | 22 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 120 | 86 | 63 | 117 |
P value = 0.0485 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 16(10Q23.31) MUTATED | 21 | 30 | 44 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 90 | 191 | 149 |
P value = 0.00032 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 16(10Q23.31) MUTATED | 22 | 3 | 21 | 37 | 3 | 9 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 95 | 30 | 162 | 95 | 32 | 16 |
P value = 0.0147 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 16(10Q23.31) MUTATED | 22 | 27 | 45 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 102 | 177 | 137 |
P value = 3e-05 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 16(10Q23.31) MUTATED | 21 | 35 | 23 | 15 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 123 | 99 | 172 | 22 |
P value = 0.0146 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 17(13Q14.2) MUTATED | 1 | 7 | 3 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 32 | 17 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 17(13Q14.2) MUTATED | 11 | 23 | 48 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 227 | 112 | 107 |
P value = 0.00019 (Fisher's exact test), Q value = 0.00056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 17(13Q14.2) MUTATED | 8 | 16 | 27 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 120 | 60 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 17(13Q14.2) MUTATED | 12 | 3 | 34 | 10 | 11 | 3 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 76 | 83 | 56 | 72 | 81 | 30 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 17(13Q14.2) MUTATED | 12 | 23 | 23 | 15 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 123 | 89 | 62 | 124 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 17(13Q14.2) MUTATED | 13 | 19 | 50 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 98 | 202 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 17(13Q14.2) MUTATED | 7 | 2 | 15 | 43 | 8 | 7 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 110 | 31 | 168 | 89 | 27 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 17(13Q14.2) MUTATED | 14 | 16 | 50 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 110 | 188 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 17(13Q14.2) MUTATED | 20 | 33 | 14 | 13 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 124 | 101 | 181 | 24 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 18(14Q31.1) MUTATED | 10 | 19 | 2 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 23 | 5 | 11 |
P value = 0.00036 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 18(14Q31.1) MUTATED | 4 | 7 | 1 | 11 | 5 | 1 | 2 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 7 | 5 | 3 | 0 | 8 | 8 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 18(14Q31.1) MUTATED | 70 | 47 | 111 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 168 | 88 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 18(14Q31.1) MUTATED | 32 | 36 | 65 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 96 | 40 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 18(14Q31.1) MUTATED | 30 | 23 | 58 | 57 | 33 | 7 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 58 | 63 | 32 | 25 | 59 | 26 |
P value = 0.0321 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 18(14Q31.1) MUTATED | 49 | 56 | 46 | 57 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 86 | 56 | 39 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 111 | 221 | 193 |
DEL PEAK 18(14Q31.1) MUTATED | 21 | 73 | 131 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 90 | 148 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 18(14Q31.1) MUTATED | 45 | 7 | 57 | 81 | 33 | 2 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 72 | 26 | 126 | 51 | 2 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 18(14Q31.1) MUTATED | 38 | 66 | 118 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 86 | 138 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 18(14Q31.1) MUTATED | 52 | 84 | 62 | 24 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 92 | 50 | 133 | 13 |
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/20146402/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/20125734/KIRC-TP.transferedmergedcluster.txt
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Number of patients = 528
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Number of significantly focal cnvs = 30
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.