This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 8 molecular subtypes across 370 patients, 257 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2p gain cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.
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2q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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3p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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3q gain cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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4p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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6q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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7p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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7q gain cnv correlated to 'METHLYATION_CNMF'.
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8p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p gain cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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13q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'MRNASEQ_CNMF'.
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16q gain cnv correlated to 'MRNASEQ_CNMF'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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18q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19p gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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22q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xp gain cnv correlated to 'CN_CNMF'.
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xq gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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2q loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p loss cnv correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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20q loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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21q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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22q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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xp loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xq loss cnv correlated to 'CN_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
1p loss | 81 (22%) | 289 |
0.00287 (0.0164) |
1e-05 (0.000205) |
1e-05 (0.000205) |
1e-05 (0.000205) |
0.00399 (0.02) |
0.0073 (0.0307) |
0.00056 (0.0049) |
0.00436 (0.0209) |
13q loss | 122 (33%) | 248 |
0.00013 (0.00161) |
0.0359 (0.0982) |
0.00703 (0.0299) |
0.00018 (0.00211) |
0.00264 (0.0154) |
0.00441 (0.021) |
0.0197 (0.0636) |
0.00157 (0.0104) |
16p loss | 109 (29%) | 261 |
1e-05 (0.000205) |
9e-05 (0.00116) |
1e-05 (0.000205) |
1e-05 (0.000205) |
0.0041 (0.0203) |
1e-05 (0.000205) |
1e-05 (0.000205) |
2e-05 (0.000312) |
19p gain | 56 (15%) | 314 |
0.584 (0.693) |
0.00386 (0.0195) |
0.00095 (0.00716) |
0.00823 (0.0337) |
0.0135 (0.0492) |
0.00462 (0.0216) |
0.00077 (0.00624) |
0.0368 (0.1) |
19q gain | 72 (19%) | 298 |
0.393 (0.524) |
0.00126 (0.00868) |
0.00226 (0.0139) |
2e-05 (0.000312) |
0.00018 (0.00211) |
0.0008 (0.0064) |
2e-05 (0.000312) |
0.00071 (0.00582) |
4q loss | 148 (40%) | 222 |
1e-05 (0.000205) |
0.0056 (0.0248) |
1e-05 (0.000205) |
0.00082 (0.0064) |
0.249 (0.394) |
0.00578 (0.0252) |
5e-05 (0.000729) |
0.00856 (0.0349) |
5q loss | 39 (11%) | 331 |
0.00313 (0.0174) |
0.00721 (0.0305) |
0.0236 (0.0712) |
0.00019 (0.00219) |
0.533 (0.641) |
0.0473 (0.122) |
0.00115 (0.00829) |
0.00126 (0.00868) |
9p loss | 118 (32%) | 252 |
2e-05 (0.000312) |
0.0223 (0.0681) |
0.00029 (0.00307) |
0.00452 (0.0213) |
0.109 (0.226) |
0.0092 (0.037) |
0.0306 (0.0874) |
0.0119 (0.0453) |
16q loss | 145 (39%) | 225 |
1e-05 (0.000205) |
1e-05 (0.000205) |
1e-05 (0.000205) |
1e-05 (0.000205) |
0.17 (0.308) |
1e-05 (0.000205) |
1e-05 (0.000205) |
1e-05 (0.000205) |
17p loss | 185 (50%) | 185 |
1e-05 (0.000205) |
0.0214 (0.0672) |
0.00509 (0.0235) |
0.0223 (0.0681) |
0.00355 (0.0188) |
0.00046 (0.00425) |
0.447 (0.566) |
0.00045 (0.00422) |
8q gain | 188 (51%) | 182 |
1e-05 (0.000205) |
0.0874 (0.192) |
1e-05 (0.000205) |
1e-05 (0.000205) |
0.0282 (0.0818) |
0.00383 (0.0195) |
0.134 (0.262) |
0.00018 (0.00211) |
10q gain | 37 (10%) | 333 |
0.00109 (0.00803) |
0.0295 (0.0848) |
2e-05 (0.000312) |
0.0713 (0.166) |
0.0651 (0.156) |
0.0433 (0.114) |
0.038 (0.103) |
0.0335 (0.0928) |
xq gain | 64 (17%) | 306 |
0.00115 (0.00829) |
0.0671 (0.159) |
0.00249 (0.015) |
0.0136 (0.0492) |
0.00633 (0.0271) |
0.00034 (0.00343) |
0.162 (0.299) |
0.00031 (0.00318) |
3p loss | 52 (14%) | 318 |
0.0325 (0.0913) |
0.428 (0.55) |
0.00759 (0.0315) |
0.00993 (0.0388) |
0.00737 (0.0308) |
0.32 (0.451) |
0.00125 (0.00868) |
0.0496 (0.127) |
4p loss | 107 (29%) | 263 |
1e-05 (0.000205) |
0.0593 (0.145) |
0.00121 (0.00863) |
0.0144 (0.0515) |
0.987 (0.987) |
0.0183 (0.0612) |
0.00548 (0.0248) |
0.00277 (0.0159) |
9q loss | 107 (29%) | 263 |
0.0003 (0.00312) |
0.0121 (0.0457) |
0.0126 (0.0468) |
0.00309 (0.0173) |
0.273 (0.414) |
0.0158 (0.0546) |
0.117 (0.236) |
0.00164 (0.0108) |
1q gain | 222 (60%) | 148 |
1e-05 (0.000205) |
6e-05 (0.000837) |
2e-05 (0.000312) |
0.00028 (0.00301) |
0.156 (0.291) |
0.00436 (0.0209) |
0.417 (0.54) |
0.0534 (0.134) |
6p gain | 117 (32%) | 253 |
1e-05 (0.000205) |
0.00224 (0.0139) |
0.0058 (0.0252) |
0.0273 (0.0797) |
0.144 (0.275) |
0.00264 (0.0154) |
0.324 (0.455) |
0.104 (0.218) |
8p gain | 80 (22%) | 290 |
7e-05 (0.000957) |
0.247 (0.393) |
0.0206 (0.0654) |
0.0351 (0.0963) |
0.0113 (0.0433) |
0.116 (0.235) |
0.15 (0.284) |
0.0149 (0.0528) |
10p gain | 61 (16%) | 309 |
0.0006 (0.00518) |
0.425 (0.548) |
0.00379 (0.0194) |
0.0214 (0.0672) |
0.272 (0.414) |
0.418 (0.541) |
0.0218 (0.0681) |
0.0189 (0.0625) |
12p gain | 41 (11%) | 329 |
0.0169 (0.0581) |
0.308 (0.44) |
0.0121 (0.0458) |
0.00063 (0.0053) |
0.787 (0.84) |
0.366 (0.5) |
0.00142 (0.00951) |
0.0237 (0.0712) |
17q gain | 95 (26%) | 275 |
0.00172 (0.0112) |
0.0461 (0.12) |
0.24 (0.391) |
0.119 (0.239) |
0.0197 (0.0636) |
0.0004 (0.00386) |
0.605 (0.709) |
0.0243 (0.0721) |
20p gain | 108 (29%) | 262 |
1e-05 (0.000205) |
0.18 (0.317) |
0.0326 (0.0913) |
0.00244 (0.0148) |
0.172 (0.311) |
0.0314 (0.0888) |
8e-05 (0.00107) |
0.0758 (0.173) |
10p loss | 45 (12%) | 325 |
0.0242 (0.0721) |
0.225 (0.373) |
0.00085 (0.00648) |
0.00266 (0.0154) |
0.612 (0.713) |
0.00568 (0.025) |
0.395 (0.525) |
0.0204 (0.0649) |
10q loss | 76 (21%) | 294 |
0.00939 (0.0373) |
0.0947 (0.204) |
1e-05 (0.000205) |
2e-05 (0.000312) |
0.313 (0.445) |
6e-05 (0.000837) |
0.452 (0.57) |
2e-05 (0.000312) |
14q loss | 107 (29%) | 263 |
1e-05 (0.000205) |
0.165 (0.301) |
1e-05 (0.000205) |
1e-05 (0.000205) |
0.479 (0.589) |
0.176 (0.315) |
0.0004 (0.00386) |
0.0155 (0.054) |
3p gain | 35 (9%) | 335 |
0.0384 (0.103) |
0.0471 (0.122) |
0.00261 (0.0154) |
0.0873 (0.192) |
0.134 (0.262) |
0.517 (0.629) |
0.0238 (0.0714) |
0.252 (0.397) |
4p gain | 27 (7%) | 343 |
0.0148 (0.0527) |
0.0124 (0.0462) |
0.00555 (0.0248) |
0.00191 (0.0123) |
0.294 (0.43) |
0.439 (0.559) |
0.0663 (0.158) |
0.207 (0.351) |
12q gain | 47 (13%) | 323 |
0.0229 (0.0697) |
0.48 (0.59) |
0.0137 (0.0492) |
0.00315 (0.0174) |
0.344 (0.477) |
0.622 (0.72) |
0.00063 (0.0053) |
0.0698 (0.163) |
22q gain | 48 (13%) | 322 |
2e-05 (0.000312) |
0.247 (0.393) |
0.0481 (0.124) |
0.00214 (0.0135) |
0.611 (0.713) |
0.738 (0.804) |
0.00216 (0.0135) |
0.135 (0.262) |
5p loss | 28 (8%) | 342 |
0.0247 (0.0731) |
0.213 (0.358) |
0.0549 (0.137) |
0.017 (0.0582) |
0.264 (0.408) |
0.0996 (0.211) |
0.00882 (0.0357) |
0.0181 (0.0608) |
11p loss | 65 (18%) | 305 |
0.464 (0.579) |
0.983 (0.986) |
0.0196 (0.0636) |
0.00412 (0.0203) |
0.643 (0.738) |
0.176 (0.315) |
0.00127 (0.00868) |
0.00557 (0.0248) |
15q loss | 67 (18%) | 303 |
0.0568 (0.14) |
0.0675 (0.159) |
3e-05 (0.000447) |
9e-05 (0.00116) |
0.155 (0.291) |
0.25 (0.394) |
2e-05 (0.000312) |
0.0174 (0.0593) |
1p gain | 57 (15%) | 313 |
0.29 (0.427) |
0.21 (0.355) |
0.029 (0.0837) |
0.379 (0.511) |
0.967 (0.976) |
0.0384 (0.103) |
0.112 (0.232) |
0.022 (0.0681) |
2q gain | 41 (11%) | 329 |
0.0872 (0.192) |
0.293 (0.43) |
0.0136 (0.0492) |
0.00048 (0.00437) |
0.696 (0.779) |
0.761 (0.822) |
0.00354 (0.0188) |
0.376 (0.509) |
18q gain | 28 (8%) | 342 |
0.0194 (0.0636) |
0.625 (0.721) |
0.0558 (0.138) |
0.00342 (0.0184) |
0.83 (0.879) |
0.0532 (0.134) |
0.02 (0.0641) |
0.283 (0.424) |
20q gain | 112 (30%) | 258 |
1e-05 (0.000205) |
0.191 (0.332) |
0.174 (0.314) |
0.00797 (0.0329) |
0.307 (0.44) |
0.075 (0.172) |
3e-05 (0.000447) |
0.0878 (0.192) |
7q loss | 21 (6%) | 349 |
0.437 (0.558) |
0.262 (0.406) |
0.0897 (0.195) |
0.0857 (0.192) |
0.56 (0.666) |
0.026 (0.0765) |
0.0001 (0.00126) |
0.00481 (0.0224) |
8p loss | 190 (51%) | 180 |
0.0002 (0.00222) |
0.0642 (0.154) |
0.0185 (0.0617) |
0.849 (0.892) |
0.242 (0.393) |
0.0299 (0.0856) |
0.451 (0.57) |
0.439 (0.559) |
18p loss | 74 (20%) | 296 |
0.0492 (0.126) |
0.0109 (0.0422) |
0.712 (0.783) |
0.00318 (0.0174) |
0.531 (0.64) |
0.713 (0.783) |
0.0679 (0.16) |
0.221 (0.368) |
18q loss | 79 (21%) | 291 |
0.00376 (0.0194) |
0.00359 (0.0188) |
0.647 (0.738) |
0.0005 (0.00449) |
0.205 (0.349) |
0.404 (0.531) |
0.116 (0.235) |
0.306 (0.44) |
19p loss | 55 (15%) | 315 |
1e-05 (0.000205) |
0.555 (0.663) |
0.0335 (0.0928) |
0.0989 (0.211) |
0.15 (0.284) |
0.08 (0.181) |
0.285 (0.425) |
0.00327 (0.0177) |
xp loss | 94 (25%) | 276 |
0.0327 (0.0913) |
0.0576 (0.141) |
0.18 (0.317) |
0.0223 (0.0681) |
0.128 (0.253) |
0.231 (0.379) |
0.00434 (0.0209) |
0.287 (0.426) |
2p gain | 44 (12%) | 326 |
0.163 (0.3) |
0.283 (0.424) |
0.115 (0.235) |
0.00036 (0.00358) |
0.549 (0.659) |
0.939 (0.952) |
0.00938 (0.0373) |
0.384 (0.516) |
3q gain | 38 (10%) | 332 |
0.298 (0.434) |
0.135 (0.262) |
0.00374 (0.0194) |
0.0927 (0.2) |
0.214 (0.36) |
0.512 (0.624) |
0.015 (0.0528) |
0.611 (0.713) |
6q gain | 67 (18%) | 303 |
0.00081 (0.0064) |
0.158 (0.293) |
0.038 (0.103) |
0.598 (0.705) |
0.2 (0.343) |
0.187 (0.327) |
0.205 (0.349) |
0.391 (0.522) |
7p gain | 111 (30%) | 259 |
0.0452 (0.119) |
0.086 (0.192) |
0.983 (0.986) |
0.905 (0.933) |
0.0433 (0.114) |
0.0737 (0.17) |
0.259 (0.403) |
0.337 (0.47) |
11p gain | 17 (5%) | 353 |
0.469 (0.581) |
0.293 (0.43) |
0.44 (0.559) |
0.0466 (0.121) |
0.302 (0.437) |
0.47 (0.581) |
0.0154 (0.054) |
0.274 (0.414) |
18p gain | 36 (10%) | 334 |
0.0221 (0.0681) |
0.217 (0.363) |
0.06 (0.145) |
0.0179 (0.0607) |
0.768 (0.825) |
0.192 (0.334) |
0.0869 (0.192) |
0.457 (0.574) |
2p loss | 33 (9%) | 337 |
0.0597 (0.145) |
0.712 (0.783) |
0.00948 (0.0375) |
0.0387 (0.103) |
0.379 (0.511) |
0.707 (0.783) |
0.199 (0.343) |
0.268 (0.412) |
2q loss | 38 (10%) | 332 |
0.188 (0.327) |
0.601 (0.705) |
0.00999 (0.0388) |
0.02 (0.0641) |
0.255 (0.399) |
0.594 (0.702) |
0.6 (0.705) |
0.407 (0.531) |
3q loss | 40 (11%) | 330 |
0.327 (0.458) |
0.665 (0.752) |
0.0188 (0.0623) |
0.0696 (0.163) |
0.0775 (0.176) |
0.313 (0.445) |
0.00531 (0.0244) |
0.273 (0.414) |
7p loss | 16 (4%) | 354 |
0.366 (0.5) |
0.286 (0.425) |
0.0557 (0.138) |
0.352 (0.485) |
0.878 (0.912) |
0.227 (0.373) |
0.00616 (0.0266) |
0.0395 (0.105) |
11q loss | 73 (20%) | 297 |
0.143 (0.274) |
0.779 (0.834) |
0.195 (0.337) |
0.126 (0.25) |
0.662 (0.752) |
0.303 (0.437) |
0.00306 (0.0173) |
0.0158 (0.0546) |
12p loss | 65 (18%) | 305 |
0.00083 (0.00641) |
0.116 (0.235) |
0.0273 (0.0797) |
0.274 (0.414) |
0.407 (0.531) |
0.164 (0.3) |
0.622 (0.72) |
0.435 (0.557) |
19q loss | 39 (11%) | 331 |
1e-05 (0.000205) |
0.381 (0.513) |
0.115 (0.235) |
0.586 (0.694) |
0.0308 (0.0876) |
0.156 (0.291) |
0.473 (0.583) |
0.247 (0.393) |
21q loss | 110 (30%) | 260 |
0.00052 (0.00461) |
0.738 (0.804) |
0.0002 (0.00222) |
0.126 (0.25) |
0.499 (0.611) |
0.931 (0.948) |
0.122 (0.245) |
0.307 (0.44) |
22q loss | 70 (19%) | 300 |
0.0346 (0.0955) |
0.0729 (0.169) |
0.00207 (0.0132) |
0.161 (0.298) |
0.506 (0.618) |
0.463 (0.579) |
0.105 (0.22) |
0.876 (0.912) |
5p gain | 135 (36%) | 235 |
0.00022 (0.00241) |
0.0913 (0.198) |
0.901 (0.931) |
0.804 (0.855) |
0.225 (0.373) |
0.176 (0.315) |
0.3 (0.436) |
0.582 (0.691) |
5q gain | 107 (29%) | 263 |
0.00422 (0.0207) |
0.127 (0.25) |
0.672 (0.756) |
0.945 (0.957) |
0.644 (0.738) |
0.851 (0.892) |
0.929 (0.948) |
0.894 (0.926) |
7q gain | 111 (30%) | 259 |
0.373 (0.506) |
0.00066 (0.00548) |
0.963 (0.974) |
0.879 (0.912) |
0.217 (0.363) |
0.207 (0.351) |
0.523 (0.634) |
0.342 (0.476) |
13q gain | 23 (6%) | 347 |
0.0097 (0.0381) |
0.327 (0.458) |
0.289 (0.427) |
0.41 (0.533) |
0.0772 (0.176) |
0.294 (0.43) |
0.18 (0.317) |
0.213 (0.358) |
16p gain | 31 (8%) | 339 |
0.174 (0.314) |
0.914 (0.936) |
0.0055 (0.0248) |
0.982 (0.986) |
0.769 (0.825) |
0.254 (0.397) |
0.102 (0.215) |
0.317 (0.448) |
16q gain | 17 (5%) | 353 |
0.906 (0.933) |
0.0576 (0.141) |
0.00102 (0.0076) |
0.314 (0.445) |
0.125 (0.25) |
0.912 (0.936) |
0.159 (0.295) |
0.706 (0.783) |
xp gain | 42 (11%) | 328 |
0.00042 (0.00399) |
0.299 (0.435) |
0.0546 (0.137) |
0.655 (0.745) |
0.436 (0.558) |
0.155 (0.291) |
0.984 (0.986) |
0.0523 (0.133) |
8q loss | 43 (12%) | 327 |
0.00138 (0.00933) |
0.115 (0.235) |
0.273 (0.414) |
0.548 (0.659) |
0.764 (0.824) |
0.935 (0.95) |
0.689 (0.773) |
0.9 (0.931) |
20q loss | 13 (4%) | 357 |
0.35 (0.484) |
0.203 (0.348) |
0.141 (0.271) |
0.112 (0.232) |
0.467 (0.581) |
0.639 (0.736) |
0.0129 (0.0475) |
0.258 (0.403) |
xq loss | 70 (19%) | 300 |
0.0123 (0.0461) |
0.139 (0.269) |
0.401 (0.528) |
0.308 (0.44) |
0.132 (0.26) |
0.699 (0.779) |
0.126 (0.25) |
0.746 (0.811) |
4q gain | 7 (2%) | 363 |
0.802 (0.854) |
0.619 (0.719) |
0.756 (0.821) |
0.406 (0.531) |
0.247 (0.393) |
0.848 (0.892) |
0.275 (0.414) |
0.557 (0.665) |
9p gain | 19 (5%) | 351 |
0.464 (0.579) |
0.406 (0.531) |
0.857 (0.895) |
0.671 (0.756) |
0.709 (0.783) |
0.4 (0.528) |
0.096 (0.206) |
0.364 (0.499) |
9q gain | 21 (6%) | 349 |
0.085 (0.191) |
0.6 (0.705) |
0.247 (0.393) |
0.392 (0.523) |
0.767 (0.825) |
0.416 (0.54) |
0.113 (0.232) |
0.235 (0.384) |
11q gain | 18 (5%) | 352 |
0.91 (0.936) |
0.782 (0.836) |
0.468 (0.581) |
0.244 (0.393) |
0.368 (0.502) |
0.701 (0.781) |
0.179 (0.317) |
0.344 (0.477) |
14q gain | 23 (6%) | 347 |
0.452 (0.57) |
0.469 (0.581) |
0.254 (0.397) |
0.152 (0.287) |
0.758 (0.821) |
0.15 (0.284) |
0.0669 (0.159) |
0.651 (0.741) |
15q gain | 33 (9%) | 337 |
0.646 (0.738) |
0.55 (0.659) |
0.979 (0.986) |
0.718 (0.787) |
0.851 (0.892) |
0.288 (0.427) |
0.529 (0.639) |
0.832 (0.881) |
17p gain | 30 (8%) | 340 |
0.101 (0.213) |
0.0849 (0.191) |
0.492 (0.603) |
0.0991 (0.211) |
0.396 (0.525) |
0.759 (0.821) |
0.0532 (0.134) |
0.141 (0.271) |
21q gain | 26 (7%) | 344 |
0.18 (0.317) |
0.809 (0.859) |
0.0721 (0.167) |
0.388 (0.519) |
0.924 (0.944) |
0.225 (0.373) |
0.246 (0.393) |
0.526 (0.636) |
1q loss | 22 (6%) | 348 |
0.37 (0.503) |
0.851 (0.892) |
0.229 (0.377) |
0.24 (0.391) |
0.356 (0.489) |
0.245 (0.393) |
0.285 (0.425) |
0.0612 (0.148) |
6p loss | 28 (8%) | 342 |
0.644 (0.738) |
0.77 (0.825) |
0.319 (0.45) |
0.712 (0.783) |
0.675 (0.758) |
0.722 (0.791) |
0.271 (0.414) |
0.244 (0.393) |
6q loss | 92 (25%) | 278 |
0.188 (0.327) |
0.432 (0.554) |
0.25 (0.394) |
0.731 (0.8) |
0.523 (0.634) |
0.14 (0.269) |
0.672 (0.756) |
0.836 (0.883) |
12q loss | 36 (10%) | 334 |
0.0889 (0.194) |
0.419 (0.541) |
0.4 (0.528) |
0.664 (0.752) |
0.877 (0.912) |
0.914 (0.936) |
0.698 (0.779) |
0.934 (0.95) |
17q loss | 39 (11%) | 331 |
0.371 (0.504) |
0.199 (0.343) |
0.349 (0.483) |
0.169 (0.307) |
0.178 (0.317) |
0.625 (0.721) |
0.271 (0.414) |
0.463 (0.579) |
20p loss | 26 (7%) | 344 |
0.265 (0.409) |
0.275 (0.414) |
0.622 (0.72) |
0.104 (0.218) |
0.0866 (0.192) |
0.854 (0.893) |
0.712 (0.783) |
0.304 (0.438) |
P value = 0.029 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
1P GAIN MUTATED | 18 | 10 | 9 | 9 | 9 |
1P GAIN WILD-TYPE | 43 | 87 | 59 | 60 | 60 |
P value = 0.0384 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
1P GAIN MUTATED | 12 | 8 | 11 | 20 | 5 |
1P GAIN WILD-TYPE | 32 | 87 | 45 | 102 | 43 |
P value = 0.022 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
1P GAIN MUTATED | 17 | 10 | 13 | 10 | 5 |
1P GAIN WILD-TYPE | 50 | 76 | 86 | 25 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
1Q GAIN MUTATED | 82 | 87 | 53 |
1Q GAIN WILD-TYPE | 27 | 37 | 84 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
1Q GAIN MUTATED | 36 | 103 | 83 |
1Q GAIN WILD-TYPE | 52 | 64 | 32 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
1Q GAIN MUTATED | 36 | 40 | 55 | 39 | 47 |
1Q GAIN WILD-TYPE | 25 | 57 | 13 | 30 | 22 |
P value = 0.00028 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
1Q GAIN MUTATED | 28 | 35 | 52 | 63 | 39 |
1Q GAIN WILD-TYPE | 26 | 21 | 62 | 21 | 17 |
P value = 0.00436 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
1Q GAIN MUTATED | 27 | 43 | 40 | 73 | 35 |
1Q GAIN WILD-TYPE | 17 | 52 | 16 | 49 | 13 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
2P GAIN MUTATED | 13 | 2 | 6 | 16 | 5 |
2P GAIN WILD-TYPE | 41 | 54 | 108 | 68 | 51 |
P value = 0.00938 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
2P GAIN MUTATED | 18 | 11 | 6 | 6 |
2P GAIN WILD-TYPE | 74 | 76 | 113 | 36 |
P value = 0.0136 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
2Q GAIN MUTATED | 6 | 3 | 13 | 9 | 8 |
2Q GAIN WILD-TYPE | 55 | 94 | 55 | 60 | 61 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
2Q GAIN MUTATED | 10 | 2 | 4 | 16 | 7 |
2Q GAIN WILD-TYPE | 44 | 54 | 110 | 68 | 49 |
P value = 0.00354 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
2Q GAIN MUTATED | 18 | 9 | 5 | 6 |
2Q GAIN WILD-TYPE | 74 | 78 | 114 | 36 |
P value = 0.0384 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
3P GAIN MUTATED | 10 | 18 | 7 |
3P GAIN WILD-TYPE | 99 | 106 | 130 |
P value = 0.0471 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
3P GAIN MUTATED | 5 | 23 | 7 |
3P GAIN WILD-TYPE | 83 | 144 | 108 |
P value = 0.00261 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
3P GAIN MUTATED | 10 | 8 | 7 | 0 | 10 |
3P GAIN WILD-TYPE | 51 | 89 | 61 | 69 | 59 |
P value = 0.0238 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
3P GAIN MUTATED | 12 | 2 | 10 | 6 |
3P GAIN WILD-TYPE | 80 | 85 | 109 | 36 |
P value = 0.00374 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
3Q GAIN MUTATED | 13 | 9 | 6 | 1 | 9 |
3Q GAIN WILD-TYPE | 48 | 88 | 62 | 68 | 60 |
P value = 0.015 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
3Q GAIN MUTATED | 10 | 3 | 11 | 9 |
3Q GAIN WILD-TYPE | 82 | 84 | 108 | 33 |
P value = 0.0148 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
4P GAIN MUTATED | 6 | 16 | 5 |
4P GAIN WILD-TYPE | 103 | 108 | 132 |
P value = 0.0124 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
4P GAIN MUTATED | 6 | 6 | 15 |
4P GAIN WILD-TYPE | 82 | 161 | 100 |
P value = 0.00555 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
4P GAIN MUTATED | 2 | 6 | 12 | 5 | 1 |
4P GAIN WILD-TYPE | 59 | 91 | 56 | 64 | 68 |
P value = 0.00191 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
4P GAIN MUTATED | 5 | 3 | 3 | 14 | 1 |
4P GAIN WILD-TYPE | 49 | 53 | 111 | 70 | 55 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
5P GAIN MUTATED | 47 | 56 | 32 |
5P GAIN WILD-TYPE | 62 | 68 | 105 |
P value = 0.00422 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
5Q GAIN MUTATED | 42 | 38 | 27 |
5Q GAIN WILD-TYPE | 67 | 86 | 110 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
6P GAIN MUTATED | 37 | 58 | 22 |
6P GAIN WILD-TYPE | 72 | 66 | 115 |
P value = 0.00224 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
6P GAIN MUTATED | 15 | 61 | 41 |
6P GAIN WILD-TYPE | 73 | 106 | 74 |
P value = 0.0058 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
6P GAIN MUTATED | 23 | 22 | 26 | 15 | 31 |
6P GAIN WILD-TYPE | 38 | 75 | 42 | 54 | 38 |
P value = 0.0273 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
6P GAIN MUTATED | 16 | 11 | 32 | 33 | 25 |
6P GAIN WILD-TYPE | 38 | 45 | 82 | 51 | 31 |
P value = 0.00264 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
6P GAIN MUTATED | 19 | 18 | 19 | 37 | 23 |
6P GAIN WILD-TYPE | 25 | 77 | 37 | 85 | 25 |
P value = 0.00081 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
6Q GAIN MUTATED | 24 | 31 | 12 |
6Q GAIN WILD-TYPE | 85 | 93 | 125 |
P value = 0.038 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
6Q GAIN MUTATED | 18 | 12 | 14 | 8 | 15 |
6Q GAIN WILD-TYPE | 43 | 85 | 54 | 61 | 54 |
P value = 0.0452 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
7P GAIN MUTATED | 35 | 45 | 31 |
7P GAIN WILD-TYPE | 74 | 79 | 106 |
P value = 0.0433 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
7P GAIN MUTATED | 14 | 49 | 11 | 34 |
7P GAIN WILD-TYPE | 51 | 78 | 38 | 90 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
7Q GAIN MUTATED | 20 | 67 | 24 |
7Q GAIN WILD-TYPE | 68 | 100 | 91 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
8P GAIN MUTATED | 39 | 25 | 16 |
8P GAIN WILD-TYPE | 70 | 99 | 121 |
P value = 0.0206 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
8P GAIN MUTATED | 14 | 11 | 13 | 21 | 19 |
8P GAIN WILD-TYPE | 47 | 86 | 55 | 48 | 50 |
P value = 0.0351 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
8P GAIN MUTATED | 12 | 14 | 14 | 25 | 13 |
8P GAIN WILD-TYPE | 42 | 42 | 100 | 59 | 43 |
P value = 0.0113 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
8P GAIN MUTATED | 5 | 29 | 14 | 31 |
8P GAIN WILD-TYPE | 60 | 98 | 35 | 93 |
P value = 0.0149 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
8P GAIN MUTATED | 17 | 9 | 28 | 7 | 16 |
8P GAIN WILD-TYPE | 50 | 77 | 71 | 28 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
8Q GAIN MUTATED | 97 | 61 | 30 |
8Q GAIN WILD-TYPE | 12 | 63 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
8Q GAIN MUTATED | 37 | 25 | 38 | 38 | 45 |
8Q GAIN WILD-TYPE | 24 | 72 | 30 | 31 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
8Q GAIN MUTATED | 31 | 31 | 33 | 52 | 36 |
8Q GAIN WILD-TYPE | 23 | 25 | 81 | 32 | 20 |
P value = 0.0282 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
8Q GAIN MUTATED | 22 | 70 | 26 | 67 |
8Q GAIN WILD-TYPE | 43 | 57 | 23 | 57 |
P value = 0.00383 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
8Q GAIN MUTATED | 20 | 34 | 29 | 71 | 31 |
8Q GAIN WILD-TYPE | 24 | 61 | 27 | 51 | 17 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
8Q GAIN MUTATED | 42 | 29 | 56 | 14 | 35 |
8Q GAIN WILD-TYPE | 25 | 57 | 43 | 21 | 18 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
10P GAIN MUTATED | 21 | 30 | 10 |
10P GAIN WILD-TYPE | 88 | 94 | 127 |
P value = 0.00379 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
10P GAIN MUTATED | 9 | 9 | 21 | 7 | 13 |
10P GAIN WILD-TYPE | 52 | 88 | 47 | 62 | 56 |
P value = 0.0214 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
10P GAIN MUTATED | 11 | 6 | 11 | 22 | 9 |
10P GAIN WILD-TYPE | 43 | 50 | 103 | 62 | 47 |
P value = 0.0218 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
10P GAIN MUTATED | 23 | 12 | 12 | 9 |
10P GAIN WILD-TYPE | 69 | 75 | 107 | 33 |
P value = 0.0189 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
10P GAIN MUTATED | 18 | 7 | 17 | 8 | 6 |
10P GAIN WILD-TYPE | 49 | 79 | 82 | 27 | 47 |
P value = 0.00109 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
10Q GAIN MUTATED | 16 | 17 | 4 |
10Q GAIN WILD-TYPE | 93 | 107 | 133 |
P value = 0.0295 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
10Q GAIN MUTATED | 3 | 18 | 16 |
10Q GAIN WILD-TYPE | 85 | 149 | 99 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
10Q GAIN MUTATED | 1 | 4 | 18 | 4 | 10 |
10Q GAIN WILD-TYPE | 60 | 93 | 50 | 65 | 59 |
P value = 0.0433 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
10Q GAIN MUTATED | 3 | 4 | 11 | 14 | 5 |
10Q GAIN WILD-TYPE | 41 | 91 | 45 | 108 | 43 |
P value = 0.038 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
10Q GAIN MUTATED | 13 | 6 | 6 | 7 |
10Q GAIN WILD-TYPE | 79 | 81 | 113 | 35 |
P value = 0.0335 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
10Q GAIN MUTATED | 11 | 2 | 11 | 3 | 5 |
10Q GAIN WILD-TYPE | 56 | 84 | 88 | 32 | 48 |
P value = 0.0466 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
11P GAIN MUTATED | 5 | 2 | 3 | 7 | 0 |
11P GAIN WILD-TYPE | 49 | 54 | 111 | 77 | 56 |
P value = 0.0154 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
11P GAIN MUTATED | 5 | 5 | 1 | 5 |
11P GAIN WILD-TYPE | 87 | 82 | 118 | 37 |
P value = 0.0169 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
12P GAIN MUTATED | 12 | 21 | 8 |
12P GAIN WILD-TYPE | 97 | 103 | 129 |
P value = 0.0121 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
12P GAIN MUTATED | 12 | 5 | 12 | 8 | 4 |
12P GAIN WILD-TYPE | 49 | 92 | 56 | 61 | 65 |
P value = 0.00063 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
12P GAIN MUTATED | 14 | 2 | 10 | 13 | 2 |
12P GAIN WILD-TYPE | 40 | 54 | 104 | 71 | 54 |
P value = 0.00142 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
12P GAIN MUTATED | 18 | 10 | 4 | 5 |
12P GAIN WILD-TYPE | 74 | 77 | 115 | 37 |
P value = 0.0237 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
12P GAIN MUTATED | 13 | 7 | 11 | 5 | 1 |
12P GAIN WILD-TYPE | 54 | 79 | 88 | 30 | 52 |
P value = 0.0229 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
12Q GAIN MUTATED | 14 | 23 | 10 |
12Q GAIN WILD-TYPE | 95 | 101 | 127 |
P value = 0.0137 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
12Q GAIN MUTATED | 13 | 7 | 13 | 10 | 4 |
12Q GAIN WILD-TYPE | 48 | 90 | 55 | 59 | 65 |
P value = 0.00315 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
12Q GAIN MUTATED | 14 | 4 | 12 | 15 | 2 |
12Q GAIN WILD-TYPE | 40 | 52 | 102 | 69 | 54 |
P value = 0.00063 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
12Q GAIN MUTATED | 21 | 11 | 5 | 6 |
12Q GAIN WILD-TYPE | 71 | 76 | 114 | 36 |
P value = 0.0097 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
13Q GAIN MUTATED | 6 | 14 | 3 |
13Q GAIN WILD-TYPE | 103 | 110 | 134 |
P value = 0.0055 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
16P GAIN MUTATED | 8 | 6 | 1 | 12 | 4 |
16P GAIN WILD-TYPE | 53 | 91 | 67 | 57 | 65 |
P value = 0.00102 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
16Q GAIN MUTATED | 2 | 2 | 0 | 10 | 3 |
16Q GAIN WILD-TYPE | 59 | 95 | 68 | 59 | 66 |
P value = 0.00172 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
17Q GAIN MUTATED | 27 | 45 | 23 |
17Q GAIN WILD-TYPE | 82 | 79 | 114 |
P value = 0.0461 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
17Q GAIN MUTATED | 14 | 47 | 34 |
17Q GAIN WILD-TYPE | 74 | 120 | 81 |
P value = 0.0197 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
17Q GAIN MUTATED | 21 | 42 | 8 | 24 |
17Q GAIN WILD-TYPE | 44 | 85 | 41 | 100 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
17Q GAIN MUTATED | 22 | 21 | 17 | 20 | 15 |
17Q GAIN WILD-TYPE | 22 | 74 | 39 | 102 | 33 |
P value = 0.0243 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
17Q GAIN MUTATED | 23 | 19 | 17 | 14 | 16 |
17Q GAIN WILD-TYPE | 44 | 67 | 82 | 21 | 37 |
P value = 0.0221 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
18P GAIN MUTATED | 10 | 19 | 7 |
18P GAIN WILD-TYPE | 99 | 105 | 130 |
P value = 0.0179 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
18P GAIN MUTATED | 10 | 4 | 7 | 13 | 2 |
18P GAIN WILD-TYPE | 44 | 52 | 107 | 71 | 54 |
P value = 0.0194 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
18Q GAIN MUTATED | 7 | 16 | 5 |
18Q GAIN WILD-TYPE | 102 | 108 | 132 |
P value = 0.00342 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
18Q GAIN MUTATED | 9 | 4 | 5 | 10 | 0 |
18Q GAIN WILD-TYPE | 45 | 52 | 109 | 74 | 56 |
P value = 0.02 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
18Q GAIN MUTATED | 12 | 9 | 3 | 3 |
18Q GAIN WILD-TYPE | 80 | 78 | 116 | 39 |
P value = 0.00386 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
19P GAIN MUTATED | 14 | 15 | 27 |
19P GAIN WILD-TYPE | 74 | 152 | 88 |
P value = 0.00095 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
19P GAIN MUTATED | 7 | 11 | 17 | 17 | 3 |
19P GAIN WILD-TYPE | 54 | 86 | 51 | 52 | 66 |
P value = 0.00823 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
19P GAIN MUTATED | 10 | 11 | 11 | 20 | 3 |
19P GAIN WILD-TYPE | 44 | 45 | 103 | 64 | 53 |
P value = 0.0135 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
19P GAIN MUTATED | 6 | 12 | 9 | 28 |
19P GAIN WILD-TYPE | 59 | 115 | 40 | 96 |
P value = 0.00462 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
19P GAIN MUTATED | 4 | 12 | 11 | 27 | 1 |
19P GAIN WILD-TYPE | 40 | 83 | 45 | 95 | 47 |
P value = 0.00077 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
19P GAIN MUTATED | 18 | 19 | 6 | 8 |
19P GAIN WILD-TYPE | 74 | 68 | 113 | 34 |
P value = 0.0368 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
19P GAIN MUTATED | 11 | 11 | 23 | 3 | 3 |
19P GAIN WILD-TYPE | 56 | 75 | 76 | 32 | 50 |
P value = 0.00126 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
19Q GAIN MUTATED | 16 | 21 | 35 |
19Q GAIN WILD-TYPE | 72 | 146 | 80 |
P value = 0.00226 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
19Q GAIN MUTATED | 10 | 14 | 21 | 20 | 6 |
19Q GAIN WILD-TYPE | 51 | 83 | 47 | 49 | 63 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
19Q GAIN MUTATED | 11 | 15 | 12 | 29 | 4 |
19Q GAIN WILD-TYPE | 43 | 41 | 102 | 55 | 52 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
19Q GAIN MUTATED | 7 | 14 | 13 | 37 |
19Q GAIN WILD-TYPE | 58 | 113 | 36 | 87 |
P value = 8e-04 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
19Q GAIN MUTATED | 7 | 13 | 17 | 32 | 2 |
19Q GAIN WILD-TYPE | 37 | 82 | 39 | 90 | 46 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
19Q GAIN MUTATED | 23 | 24 | 7 | 12 |
19Q GAIN WILD-TYPE | 69 | 63 | 112 | 30 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
19Q GAIN MUTATED | 19 | 12 | 27 | 6 | 2 |
19Q GAIN WILD-TYPE | 48 | 74 | 72 | 29 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
20P GAIN MUTATED | 28 | 58 | 22 |
20P GAIN WILD-TYPE | 81 | 66 | 115 |
P value = 0.0326 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
20P GAIN MUTATED | 21 | 23 | 30 | 18 | 16 |
20P GAIN WILD-TYPE | 40 | 74 | 38 | 51 | 53 |
P value = 0.00244 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
20P GAIN MUTATED | 19 | 15 | 26 | 38 | 10 |
20P GAIN WILD-TYPE | 35 | 41 | 88 | 46 | 46 |
P value = 0.0314 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
20P GAIN MUTATED | 18 | 21 | 22 | 37 | 9 |
20P GAIN WILD-TYPE | 26 | 74 | 34 | 85 | 39 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
20P GAIN MUTATED | 34 | 23 | 20 | 22 |
20P GAIN WILD-TYPE | 58 | 64 | 99 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
20Q GAIN MUTATED | 30 | 59 | 23 |
20Q GAIN WILD-TYPE | 79 | 65 | 114 |
P value = 0.00797 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
20Q GAIN MUTATED | 18 | 15 | 31 | 38 | 10 |
20Q GAIN WILD-TYPE | 36 | 41 | 83 | 46 | 46 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
20Q GAIN MUTATED | 36 | 23 | 21 | 22 |
20Q GAIN WILD-TYPE | 56 | 64 | 98 | 20 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
22Q GAIN MUTATED | 13 | 29 | 6 |
22Q GAIN WILD-TYPE | 96 | 95 | 131 |
P value = 0.0481 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
22Q GAIN MUTATED | 7 | 8 | 17 | 8 | 8 |
22Q GAIN WILD-TYPE | 54 | 89 | 51 | 61 | 61 |
P value = 0.00214 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
22Q GAIN MUTATED | 14 | 5 | 8 | 17 | 4 |
22Q GAIN WILD-TYPE | 40 | 51 | 106 | 67 | 52 |
P value = 0.00216 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
22Q GAIN MUTATED | 17 | 10 | 6 | 10 |
22Q GAIN WILD-TYPE | 75 | 77 | 113 | 32 |
P value = 0.00042 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
XP GAIN MUTATED | 22 | 14 | 6 |
XP GAIN WILD-TYPE | 87 | 110 | 131 |
P value = 0.00115 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
XQ GAIN MUTATED | 30 | 21 | 13 |
XQ GAIN WILD-TYPE | 79 | 103 | 124 |
P value = 0.00249 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
XQ GAIN MUTATED | 6 | 16 | 8 | 10 | 24 |
XQ GAIN WILD-TYPE | 55 | 81 | 60 | 59 | 45 |
P value = 0.0136 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
XQ GAIN MUTATED | 7 | 7 | 21 | 10 | 19 |
XQ GAIN WILD-TYPE | 47 | 49 | 93 | 74 | 37 |
P value = 0.00633 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
XQ GAIN MUTATED | 6 | 34 | 7 | 16 |
XQ GAIN WILD-TYPE | 59 | 93 | 42 | 108 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
XQ GAIN MUTATED | 5 | 15 | 9 | 14 | 20 |
XQ GAIN WILD-TYPE | 39 | 80 | 47 | 108 | 28 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
XQ GAIN MUTATED | 12 | 11 | 11 | 3 | 21 |
XQ GAIN WILD-TYPE | 55 | 75 | 88 | 32 | 32 |
P value = 0.00287 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
1P LOSS MUTATED | 23 | 39 | 19 |
1P LOSS WILD-TYPE | 86 | 85 | 118 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
1P LOSS MUTATED | 10 | 27 | 44 |
1P LOSS WILD-TYPE | 78 | 140 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
1P LOSS MUTATED | 9 | 13 | 36 | 14 | 8 |
1P LOSS WILD-TYPE | 52 | 84 | 32 | 55 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
1P LOSS MUTATED | 12 | 9 | 14 | 38 | 7 |
1P LOSS WILD-TYPE | 42 | 47 | 100 | 46 | 49 |
P value = 0.00399 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
1P LOSS MUTATED | 5 | 26 | 14 | 35 |
1P LOSS WILD-TYPE | 60 | 101 | 35 | 89 |
P value = 0.0073 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
1P LOSS MUTATED | 5 | 17 | 17 | 36 | 5 |
1P LOSS WILD-TYPE | 39 | 78 | 39 | 86 | 43 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
1P LOSS MUTATED | 26 | 20 | 13 | 16 |
1P LOSS WILD-TYPE | 66 | 67 | 106 | 26 |
P value = 0.00436 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
1P LOSS MUTATED | 16 | 15 | 34 | 4 | 6 |
1P LOSS WILD-TYPE | 51 | 71 | 65 | 31 | 47 |
P value = 0.00948 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
2P LOSS MUTATED | 12 | 8 | 6 | 6 | 1 |
2P LOSS WILD-TYPE | 49 | 89 | 62 | 63 | 68 |
P value = 0.0387 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
2P LOSS MUTATED | 6 | 7 | 10 | 10 | 0 |
2P LOSS WILD-TYPE | 48 | 49 | 104 | 74 | 56 |
P value = 0.00999 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
2Q LOSS MUTATED | 11 | 13 | 8 | 5 | 1 |
2Q LOSS WILD-TYPE | 50 | 84 | 60 | 64 | 68 |
P value = 0.02 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
2Q LOSS MUTATED | 5 | 7 | 16 | 10 | 0 |
2Q LOSS WILD-TYPE | 49 | 49 | 98 | 74 | 56 |
P value = 0.0325 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
3P LOSS MUTATED | 11 | 26 | 15 |
3P LOSS WILD-TYPE | 98 | 98 | 122 |
P value = 0.00759 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
3P LOSS MUTATED | 9 | 7 | 16 | 14 | 5 |
3P LOSS WILD-TYPE | 52 | 90 | 52 | 55 | 64 |
P value = 0.00993 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
3P LOSS MUTATED | 14 | 5 | 10 | 17 | 5 |
3P LOSS WILD-TYPE | 40 | 51 | 104 | 67 | 51 |
P value = 0.00737 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
3P LOSS MUTATED | 3 | 16 | 5 | 27 |
3P LOSS WILD-TYPE | 62 | 111 | 44 | 97 |
P value = 0.00125 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
3P LOSS MUTATED | 20 | 17 | 7 | 3 |
3P LOSS WILD-TYPE | 72 | 70 | 112 | 39 |
P value = 0.0496 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
3P LOSS MUTATED | 12 | 10 | 20 | 2 | 3 |
3P LOSS WILD-TYPE | 55 | 76 | 79 | 33 | 50 |
P value = 0.0188 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
3Q LOSS MUTATED | 7 | 6 | 15 | 7 | 4 |
3Q LOSS WILD-TYPE | 54 | 91 | 53 | 62 | 65 |
P value = 0.00531 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
3Q LOSS MUTATED | 18 | 9 | 6 | 2 |
3Q LOSS WILD-TYPE | 74 | 78 | 113 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
4P LOSS MUTATED | 25 | 60 | 22 |
4P LOSS WILD-TYPE | 84 | 64 | 115 |
P value = 0.00121 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
4P LOSS MUTATED | 26 | 27 | 28 | 13 | 12 |
4P LOSS WILD-TYPE | 35 | 70 | 40 | 56 | 57 |
P value = 0.0144 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
4P LOSS MUTATED | 15 | 11 | 38 | 33 | 9 |
4P LOSS WILD-TYPE | 39 | 45 | 76 | 51 | 47 |
P value = 0.0183 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
4P LOSS MUTATED | 14 | 27 | 25 | 33 | 7 |
4P LOSS WILD-TYPE | 30 | 68 | 31 | 89 | 41 |
P value = 0.00548 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
4P LOSS MUTATED | 39 | 21 | 25 | 14 |
4P LOSS WILD-TYPE | 53 | 66 | 94 | 28 |
P value = 0.00277 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
4P LOSS MUTATED | 30 | 27 | 24 | 11 | 7 |
4P LOSS WILD-TYPE | 37 | 59 | 75 | 24 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
4Q LOSS MUTATED | 34 | 85 | 29 |
4Q LOSS WILD-TYPE | 75 | 39 | 108 |
P value = 0.0056 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
4Q LOSS MUTATED | 26 | 63 | 59 |
4Q LOSS WILD-TYPE | 62 | 104 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
4Q LOSS MUTATED | 32 | 35 | 45 | 18 | 16 |
4Q LOSS WILD-TYPE | 29 | 62 | 23 | 51 | 53 |
P value = 0.00082 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
4Q LOSS MUTATED | 24 | 19 | 44 | 47 | 12 |
4Q LOSS WILD-TYPE | 30 | 37 | 70 | 37 | 44 |
P value = 0.00578 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
4Q LOSS MUTATED | 18 | 37 | 30 | 53 | 9 |
4Q LOSS WILD-TYPE | 26 | 58 | 26 | 69 | 39 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
4Q LOSS MUTATED | 49 | 33 | 32 | 26 |
4Q LOSS WILD-TYPE | 43 | 54 | 87 | 16 |
P value = 0.00856 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
4Q LOSS MUTATED | 35 | 36 | 44 | 14 | 11 |
4Q LOSS WILD-TYPE | 32 | 50 | 55 | 21 | 42 |
P value = 0.0247 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
5P LOSS MUTATED | 4 | 16 | 8 |
5P LOSS WILD-TYPE | 105 | 108 | 129 |
P value = 0.017 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
5P LOSS MUTATED | 7 | 1 | 6 | 12 | 2 |
5P LOSS WILD-TYPE | 47 | 55 | 108 | 72 | 54 |
P value = 0.00882 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
5P LOSS MUTATED | 12 | 2 | 6 | 6 |
5P LOSS WILD-TYPE | 80 | 85 | 113 | 36 |
P value = 0.0181 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
5P LOSS MUTATED | 10 | 5 | 7 | 4 | 0 |
5P LOSS WILD-TYPE | 57 | 81 | 92 | 31 | 53 |
P value = 0.00313 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
5Q LOSS MUTATED | 7 | 23 | 9 |
5Q LOSS WILD-TYPE | 102 | 101 | 128 |
P value = 0.00721 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
5Q LOSS MUTATED | 7 | 11 | 21 |
5Q LOSS WILD-TYPE | 81 | 156 | 94 |
P value = 0.0236 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
5Q LOSS MUTATED | 10 | 7 | 13 | 6 | 3 |
5Q LOSS WILD-TYPE | 51 | 90 | 55 | 63 | 66 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
5Q LOSS MUTATED | 13 | 1 | 9 | 14 | 2 |
5Q LOSS WILD-TYPE | 41 | 55 | 105 | 70 | 54 |
P value = 0.0473 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
5Q LOSS MUTATED | 6 | 11 | 8 | 14 | 0 |
5Q LOSS WILD-TYPE | 38 | 84 | 48 | 108 | 48 |
P value = 0.00115 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
5Q LOSS MUTATED | 19 | 5 | 6 | 6 |
5Q LOSS WILD-TYPE | 73 | 82 | 113 | 36 |
P value = 0.00126 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
5Q LOSS MUTATED | 15 | 8 | 9 | 4 | 0 |
5Q LOSS WILD-TYPE | 52 | 78 | 90 | 31 | 53 |
P value = 0.00616 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
7P LOSS MUTATED | 10 | 3 | 1 | 2 |
7P LOSS WILD-TYPE | 82 | 84 | 118 | 40 |
P value = 0.0395 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
7P LOSS MUTATED | 7 | 5 | 2 | 2 | 0 |
7P LOSS WILD-TYPE | 60 | 81 | 97 | 33 | 53 |
P value = 0.026 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
7Q LOSS MUTATED | 6 | 6 | 5 | 4 | 0 |
7Q LOSS WILD-TYPE | 38 | 89 | 51 | 118 | 48 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
7Q LOSS MUTATED | 14 | 3 | 1 | 3 |
7Q LOSS WILD-TYPE | 78 | 84 | 118 | 39 |
P value = 0.00481 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
7Q LOSS MUTATED | 7 | 5 | 3 | 6 | 0 |
7Q LOSS WILD-TYPE | 60 | 81 | 96 | 29 | 53 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
8P LOSS MUTATED | 66 | 73 | 51 |
8P LOSS WILD-TYPE | 43 | 51 | 86 |
P value = 0.0185 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
8P LOSS MUTATED | 34 | 48 | 44 | 25 | 35 |
8P LOSS WILD-TYPE | 27 | 49 | 24 | 44 | 34 |
P value = 0.0299 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
8P LOSS MUTATED | 23 | 45 | 38 | 53 | 28 |
8P LOSS WILD-TYPE | 21 | 50 | 18 | 69 | 20 |
P value = 0.00138 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
8Q LOSS MUTATED | 6 | 25 | 12 |
8Q LOSS WILD-TYPE | 103 | 99 | 125 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
9P LOSS MUTATED | 31 | 58 | 29 |
9P LOSS WILD-TYPE | 78 | 66 | 108 |
P value = 0.0223 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
9P LOSS MUTATED | 22 | 48 | 48 |
9P LOSS WILD-TYPE | 66 | 119 | 67 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
9P LOSS MUTATED | 24 | 26 | 34 | 21 | 11 |
9P LOSS WILD-TYPE | 37 | 71 | 34 | 48 | 58 |
P value = 0.00452 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
9P LOSS MUTATED | 21 | 17 | 30 | 38 | 10 |
9P LOSS WILD-TYPE | 33 | 39 | 84 | 46 | 46 |
P value = 0.0092 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
9P LOSS MUTATED | 15 | 28 | 22 | 47 | 6 |
9P LOSS WILD-TYPE | 29 | 67 | 34 | 75 | 42 |
P value = 0.0306 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
9P LOSS MUTATED | 31 | 31 | 30 | 21 |
9P LOSS WILD-TYPE | 61 | 56 | 89 | 21 |
P value = 0.0119 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
9P LOSS MUTATED | 28 | 26 | 39 | 12 | 8 |
9P LOSS WILD-TYPE | 39 | 60 | 60 | 23 | 45 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
9Q LOSS MUTATED | 28 | 52 | 27 |
9Q LOSS WILD-TYPE | 81 | 72 | 110 |
P value = 0.0121 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
9Q LOSS MUTATED | 19 | 43 | 45 |
9Q LOSS WILD-TYPE | 69 | 124 | 70 |
P value = 0.0126 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
9Q LOSS MUTATED | 23 | 27 | 26 | 20 | 10 |
9Q LOSS WILD-TYPE | 38 | 70 | 42 | 49 | 59 |
P value = 0.00309 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
9Q LOSS MUTATED | 19 | 15 | 30 | 35 | 7 |
9Q LOSS WILD-TYPE | 35 | 41 | 84 | 49 | 49 |
P value = 0.0158 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
9Q LOSS MUTATED | 14 | 25 | 20 | 41 | 5 |
9Q LOSS WILD-TYPE | 30 | 70 | 36 | 81 | 43 |
P value = 0.00164 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
9Q LOSS MUTATED | 26 | 22 | 35 | 12 | 5 |
9Q LOSS WILD-TYPE | 41 | 64 | 64 | 23 | 48 |
P value = 0.0242 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
10P LOSS MUTATED | 6 | 20 | 19 |
10P LOSS WILD-TYPE | 103 | 104 | 118 |
P value = 0.00085 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
10P LOSS MUTATED | 13 | 17 | 3 | 10 | 2 |
10P LOSS WILD-TYPE | 48 | 80 | 65 | 59 | 67 |
P value = 0.00266 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
10P LOSS MUTATED | 12 | 4 | 21 | 6 | 2 |
10P LOSS WILD-TYPE | 42 | 52 | 93 | 78 | 54 |
P value = 0.00568 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
10P LOSS MUTATED | 4 | 20 | 2 | 17 | 2 |
10P LOSS WILD-TYPE | 40 | 75 | 54 | 105 | 46 |
P value = 0.0204 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
10P LOSS MUTATED | 6 | 19 | 13 | 3 | 2 |
10P LOSS WILD-TYPE | 61 | 67 | 86 | 32 | 51 |
P value = 0.00939 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
10Q LOSS MUTATED | 12 | 32 | 32 |
10Q LOSS WILD-TYPE | 97 | 92 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
10Q LOSS MUTATED | 28 | 25 | 4 | 14 | 4 |
10Q LOSS WILD-TYPE | 33 | 72 | 64 | 55 | 65 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
10Q LOSS MUTATED | 23 | 8 | 30 | 9 | 5 |
10Q LOSS WILD-TYPE | 31 | 48 | 84 | 75 | 51 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
10Q LOSS MUTATED | 10 | 34 | 7 | 23 | 2 |
10Q LOSS WILD-TYPE | 34 | 61 | 49 | 99 | 46 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
10Q LOSS MUTATED | 15 | 32 | 17 | 9 | 1 |
10Q LOSS WILD-TYPE | 52 | 54 | 82 | 26 | 52 |
P value = 0.0196 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
11P LOSS MUTATED | 20 | 11 | 12 | 11 | 10 |
11P LOSS WILD-TYPE | 41 | 86 | 56 | 58 | 59 |
P value = 0.00412 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
11P LOSS MUTATED | 15 | 5 | 15 | 23 | 6 |
11P LOSS WILD-TYPE | 39 | 51 | 99 | 61 | 50 |
P value = 0.00127 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
11P LOSS MUTATED | 27 | 12 | 11 | 9 |
11P LOSS WILD-TYPE | 65 | 75 | 108 | 33 |
P value = 0.00557 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
11P LOSS MUTATED | 22 | 13 | 14 | 6 | 4 |
11P LOSS WILD-TYPE | 45 | 73 | 85 | 29 | 49 |
P value = 0.00306 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
11Q LOSS MUTATED | 30 | 12 | 16 | 9 |
11Q LOSS WILD-TYPE | 62 | 75 | 103 | 33 |
P value = 0.0158 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
11Q LOSS MUTATED | 22 | 19 | 15 | 6 | 5 |
11Q LOSS WILD-TYPE | 45 | 67 | 84 | 29 | 48 |
P value = 0.00083 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
12P LOSS MUTATED | 15 | 35 | 15 |
12P LOSS WILD-TYPE | 94 | 89 | 122 |
P value = 0.0273 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
12P LOSS MUTATED | 19 | 20 | 9 | 9 | 8 |
12P LOSS WILD-TYPE | 42 | 77 | 59 | 60 | 61 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
13Q LOSS MUTATED | 27 | 59 | 36 |
13Q LOSS WILD-TYPE | 82 | 65 | 101 |
P value = 0.0359 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
13Q LOSS MUTATED | 29 | 45 | 48 |
13Q LOSS WILD-TYPE | 59 | 122 | 67 |
P value = 0.00703 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
13Q LOSS MUTATED | 27 | 28 | 27 | 25 | 12 |
13Q LOSS WILD-TYPE | 34 | 69 | 41 | 44 | 57 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
13Q LOSS MUTATED | 26 | 11 | 37 | 36 | 9 |
13Q LOSS WILD-TYPE | 28 | 45 | 77 | 48 | 47 |
P value = 0.00264 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
13Q LOSS MUTATED | 26 | 28 | 14 | 53 |
13Q LOSS WILD-TYPE | 39 | 99 | 35 | 71 |
P value = 0.00441 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
13Q LOSS MUTATED | 19 | 35 | 15 | 46 | 6 |
13Q LOSS WILD-TYPE | 25 | 60 | 41 | 76 | 42 |
P value = 0.0197 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
13Q LOSS MUTATED | 35 | 37 | 28 | 16 |
13Q LOSS WILD-TYPE | 57 | 50 | 91 | 26 |
P value = 0.00157 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
13Q LOSS MUTATED | 22 | 33 | 40 | 15 | 6 |
13Q LOSS WILD-TYPE | 45 | 53 | 59 | 20 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
14Q LOSS MUTATED | 17 | 64 | 26 |
14Q LOSS WILD-TYPE | 92 | 60 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
14Q LOSS MUTATED | 32 | 18 | 25 | 21 | 10 |
14Q LOSS WILD-TYPE | 29 | 79 | 43 | 48 | 59 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
14Q LOSS MUTATED | 30 | 10 | 25 | 33 | 8 |
14Q LOSS WILD-TYPE | 24 | 46 | 89 | 51 | 48 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
14Q LOSS MUTATED | 40 | 29 | 20 | 13 |
14Q LOSS WILD-TYPE | 52 | 58 | 99 | 29 |
P value = 0.0155 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
14Q LOSS MUTATED | 26 | 23 | 33 | 13 | 7 |
14Q LOSS WILD-TYPE | 41 | 63 | 66 | 22 | 46 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
15Q LOSS MUTATED | 22 | 9 | 19 | 10 | 6 |
15Q LOSS WILD-TYPE | 39 | 88 | 49 | 59 | 63 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
15Q LOSS MUTATED | 20 | 5 | 12 | 22 | 7 |
15Q LOSS WILD-TYPE | 34 | 51 | 102 | 62 | 49 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
15Q LOSS MUTATED | 28 | 10 | 11 | 15 |
15Q LOSS WILD-TYPE | 64 | 77 | 108 | 27 |
P value = 0.0174 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
15Q LOSS MUTATED | 20 | 12 | 22 | 6 | 4 |
15Q LOSS WILD-TYPE | 47 | 74 | 77 | 29 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
16P LOSS MUTATED | 25 | 57 | 27 |
16P LOSS WILD-TYPE | 84 | 67 | 110 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
16P LOSS MUTATED | 27 | 32 | 50 |
16P LOSS WILD-TYPE | 61 | 135 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
16P LOSS MUTATED | 21 | 19 | 51 | 12 | 4 |
16P LOSS WILD-TYPE | 40 | 78 | 17 | 57 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
16P LOSS MUTATED | 22 | 13 | 25 | 44 | 3 |
16P LOSS WILD-TYPE | 32 | 43 | 89 | 40 | 53 |
P value = 0.0041 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
16P LOSS MUTATED | 13 | 34 | 25 | 36 |
16P LOSS WILD-TYPE | 52 | 93 | 24 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
16P LOSS MUTATED | 10 | 21 | 27 | 48 | 2 |
16P LOSS WILD-TYPE | 34 | 74 | 29 | 74 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
16P LOSS MUTATED | 39 | 22 | 16 | 27 |
16P LOSS WILD-TYPE | 53 | 65 | 103 | 15 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
16P LOSS MUTATED | 30 | 19 | 42 | 8 | 5 |
16P LOSS WILD-TYPE | 37 | 67 | 57 | 27 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
16Q LOSS MUTATED | 43 | 69 | 33 |
16Q LOSS WILD-TYPE | 66 | 55 | 104 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
16Q LOSS MUTATED | 25 | 51 | 69 |
16Q LOSS WILD-TYPE | 63 | 116 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
16Q LOSS MUTATED | 30 | 33 | 58 | 15 | 7 |
16Q LOSS WILD-TYPE | 31 | 64 | 10 | 54 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
16Q LOSS MUTATED | 23 | 16 | 46 | 53 | 5 |
16Q LOSS WILD-TYPE | 31 | 40 | 68 | 31 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
16Q LOSS MUTATED | 15 | 33 | 33 | 60 | 3 |
16Q LOSS WILD-TYPE | 29 | 62 | 23 | 62 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
16Q LOSS MUTATED | 53 | 31 | 28 | 27 |
16Q LOSS WILD-TYPE | 39 | 56 | 91 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
16Q LOSS MUTATED | 39 | 32 | 49 | 11 | 8 |
16Q LOSS WILD-TYPE | 28 | 54 | 50 | 24 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
17P LOSS MUTATED | 36 | 84 | 65 |
17P LOSS WILD-TYPE | 73 | 40 | 72 |
P value = 0.0214 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
17P LOSS MUTATED | 42 | 96 | 47 |
17P LOSS WILD-TYPE | 46 | 71 | 68 |
P value = 0.00509 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
17P LOSS MUTATED | 42 | 53 | 30 | 29 | 28 |
17P LOSS WILD-TYPE | 19 | 44 | 38 | 40 | 41 |
P value = 0.0223 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
17P LOSS MUTATED | 32 | 23 | 68 | 36 | 23 |
17P LOSS WILD-TYPE | 22 | 33 | 46 | 48 | 33 |
P value = 0.00355 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
17P LOSS MUTATED | 46 | 60 | 23 | 55 |
17P LOSS WILD-TYPE | 19 | 67 | 26 | 69 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 95 | 56 | 122 | 48 |
17P LOSS MUTATED | 34 | 54 | 23 | 52 | 21 |
17P LOSS WILD-TYPE | 10 | 41 | 33 | 70 | 27 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
17P LOSS MUTATED | 28 | 52 | 46 | 28 | 22 |
17P LOSS WILD-TYPE | 39 | 34 | 53 | 7 | 31 |
P value = 0.0492 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
18P LOSS MUTATED | 18 | 34 | 22 |
18P LOSS WILD-TYPE | 91 | 90 | 115 |
P value = 0.0109 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
18P LOSS MUTATED | 14 | 26 | 34 |
18P LOSS WILD-TYPE | 74 | 141 | 81 |
P value = 0.00318 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
18P LOSS MUTATED | 10 | 5 | 18 | 29 | 12 |
18P LOSS WILD-TYPE | 44 | 51 | 96 | 55 | 44 |
P value = 0.00376 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
18Q LOSS MUTATED | 19 | 39 | 21 |
18Q LOSS WILD-TYPE | 90 | 85 | 116 |
P value = 0.00359 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 88 | 167 | 115 |
18Q LOSS MUTATED | 13 | 29 | 37 |
18Q LOSS WILD-TYPE | 75 | 138 | 78 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
18Q LOSS MUTATED | 8 | 5 | 21 | 32 | 13 |
18Q LOSS WILD-TYPE | 46 | 51 | 93 | 52 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
19P LOSS MUTATED | 9 | 37 | 9 |
19P LOSS WILD-TYPE | 100 | 87 | 128 |
P value = 0.0335 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
19P LOSS MUTATED | 17 | 14 | 10 | 7 | 6 |
19P LOSS WILD-TYPE | 44 | 83 | 58 | 62 | 63 |
P value = 0.00327 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 67 | 86 | 99 | 35 | 53 |
19P LOSS MUTATED | 17 | 12 | 10 | 10 | 3 |
19P LOSS WILD-TYPE | 50 | 74 | 89 | 25 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
19Q LOSS MUTATED | 6 | 29 | 4 |
19Q LOSS WILD-TYPE | 103 | 95 | 133 |
P value = 0.0308 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 127 | 49 | 124 |
19Q LOSS MUTATED | 12 | 16 | 3 | 7 |
19Q LOSS WILD-TYPE | 53 | 111 | 46 | 117 |
P value = 0.0129 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
20Q LOSS MUTATED | 8 | 3 | 1 | 0 |
20Q LOSS WILD-TYPE | 84 | 84 | 118 | 42 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
21Q LOSS MUTATED | 37 | 48 | 25 |
21Q LOSS WILD-TYPE | 72 | 76 | 112 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
21Q LOSS MUTATED | 32 | 17 | 21 | 18 | 19 |
21Q LOSS WILD-TYPE | 29 | 80 | 47 | 51 | 50 |
P value = 0.0346 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
22Q LOSS MUTATED | 12 | 28 | 30 |
22Q LOSS WILD-TYPE | 97 | 96 | 107 |
P value = 0.00207 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 61 | 97 | 68 | 69 | 69 |
22Q LOSS MUTATED | 23 | 19 | 8 | 12 | 8 |
22Q LOSS WILD-TYPE | 38 | 78 | 60 | 57 | 61 |
P value = 0.0327 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
XP LOSS MUTATED | 22 | 42 | 30 |
XP LOSS WILD-TYPE | 87 | 82 | 107 |
P value = 0.0223 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 54 | 56 | 114 | 84 | 56 |
XP LOSS MUTATED | 14 | 10 | 39 | 13 | 17 |
XP LOSS WILD-TYPE | 40 | 46 | 75 | 71 | 39 |
P value = 0.00434 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 87 | 119 | 42 |
XP LOSS MUTATED | 23 | 18 | 42 | 4 |
XP LOSS WILD-TYPE | 69 | 69 | 77 | 38 |
P value = 0.0123 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 124 | 137 |
XQ LOSS MUTATED | 14 | 34 | 22 |
XQ LOSS WILD-TYPE | 95 | 90 | 115 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/19782291/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LIHC-TP/20139336/LIHC-TP.transferedmergedcluster.txt
-
Number of patients = 370
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 8
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.