This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 20 genes and 8 molecular subtypes across 198 patients, 36 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
CTNNB1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
RB1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
-
ARID1A mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.
-
AXIN1 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
BAP1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
ALB mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
-
TSC2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
APOB mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
PRKDC mutation correlated to 'MIRSEQ_CNMF'.
-
HNF1A mutation correlated to 'MIRSEQ_MATURE_CNMF'.
-
GNAS mutation correlated to 'MRNASEQ_CNMF'.
-
HIST1H1C mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
CTNNB1 | 51 (26%) | 147 |
0.0387 (0.194) |
0.00093 (0.0135) |
1e-05 (0.00032) |
1e-05 (0.00032) |
0.0451 (0.205) |
1e-05 (0.00032) |
0.0005 (0.00889) |
1e-05 (0.00032) |
TP53 | 62 (31%) | 136 |
0.00615 (0.0579) |
0.927 (0.957) |
1e-05 (0.00032) |
0.0215 (0.128) |
0.0171 (0.126) |
0.00117 (0.0156) |
0.232 (0.494) |
0.0247 (0.141) |
BAP1 | 11 (6%) | 187 |
0.789 (0.903) |
0.00392 (0.0482) |
0.00038 (0.0076) |
0.00012 (0.00274) |
2e-05 (0.000533) |
0.0532 (0.23) |
0.0164 (0.126) |
0.0434 (0.204) |
AXIN1 | 9 (5%) | 189 |
0.279 (0.51) |
0.476 (0.716) |
0.0107 (0.0925) |
0.187 (0.434) |
0.00471 (0.0538) |
0.458 (0.704) |
0.00588 (0.0579) |
0.695 (0.856) |
RB1 | 15 (8%) | 183 |
0.728 (0.873) |
0.00085 (0.0135) |
0.00565 (0.0579) |
0.31 (0.528) |
0.214 (0.476) |
0.391 (0.632) |
0.213 (0.476) |
0.304 (0.523) |
ARID1A | 17 (9%) | 181 |
0.845 (0.92) |
0.164 (0.404) |
0.1 (0.336) |
0.046 (0.205) |
0.124 (0.378) |
0.628 (0.811) |
0.0174 (0.126) |
0.656 (0.832) |
ALB | 18 (9%) | 180 |
0.041 (0.199) |
0.021 (0.128) |
0.406 (0.649) |
0.575 (0.78) |
0.821 (0.906) |
0.843 (0.92) |
0.504 (0.722) |
0.251 (0.508) |
TSC2 | 9 (5%) | 189 |
0.906 (0.947) |
0.0187 (0.128) |
0.101 (0.336) |
0.0199 (0.128) |
0.765 (0.9) |
0.566 (0.774) |
0.786 (0.903) |
0.11 (0.347) |
APOB | 25 (13%) | 173 |
0.96 (0.979) |
0.893 (0.939) |
0.139 (0.383) |
0.133 (0.379) |
0.159 (0.404) |
0.073 (0.285) |
0.297 (0.52) |
0.0256 (0.141) |
PRKDC | 11 (6%) | 187 |
0.264 (0.509) |
0.282 (0.51) |
0.502 (0.722) |
0.676 (0.845) |
0.0286 (0.153) |
0.287 (0.51) |
0.275 (0.51) |
0.103 (0.336) |
HNF1A | 8 (4%) | 190 |
0.165 (0.404) |
0.664 (0.837) |
0.0724 (0.285) |
0.53 (0.744) |
0.0953 (0.336) |
0.152 (0.4) |
0.011 (0.0925) |
0.284 (0.51) |
GNAS | 7 (4%) | 191 |
0.889 (0.939) |
0.238 (0.494) |
0.0305 (0.158) |
0.17 (0.406) |
0.0766 (0.292) |
0.45 (0.699) |
0.554 (0.764) |
0.724 (0.873) |
HIST1H1C | 5 (3%) | 193 |
0.722 (0.873) |
0.737 (0.873) |
0.471 (0.716) |
0.349 (0.588) |
0.802 (0.904) |
0.248 (0.508) |
0.639 (0.818) |
0.0207 (0.128) |
IL6ST | 7 (4%) | 191 |
0.491 (0.721) |
0.299 (0.52) |
0.167 (0.404) |
0.137 (0.383) |
0.439 (0.688) |
0.105 (0.338) |
0.479 (0.716) |
1 (1.00) |
PTEN | 7 (4%) | 191 |
0.489 (0.721) |
0.264 (0.509) |
0.372 (0.619) |
0.505 (0.722) |
0.859 (0.929) |
0.276 (0.51) |
0.784 (0.903) |
0.285 (0.51) |
EEF1A1 | 5 (3%) | 193 |
0.0557 (0.234) |
0.734 (0.873) |
0.254 (0.508) |
0.132 (0.379) |
0.611 (0.809) |
0.26 (0.509) |
0.238 (0.494) |
0.617 (0.809) |
KIF19 | 10 (5%) | 188 |
0.918 (0.953) |
0.103 (0.336) |
0.234 (0.494) |
0.236 (0.494) |
0.382 (0.63) |
0.81 (0.906) |
0.153 (0.4) |
0.101 (0.336) |
THADA | 6 (3%) | 192 |
0.142 (0.384) |
0.131 (0.379) |
0.0569 (0.234) |
0.202 (0.461) |
0.889 (0.939) |
0.622 (0.809) |
0.125 (0.378) |
0.547 (0.761) |
F5 | 4 (2%) | 194 |
0.82 (0.906) |
0.179 (0.421) |
0.799 (0.904) |
0.619 (0.809) |
0.102 (0.336) |
0.937 (0.962) |
||
MLL4 | 10 (5%) | 188 |
0.415 (0.657) |
0.163 (0.404) |
0.516 (0.731) |
0.882 (0.939) |
0.622 (0.809) |
0.391 (0.632) |
0.688 (0.853) |
0.79 (0.903) |
P value = 0.00615 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
TP53 MUTATED | 9 | 29 | 23 |
TP53 WILD-TYPE | 37 | 33 | 62 |
P value = 0.927 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
TP53 MUTATED | 18 | 27 | 17 |
TP53 WILD-TYPE | 39 | 56 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
TP53 MUTATED | 30 | 16 | 3 | 5 | 7 |
TP53 WILD-TYPE | 13 | 39 | 26 | 31 | 25 |
P value = 0.0215 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
TP53 MUTATED | 18 | 10 | 20 | 6 | 7 |
TP53 WILD-TYPE | 16 | 19 | 47 | 30 | 22 |
P value = 0.0171 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
TP53 MUTATED | 16 | 24 | 11 | 10 |
TP53 WILD-TYPE | 22 | 44 | 16 | 50 |
P value = 0.00117 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
TP53 MUTATED | 14 | 24 | 6 | 15 | 2 |
TP53 WILD-TYPE | 10 | 34 | 18 | 51 | 19 |
P value = 0.232 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
TP53 MUTATED | 22 | 10 | 17 | 10 |
TP53 WILD-TYPE | 35 | 31 | 39 | 11 |
P value = 0.0247 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
TP53 MUTATED | 12 | 23 | 11 | 10 | 3 |
TP53 WILD-TYPE | 20 | 30 | 39 | 10 | 17 |
P value = 0.0387 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
CTNNB1 MUTATED | 19 | 13 | 19 |
CTNNB1 WILD-TYPE | 27 | 49 | 66 |
P value = 0.00093 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
CTNNB1 MUTATED | 9 | 33 | 9 |
CTNNB1 WILD-TYPE | 48 | 50 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
CTNNB1 MUTATED | 9 | 8 | 1 | 5 | 28 |
CTNNB1 WILD-TYPE | 34 | 47 | 28 | 31 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
CTNNB1 MUTATED | 3 | 7 | 9 | 7 | 25 |
CTNNB1 WILD-TYPE | 31 | 22 | 58 | 29 | 4 |
P value = 0.0451 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
CTNNB1 MUTATED | 9 | 25 | 7 | 9 |
CTNNB1 WILD-TYPE | 29 | 43 | 20 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
CTNNB1 MUTATED | 8 | 11 | 2 | 11 | 18 |
CTNNB1 WILD-TYPE | 16 | 47 | 22 | 55 | 3 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
CTNNB1 MUTATED | 8 | 5 | 25 | 5 |
CTNNB1 WILD-TYPE | 49 | 36 | 31 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
CTNNB1 MUTATED | 3 | 10 | 7 | 7 | 16 |
CTNNB1 WILD-TYPE | 29 | 43 | 43 | 13 | 4 |
P value = 0.728 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
RB1 MUTATED | 3 | 6 | 5 |
RB1 WILD-TYPE | 43 | 56 | 80 |
P value = 0.00085 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
RB1 MUTATED | 1 | 3 | 11 |
RB1 WILD-TYPE | 56 | 80 | 47 |
P value = 0.00565 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
RB1 MUTATED | 3 | 6 | 6 | 0 | 0 |
RB1 WILD-TYPE | 40 | 49 | 23 | 36 | 32 |
P value = 0.31 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
RB1 MUTATED | 3 | 1 | 8 | 3 | 0 |
RB1 WILD-TYPE | 31 | 28 | 59 | 33 | 29 |
P value = 0.214 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
RB1 MUTATED | 0 | 6 | 2 | 6 |
RB1 WILD-TYPE | 38 | 62 | 25 | 54 |
P value = 0.391 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
RB1 MUTATED | 1 | 3 | 2 | 8 | 0 |
RB1 WILD-TYPE | 23 | 55 | 22 | 58 | 21 |
P value = 0.213 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
RB1 MUTATED | 6 | 4 | 1 | 1 |
RB1 WILD-TYPE | 51 | 37 | 55 | 20 |
P value = 0.304 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
RB1 MUTATED | 5 | 3 | 3 | 1 | 0 |
RB1 WILD-TYPE | 27 | 50 | 47 | 19 | 20 |
P value = 0.845 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
ARID1A MUTATED | 4 | 6 | 6 |
ARID1A WILD-TYPE | 42 | 56 | 79 |
P value = 0.164 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
ARID1A MUTATED | 5 | 4 | 8 |
ARID1A WILD-TYPE | 52 | 79 | 50 |
P value = 0.1 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
ARID1A MUTATED | 3 | 2 | 6 | 2 | 4 |
ARID1A WILD-TYPE | 40 | 53 | 23 | 34 | 28 |
P value = 0.046 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
ARID1A MUTATED | 2 | 2 | 2 | 7 | 4 |
ARID1A WILD-TYPE | 32 | 27 | 65 | 29 | 25 |
P value = 0.124 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
ARID1A MUTATED | 4 | 6 | 5 | 2 |
ARID1A WILD-TYPE | 34 | 62 | 22 | 58 |
P value = 0.628 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
ARID1A MUTATED | 3 | 3 | 3 | 7 | 1 |
ARID1A WILD-TYPE | 21 | 55 | 21 | 59 | 20 |
P value = 0.0174 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
ARID1A MUTATED | 5 | 3 | 2 | 6 |
ARID1A WILD-TYPE | 52 | 38 | 54 | 15 |
P value = 0.656 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
ARID1A MUTATED | 3 | 3 | 6 | 3 | 1 |
ARID1A WILD-TYPE | 29 | 50 | 44 | 17 | 19 |
P value = 0.279 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
AXIN1 MUTATED | 2 | 5 | 2 |
AXIN1 WILD-TYPE | 44 | 57 | 83 |
P value = 0.476 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
AXIN1 MUTATED | 1 | 4 | 4 |
AXIN1 WILD-TYPE | 56 | 79 | 54 |
P value = 0.0107 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
AXIN1 MUTATED | 1 | 3 | 5 | 0 | 0 |
AXIN1 WILD-TYPE | 42 | 52 | 24 | 36 | 32 |
P value = 0.187 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
AXIN1 MUTATED | 1 | 0 | 4 | 4 | 0 |
AXIN1 WILD-TYPE | 33 | 29 | 63 | 32 | 29 |
P value = 0.00471 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
AXIN1 MUTATED | 0 | 4 | 4 | 0 |
AXIN1 WILD-TYPE | 38 | 64 | 23 | 60 |
P value = 0.458 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
AXIN1 MUTATED | 1 | 1 | 2 | 4 | 0 |
AXIN1 WILD-TYPE | 23 | 57 | 22 | 62 | 21 |
P value = 0.00588 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
AXIN1 MUTATED | 1 | 0 | 2 | 4 |
AXIN1 WILD-TYPE | 56 | 41 | 54 | 17 |
P value = 0.695 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
AXIN1 MUTATED | 0 | 2 | 3 | 1 | 1 |
AXIN1 WILD-TYPE | 32 | 51 | 47 | 19 | 19 |
P value = 0.789 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
BAP1 MUTATED | 2 | 3 | 6 |
BAP1 WILD-TYPE | 44 | 59 | 79 |
P value = 0.00392 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
BAP1 MUTATED | 5 | 0 | 6 |
BAP1 WILD-TYPE | 52 | 83 | 52 |
P value = 0.00038 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
BAP1 MUTATED | 1 | 0 | 4 | 6 | 0 |
BAP1 WILD-TYPE | 42 | 55 | 25 | 30 | 32 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
BAP1 MUTATED | 5 | 0 | 0 | 6 | 0 |
BAP1 WILD-TYPE | 29 | 29 | 67 | 30 | 29 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
BAP1 MUTATED | 0 | 0 | 0 | 11 |
BAP1 WILD-TYPE | 38 | 68 | 27 | 49 |
P value = 0.0532 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
BAP1 MUTATED | 0 | 1 | 2 | 8 | 0 |
BAP1 WILD-TYPE | 24 | 57 | 22 | 58 | 21 |
P value = 0.0164 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
BAP1 MUTATED | 4 | 6 | 0 | 1 |
BAP1 WILD-TYPE | 53 | 35 | 56 | 20 |
P value = 0.0434 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
BAP1 MUTATED | 1 | 2 | 8 | 0 | 0 |
BAP1 WILD-TYPE | 31 | 51 | 42 | 20 | 20 |
P value = 0.041 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
ALB MUTATED | 8 | 2 | 7 |
ALB WILD-TYPE | 38 | 60 | 78 |
P value = 0.021 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
ALB MUTATED | 5 | 12 | 1 |
ALB WILD-TYPE | 52 | 71 | 57 |
P value = 0.406 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
ALB MUTATED | 4 | 6 | 0 | 4 | 3 |
ALB WILD-TYPE | 39 | 49 | 29 | 32 | 29 |
P value = 0.575 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
ALB MUTATED | 3 | 4 | 6 | 1 | 3 |
ALB WILD-TYPE | 31 | 25 | 61 | 35 | 26 |
P value = 0.821 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
ALB MUTATED | 4 | 6 | 1 | 5 |
ALB WILD-TYPE | 34 | 62 | 26 | 55 |
P value = 0.843 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
ALB MUTATED | 3 | 5 | 2 | 4 | 2 |
ALB WILD-TYPE | 21 | 53 | 22 | 62 | 19 |
P value = 0.504 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
ALB MUTATED | 4 | 4 | 6 | 0 |
ALB WILD-TYPE | 53 | 37 | 50 | 21 |
P value = 0.251 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
ALB MUTATED | 1 | 5 | 2 | 3 | 3 |
ALB WILD-TYPE | 31 | 48 | 48 | 17 | 17 |
P value = 0.906 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
TSC2 MUTATED | 2 | 2 | 5 |
TSC2 WILD-TYPE | 44 | 60 | 80 |
P value = 0.0187 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
TSC2 MUTATED | 6 | 3 | 0 |
TSC2 WILD-TYPE | 51 | 80 | 58 |
P value = 0.101 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
TSC2 MUTATED | 5 | 1 | 2 | 1 | 0 |
TSC2 WILD-TYPE | 38 | 54 | 27 | 35 | 32 |
P value = 0.0199 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
TSC2 MUTATED | 5 | 0 | 4 | 0 | 0 |
TSC2 WILD-TYPE | 29 | 29 | 63 | 36 | 29 |
P value = 0.765 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
TSC2 MUTATED | 2 | 4 | 0 | 3 |
TSC2 WILD-TYPE | 36 | 64 | 27 | 57 |
P value = 0.566 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
TSC2 MUTATED | 2 | 2 | 2 | 2 | 1 |
TSC2 WILD-TYPE | 22 | 56 | 22 | 64 | 20 |
P value = 0.786 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
TSC2 MUTATED | 4 | 2 | 3 | 0 |
TSC2 WILD-TYPE | 53 | 39 | 53 | 21 |
P value = 0.11 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
TSC2 MUTATED | 4 | 1 | 1 | 1 | 2 |
TSC2 WILD-TYPE | 28 | 52 | 49 | 19 | 18 |
P value = 0.491 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
IL6ST MUTATED | 0 | 2 | 4 |
IL6ST WILD-TYPE | 46 | 60 | 81 |
P value = 0.299 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
IL6ST MUTATED | 3 | 1 | 3 |
IL6ST WILD-TYPE | 54 | 82 | 55 |
P value = 0.167 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
IL6ST MUTATED | 1 | 1 | 2 | 0 | 3 |
IL6ST WILD-TYPE | 42 | 54 | 27 | 36 | 29 |
P value = 0.137 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
IL6ST MUTATED | 0 | 1 | 1 | 2 | 3 |
IL6ST WILD-TYPE | 34 | 28 | 66 | 34 | 26 |
P value = 0.439 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
IL6ST MUTATED | 0 | 3 | 2 | 2 |
IL6ST WILD-TYPE | 38 | 65 | 25 | 58 |
P value = 0.105 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
IL6ST MUTATED | 0 | 0 | 1 | 4 | 2 |
IL6ST WILD-TYPE | 24 | 58 | 23 | 62 | 19 |
P value = 0.479 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
IL6ST MUTATED | 2 | 0 | 3 | 1 |
IL6ST WILD-TYPE | 55 | 41 | 53 | 20 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
IL6ST MUTATED | 1 | 2 | 2 | 0 | 1 |
IL6ST WILD-TYPE | 31 | 51 | 48 | 20 | 19 |
P value = 0.96 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
APOB MUTATED | 6 | 7 | 10 |
APOB WILD-TYPE | 40 | 55 | 75 |
P value = 0.893 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
APOB MUTATED | 6 | 11 | 8 |
APOB WILD-TYPE | 51 | 72 | 50 |
P value = 0.139 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
APOB MUTATED | 3 | 7 | 4 | 2 | 8 |
APOB WILD-TYPE | 40 | 48 | 25 | 34 | 24 |
P value = 0.133 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
APOB MUTATED | 4 | 3 | 7 | 2 | 8 |
APOB WILD-TYPE | 30 | 26 | 60 | 34 | 21 |
P value = 0.159 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
APOB MUTATED | 9 | 6 | 4 | 6 |
APOB WILD-TYPE | 29 | 62 | 23 | 54 |
P value = 0.073 (Fisher's exact test), Q value = 0.28
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
APOB MUTATED | 3 | 8 | 0 | 8 | 6 |
APOB WILD-TYPE | 21 | 50 | 24 | 58 | 15 |
P value = 0.297 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
APOB MUTATED | 6 | 4 | 11 | 1 |
APOB WILD-TYPE | 51 | 37 | 45 | 20 |
P value = 0.0256 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
APOB MUTATED | 1 | 6 | 5 | 3 | 7 |
APOB WILD-TYPE | 31 | 47 | 45 | 17 | 13 |
P value = 0.489 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
PTEN MUTATED | 0 | 2 | 4 |
PTEN WILD-TYPE | 46 | 60 | 81 |
P value = 0.264 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
PTEN MUTATED | 0 | 4 | 3 |
PTEN WILD-TYPE | 57 | 79 | 55 |
P value = 0.372 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
PTEN MUTATED | 1 | 4 | 0 | 0 | 1 |
PTEN WILD-TYPE | 42 | 51 | 29 | 36 | 31 |
P value = 0.505 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
PTEN MUTATED | 1 | 0 | 4 | 0 | 1 |
PTEN WILD-TYPE | 33 | 29 | 63 | 36 | 28 |
P value = 0.859 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
PTEN MUTATED | 1 | 3 | 0 | 3 |
PTEN WILD-TYPE | 37 | 65 | 27 | 57 |
P value = 0.276 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
PTEN MUTATED | 0 | 5 | 0 | 2 | 0 |
PTEN WILD-TYPE | 24 | 53 | 24 | 64 | 21 |
P value = 0.784 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
PTEN MUTATED | 3 | 1 | 3 | 0 |
PTEN WILD-TYPE | 54 | 40 | 53 | 21 |
P value = 0.285 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
PTEN MUTATED | 1 | 5 | 1 | 0 | 0 |
PTEN WILD-TYPE | 31 | 48 | 49 | 20 | 20 |
P value = 0.0557 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
EEF1A1 MUTATED | 0 | 0 | 5 |
EEF1A1 WILD-TYPE | 46 | 62 | 80 |
P value = 0.734 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
EEF1A1 MUTATED | 1 | 3 | 1 |
EEF1A1 WILD-TYPE | 56 | 80 | 57 |
P value = 0.254 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
EEF1A1 MUTATED | 0 | 1 | 0 | 2 | 2 |
EEF1A1 WILD-TYPE | 43 | 54 | 29 | 34 | 30 |
P value = 0.132 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
EEF1A1 MUTATED | 0 | 2 | 1 | 0 | 2 |
EEF1A1 WILD-TYPE | 34 | 27 | 66 | 36 | 27 |
P value = 0.611 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
EEF1A1 MUTATED | 1 | 1 | 0 | 3 |
EEF1A1 WILD-TYPE | 37 | 67 | 27 | 57 |
P value = 0.26 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
EEF1A1 MUTATED | 1 | 2 | 1 | 0 | 1 |
EEF1A1 WILD-TYPE | 23 | 56 | 23 | 66 | 20 |
P value = 0.238 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
EEF1A1 MUTATED | 0 | 2 | 3 | 0 |
EEF1A1 WILD-TYPE | 57 | 39 | 53 | 21 |
P value = 0.617 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
EEF1A1 MUTATED | 0 | 2 | 1 | 1 | 1 |
EEF1A1 WILD-TYPE | 32 | 51 | 49 | 19 | 19 |
P value = 0.918 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
KIF19 MUTATED | 2 | 4 | 4 |
KIF19 WILD-TYPE | 44 | 58 | 81 |
P value = 0.103 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
KIF19 MUTATED | 0 | 6 | 4 |
KIF19 WILD-TYPE | 57 | 77 | 54 |
P value = 0.234 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
KIF19 MUTATED | 4 | 3 | 0 | 0 | 2 |
KIF19 WILD-TYPE | 39 | 52 | 29 | 36 | 30 |
P value = 0.236 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
KIF19 MUTATED | 3 | 0 | 4 | 0 | 2 |
KIF19 WILD-TYPE | 31 | 29 | 63 | 36 | 27 |
P value = 0.382 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
KIF19 MUTATED | 1 | 6 | 0 | 3 |
KIF19 WILD-TYPE | 37 | 62 | 27 | 57 |
P value = 0.81 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
KIF19 MUTATED | 2 | 3 | 0 | 4 | 1 |
KIF19 WILD-TYPE | 22 | 55 | 24 | 62 | 20 |
P value = 0.153 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
KIF19 MUTATED | 5 | 0 | 4 | 0 |
KIF19 WILD-TYPE | 52 | 41 | 52 | 21 |
P value = 0.101 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
KIF19 MUTATED | 4 | 3 | 0 | 1 | 1 |
KIF19 WILD-TYPE | 28 | 50 | 50 | 19 | 19 |
P value = 0.142 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
THADA MUTATED | 0 | 4 | 2 |
THADA WILD-TYPE | 46 | 58 | 83 |
P value = 0.131 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
THADA MUTATED | 0 | 5 | 1 |
THADA WILD-TYPE | 57 | 78 | 57 |
P value = 0.0569 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
THADA MUTATED | 0 | 5 | 0 | 1 | 0 |
THADA WILD-TYPE | 43 | 50 | 29 | 35 | 32 |
P value = 0.202 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
THADA MUTATED | 1 | 0 | 5 | 0 | 0 |
THADA WILD-TYPE | 33 | 29 | 62 | 36 | 29 |
P value = 0.889 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
THADA MUTATED | 1 | 3 | 1 | 1 |
THADA WILD-TYPE | 37 | 65 | 26 | 59 |
P value = 0.622 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
THADA MUTATED | 1 | 3 | 1 | 1 | 0 |
THADA WILD-TYPE | 23 | 55 | 23 | 65 | 21 |
P value = 0.125 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
THADA MUTATED | 0 | 2 | 4 | 0 |
THADA WILD-TYPE | 57 | 39 | 52 | 21 |
P value = 0.547 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
THADA MUTATED | 0 | 3 | 1 | 1 | 1 |
THADA WILD-TYPE | 32 | 50 | 49 | 19 | 19 |
P value = 0.264 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
PRKDC MUTATED | 4 | 1 | 5 |
PRKDC WILD-TYPE | 42 | 61 | 80 |
P value = 0.282 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
PRKDC MUTATED | 1 | 7 | 3 |
PRKDC WILD-TYPE | 56 | 76 | 55 |
P value = 0.502 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
PRKDC MUTATED | 3 | 4 | 0 | 1 | 3 |
PRKDC WILD-TYPE | 40 | 51 | 29 | 35 | 29 |
P value = 0.676 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
PRKDC MUTATED | 1 | 1 | 5 | 1 | 3 |
PRKDC WILD-TYPE | 33 | 28 | 62 | 35 | 26 |
P value = 0.0286 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
PRKDC MUTATED | 0 | 7 | 3 | 1 |
PRKDC WILD-TYPE | 38 | 61 | 24 | 59 |
P value = 0.287 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
PRKDC MUTATED | 0 | 3 | 2 | 3 | 3 |
PRKDC WILD-TYPE | 24 | 55 | 22 | 63 | 18 |
P value = 0.275 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
PRKDC MUTATED | 3 | 1 | 6 | 0 |
PRKDC WILD-TYPE | 54 | 40 | 50 | 21 |
P value = 0.103 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
PRKDC MUTATED | 1 | 2 | 3 | 0 | 4 |
PRKDC WILD-TYPE | 31 | 51 | 47 | 20 | 16 |
P value = 0.165 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
HNF1A MUTATED | 0 | 2 | 6 |
HNF1A WILD-TYPE | 46 | 60 | 79 |
P value = 0.664 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
HNF1A MUTATED | 3 | 4 | 1 |
HNF1A WILD-TYPE | 54 | 79 | 57 |
P value = 0.0724 (Fisher's exact test), Q value = 0.28
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
HNF1A MUTATED | 1 | 6 | 0 | 0 | 1 |
HNF1A WILD-TYPE | 42 | 49 | 29 | 36 | 31 |
P value = 0.53 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
HNF1A MUTATED | 1 | 1 | 5 | 0 | 1 |
HNF1A WILD-TYPE | 33 | 28 | 62 | 36 | 28 |
P value = 0.0953 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
HNF1A MUTATED | 1 | 5 | 2 | 0 |
HNF1A WILD-TYPE | 37 | 63 | 25 | 60 |
P value = 0.152 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
HNF1A MUTATED | 0 | 6 | 0 | 2 | 0 |
HNF1A WILD-TYPE | 24 | 52 | 24 | 64 | 21 |
P value = 0.011 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
HNF1A MUTATED | 0 | 0 | 5 | 2 |
HNF1A WILD-TYPE | 57 | 41 | 51 | 19 |
P value = 0.284 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
HNF1A MUTATED | 1 | 5 | 1 | 0 | 0 |
HNF1A WILD-TYPE | 31 | 48 | 49 | 20 | 20 |
P value = 0.82 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
F5 MUTATED | 1 | 2 | 1 |
F5 WILD-TYPE | 45 | 60 | 84 |
P value = 0.179 (Fisher's exact test), Q value = 0.42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
F5 MUTATED | 0 | 1 | 3 |
F5 WILD-TYPE | 57 | 82 | 55 |
P value = 0.799 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
F5 MUTATED | 1 | 2 | 1 | 0 | 0 |
F5 WILD-TYPE | 42 | 53 | 28 | 36 | 32 |
P value = 0.619 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
F5 MUTATED | 0 | 0 | 3 | 1 | 0 |
F5 WILD-TYPE | 34 | 29 | 64 | 35 | 29 |
P value = 0.102 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
F5 MUTATED | 0 | 4 | 0 | 0 |
F5 WILD-TYPE | 38 | 64 | 27 | 60 |
P value = 0.937 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
F5 MUTATED | 0 | 1 | 1 | 2 | 0 |
F5 WILD-TYPE | 24 | 57 | 23 | 64 | 21 |
P value = 0.889 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
GNAS MUTATED | 1 | 2 | 4 |
GNAS WILD-TYPE | 45 | 60 | 81 |
P value = 0.238 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
GNAS MUTATED | 2 | 1 | 4 |
GNAS WILD-TYPE | 55 | 82 | 54 |
P value = 0.0305 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
GNAS MUTATED | 0 | 1 | 2 | 4 | 0 |
GNAS WILD-TYPE | 43 | 54 | 27 | 32 | 32 |
P value = 0.17 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
GNAS MUTATED | 1 | 3 | 1 | 2 | 0 |
GNAS WILD-TYPE | 33 | 26 | 66 | 34 | 29 |
P value = 0.0766 (Fisher's exact test), Q value = 0.29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
GNAS MUTATED | 0 | 1 | 0 | 5 |
GNAS WILD-TYPE | 38 | 67 | 27 | 55 |
P value = 0.45 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
GNAS MUTATED | 0 | 1 | 2 | 3 | 0 |
GNAS WILD-TYPE | 24 | 57 | 22 | 63 | 21 |
P value = 0.554 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
GNAS MUTATED | 2 | 3 | 1 | 0 |
GNAS WILD-TYPE | 55 | 38 | 55 | 21 |
P value = 0.724 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
GNAS MUTATED | 1 | 1 | 3 | 0 | 1 |
GNAS WILD-TYPE | 31 | 52 | 47 | 20 | 19 |
P value = 0.415 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
MLL4 MUTATED | 4 | 3 | 3 |
MLL4 WILD-TYPE | 42 | 59 | 82 |
P value = 0.163 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
MLL4 MUTATED | 2 | 7 | 1 |
MLL4 WILD-TYPE | 55 | 76 | 57 |
P value = 0.516 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
MLL4 MUTATED | 4 | 2 | 0 | 2 | 2 |
MLL4 WILD-TYPE | 39 | 53 | 29 | 34 | 30 |
P value = 0.882 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
MLL4 MUTATED | 2 | 2 | 3 | 1 | 2 |
MLL4 WILD-TYPE | 32 | 27 | 64 | 35 | 27 |
P value = 0.622 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
MLL4 MUTATED | 1 | 5 | 2 | 2 |
MLL4 WILD-TYPE | 37 | 63 | 25 | 58 |
P value = 0.391 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
MLL4 MUTATED | 2 | 2 | 2 | 2 | 2 |
MLL4 WILD-TYPE | 22 | 56 | 22 | 64 | 19 |
P value = 0.688 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
MLL4 MUTATED | 2 | 2 | 3 | 2 |
MLL4 WILD-TYPE | 55 | 39 | 53 | 19 |
P value = 0.79 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
MLL4 MUTATED | 2 | 2 | 2 | 2 | 1 |
MLL4 WILD-TYPE | 30 | 51 | 48 | 18 | 19 |
P value = 0.722 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 62 | 85 |
HIST1H1C MUTATED | 2 | 1 | 2 |
HIST1H1C WILD-TYPE | 44 | 61 | 83 |
P value = 0.737 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 57 | 83 | 58 |
HIST1H1C MUTATED | 1 | 3 | 1 |
HIST1H1C WILD-TYPE | 56 | 80 | 57 |
P value = 0.471 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 43 | 55 | 29 | 36 | 32 |
HIST1H1C MUTATED | 0 | 1 | 1 | 1 | 2 |
HIST1H1C WILD-TYPE | 43 | 54 | 28 | 35 | 30 |
P value = 0.349 (Fisher's exact test), Q value = 0.59
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 29 | 67 | 36 | 29 |
HIST1H1C MUTATED | 1 | 1 | 1 | 0 | 2 |
HIST1H1C WILD-TYPE | 33 | 28 | 66 | 36 | 27 |
P value = 0.802 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 68 | 27 | 60 |
HIST1H1C MUTATED | 1 | 3 | 0 | 1 |
HIST1H1C WILD-TYPE | 37 | 65 | 27 | 59 |
P value = 0.248 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 24 | 58 | 24 | 66 | 21 |
HIST1H1C MUTATED | 0 | 1 | 1 | 1 | 2 |
HIST1H1C WILD-TYPE | 24 | 57 | 23 | 65 | 19 |
P value = 0.639 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 41 | 56 | 21 |
HIST1H1C MUTATED | 1 | 1 | 3 | 0 |
HIST1H1C WILD-TYPE | 56 | 40 | 53 | 21 |
P value = 0.0207 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 53 | 50 | 20 | 20 |
HIST1H1C MUTATED | 1 | 0 | 1 | 0 | 3 |
HIST1H1C WILD-TYPE | 31 | 53 | 49 | 20 | 17 |
-
Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
-
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LIHC-TP/19897750/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LIHC-TP/20139336/LIHC-TP.transferedmergedcluster.txt
-
Number of patients = 198
-
Number of significantly mutated genes = 20
-
Number of Molecular subtypes = 8
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.