This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 81 arm-level events and 10 molecular subtypes across 184 patients, 258 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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4p gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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5q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF'.
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6q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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8q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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9p gain cnv correlated to 'CN_CNMF'.
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9q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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10q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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11p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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12q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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13q gain cnv correlated to 'CN_CNMF'.
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14q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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18q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xp gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF'.
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2p loss cnv correlated to 'CN_CNMF'.
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2q loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF'.
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3q loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF'.
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5q loss cnv correlated to 'CN_CNMF'.
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6p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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14q loss cnv correlated to 'METHLYATION_CNMF'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
6q loss | 83 (45%) | 101 |
1e-05 (0.000279) |
1e-05 (0.000279) |
0.039 (0.133) |
0.56 (0.733) |
0.00024 (0.00389) |
0.00045 (0.00579) |
0.00134 (0.0121) |
1e-05 (0.000279) |
1e-05 (0.000279) |
1e-05 (0.000279) |
9p loss | 75 (41%) | 109 |
1e-05 (0.000279) |
0.00663 (0.0398) |
0.107 (0.263) |
0.175 (0.353) |
0.0031 (0.0224) |
0.0395 (0.133) |
0.0168 (0.0747) |
0.0143 (0.0678) |
0.00844 (0.0462) |
0.00734 (0.0428) |
17p loss | 80 (43%) | 104 |
1e-05 (0.000279) |
1e-05 (0.000279) |
0.061 (0.18) |
0.153 (0.325) |
1e-05 (0.000279) |
1e-05 (0.000279) |
1e-05 (0.000279) |
4e-05 (0.000853) |
1e-05 (0.000279) |
2e-05 (0.000506) |
18q loss | 106 (58%) | 78 |
1e-05 (0.000279) |
0.00034 (0.00475) |
0.775 (0.89) |
0.505 (0.685) |
0.00192 (0.016) |
0.00521 (0.034) |
0.0147 (0.0679) |
0.00321 (0.0228) |
0.0485 (0.152) |
6e-05 (0.00113) |
1q gain | 50 (27%) | 134 |
0.00759 (0.0436) |
7e-05 (0.00126) |
0.426 (0.627) |
0.294 (0.479) |
0.0119 (0.0592) |
0.0624 (0.181) |
0.00565 (0.0363) |
0.0379 (0.13) |
0.00032 (0.00471) |
0.0121 (0.0592) |
17p gain | 9 (5%) | 175 |
6e-05 (0.00113) |
0.0204 (0.0863) |
0.406 (0.602) |
0.28 (0.466) |
0.00252 (0.0194) |
0.00052 (0.00631) |
0.00095 (0.00962) |
0.00255 (0.0195) |
0.224 (0.412) |
0.0099 (0.0517) |
8p loss | 41 (22%) | 143 |
0.00104 (0.0103) |
0.0037 (0.0254) |
0.103 (0.258) |
0.201 (0.387) |
0.147 (0.316) |
0.00526 (0.0341) |
0.0156 (0.0705) |
0.0118 (0.0592) |
0.00662 (0.0398) |
0.00227 (0.0181) |
12p loss | 20 (11%) | 164 |
0.0002 (0.00331) |
0.0355 (0.125) |
4e-05 (0.000853) |
0.00043 (0.00571) |
0.0619 (0.181) |
0.00826 (0.0458) |
0.0831 (0.22) |
0.00106 (0.0103) |
0.342 (0.534) |
0.00178 (0.0152) |
20p loss | 20 (11%) | 164 |
0.00034 (0.00475) |
0.0457 (0.145) |
0.663 (0.814) |
0.731 (0.859) |
0.00668 (0.0398) |
0.0927 (0.241) |
0.0376 (0.129) |
0.0406 (0.135) |
0.00212 (0.0172) |
0.0142 (0.0678) |
4p gain | 11 (6%) | 173 |
0.0146 (0.0679) |
0.572 (0.743) |
0.356 (0.549) |
0.0462 (0.146) |
0.00126 (0.0117) |
0.01 (0.052) |
0.0353 (0.124) |
0.0202 (0.0862) |
0.781 (0.893) |
0.204 (0.393) |
4q gain | 8 (4%) | 176 |
0.00053 (0.00631) |
0.224 (0.412) |
0.356 (0.549) |
0.0457 (0.145) |
0.0226 (0.0907) |
0.0343 (0.122) |
0.022 (0.0897) |
0.0394 (0.133) |
0.522 (0.702) |
0.153 (0.325) |
16p gain | 22 (12%) | 162 |
1e-05 (0.000279) |
0.00076 (0.0081) |
0.00172 (0.0148) |
0.428 (0.627) |
0.156 (0.329) |
0.0594 (0.177) |
0.0676 (0.189) |
0.0147 (0.0679) |
0.00208 (0.017) |
0.0286 (0.107) |
16q gain | 23 (12%) | 161 |
1e-05 (0.000279) |
0.0003 (0.0045) |
0.113 (0.271) |
0.838 (0.925) |
0.106 (0.26) |
0.0551 (0.168) |
0.0129 (0.0617) |
0.00077 (0.0081) |
0.00244 (0.019) |
0.003 (0.0219) |
1p loss | 36 (20%) | 148 |
6e-05 (0.00113) |
1e-05 (0.000279) |
0.00574 (0.0366) |
0.139 (0.304) |
0.00949 (0.0502) |
0.0633 (0.181) |
0.166 (0.339) |
0.0514 (0.159) |
0.0292 (0.108) |
0.0232 (0.0908) |
6p loss | 64 (35%) | 120 |
2e-05 (0.000506) |
0.00019 (0.00321) |
0.0824 (0.219) |
0.189 (0.373) |
0.135 (0.3) |
0.0146 (0.0679) |
0.22 (0.411) |
0.00111 (0.0107) |
0.00283 (0.021) |
0.00013 (0.00224) |
13q loss | 20 (11%) | 164 |
0.00061 (0.00686) |
0.00931 (0.0497) |
0.973 (1.00) |
0.633 (0.793) |
0.0027 (0.0202) |
0.158 (0.33) |
0.0238 (0.0912) |
0.0124 (0.0597) |
0.00182 (0.0154) |
0.062 (0.181) |
15q loss | 30 (16%) | 154 |
3e-05 (0.000694) |
0.0089 (0.0484) |
0.565 (0.737) |
0.618 (0.781) |
0.0215 (0.0891) |
0.00198 (0.0164) |
0.0782 (0.211) |
0.00665 (0.0398) |
0.108 (0.263) |
0.00353 (0.0244) |
19p loss | 19 (10%) | 165 |
0.00134 (0.0121) |
0.0223 (0.0899) |
0.498 (0.678) |
0.0678 (0.189) |
0.0623 (0.181) |
0.0231 (0.0908) |
0.389 (0.581) |
0.00666 (0.0398) |
0.0003 (0.0045) |
0.0212 (0.0886) |
21q loss | 58 (32%) | 126 |
1e-05 (0.000279) |
0.0233 (0.0908) |
0.612 (0.777) |
0.132 (0.296) |
0.022 (0.0897) |
0.0957 (0.245) |
0.393 (0.586) |
0.0324 (0.118) |
0.00053 (0.00631) |
0.0366 (0.127) |
7p gain | 52 (28%) | 132 |
1e-05 (0.000279) |
0.0154 (0.07) |
0.00956 (0.0503) |
0.0605 (0.179) |
0.354 (0.548) |
0.267 (0.457) |
0.279 (0.466) |
0.0474 (0.149) |
0.00586 (0.0371) |
0.166 (0.339) |
18p gain | 28 (15%) | 156 |
1e-05 (0.000279) |
0.0197 (0.0845) |
0.561 (0.733) |
0.459 (0.645) |
0.026 (0.0983) |
0.197 (0.386) |
0.146 (0.314) |
0.0229 (0.0908) |
0.0338 (0.122) |
0.101 (0.255) |
20q gain | 45 (24%) | 139 |
1e-05 (0.000279) |
0.0317 (0.117) |
0.23 (0.419) |
0.0206 (0.0863) |
0.544 (0.72) |
0.175 (0.353) |
0.333 (0.523) |
0.0232 (0.0908) |
0.00033 (0.00475) |
0.21 (0.4) |
22q loss | 46 (25%) | 138 |
1e-05 (0.000279) |
0.0049 (0.0323) |
0.858 (0.934) |
0.951 (0.988) |
0.219 (0.411) |
0.377 (0.57) |
0.308 (0.494) |
0.0397 (0.133) |
0.00101 (0.0101) |
0.0285 (0.107) |
2q gain | 16 (9%) | 168 |
0.0358 (0.125) |
0.00171 (0.0148) |
0.446 (0.638) |
0.288 (0.473) |
0.466 (0.651) |
0.182 (0.366) |
0.515 (0.696) |
0.00458 (0.0304) |
0.198 (0.386) |
0.0408 (0.135) |
12p gain | 30 (16%) | 154 |
1e-05 (0.000279) |
0.00094 (0.00962) |
0.308 (0.494) |
0.0239 (0.0912) |
0.675 (0.818) |
0.253 (0.448) |
0.111 (0.268) |
0.0687 (0.191) |
0.00228 (0.0181) |
0.457 (0.642) |
12q gain | 22 (12%) | 162 |
1e-05 (0.000279) |
0.0168 (0.0747) |
0.0558 (0.169) |
0.0552 (0.168) |
0.588 (0.755) |
0.112 (0.269) |
0.206 (0.394) |
0.0417 (0.137) |
0.00412 (0.0278) |
0.152 (0.325) |
20p gain | 34 (18%) | 150 |
1e-05 (0.000279) |
0.0174 (0.0759) |
0.144 (0.313) |
0.117 (0.276) |
0.227 (0.416) |
0.156 (0.329) |
0.22 (0.411) |
0.0172 (0.0756) |
0.00643 (0.0398) |
0.26 (0.456) |
xp gain | 8 (4%) | 176 |
5e-05 (0.00101) |
0.224 (0.412) |
0.73 (0.859) |
0.0982 (0.249) |
0.125 (0.289) |
0.0353 (0.124) |
0.0421 (0.137) |
0.0401 (0.134) |
0.723 (0.856) |
0.0709 (0.195) |
4p loss | 25 (14%) | 159 |
0.0421 (0.137) |
0.00693 (0.041) |
0.293 (0.479) |
0.85 (0.93) |
0.105 (0.26) |
0.104 (0.258) |
0.576 (0.743) |
0.0117 (0.0592) |
0.958 (0.991) |
0.00315 (0.0226) |
12q loss | 28 (15%) | 156 |
1e-05 (0.000279) |
0.06 (0.179) |
0.00452 (0.0303) |
0.0522 (0.161) |
0.154 (0.326) |
0.00239 (0.0188) |
0.123 (0.286) |
0.118 (0.278) |
0.24 (0.433) |
0.0245 (0.0933) |
2p gain | 14 (8%) | 170 |
0.0216 (0.0891) |
0.00061 (0.00686) |
0.447 (0.638) |
0.289 (0.474) |
0.634 (0.793) |
0.185 (0.367) |
0.439 (0.633) |
0.0152 (0.0694) |
0.127 (0.29) |
0.098 (0.249) |
3q gain | 20 (11%) | 164 |
0.00029 (0.0045) |
4e-05 (0.000853) |
0.206 (0.394) |
0.0425 (0.138) |
0.263 (0.456) |
0.278 (0.465) |
0.776 (0.89) |
0.0593 (0.177) |
0.175 (0.353) |
0.27 (0.457) |
5q gain | 20 (11%) | 164 |
1e-05 (0.000279) |
0.485 (0.67) |
0.719 (0.853) |
0.257 (0.453) |
0.328 (0.518) |
0.0101 (0.0522) |
0.11 (0.266) |
0.0346 (0.123) |
0.116 (0.276) |
0.145 (0.313) |
7q gain | 48 (26%) | 136 |
1e-05 (0.000279) |
0.0858 (0.226) |
0.0398 (0.133) |
0.126 (0.289) |
0.758 (0.878) |
0.259 (0.454) |
0.668 (0.816) |
0.339 (0.53) |
0.0235 (0.0912) |
0.45 (0.638) |
8q gain | 48 (26%) | 136 |
3e-05 (0.000694) |
0.00845 (0.0462) |
0.845 (0.929) |
0.788 (0.893) |
0.293 (0.479) |
0.547 (0.722) |
0.399 (0.594) |
0.0806 (0.215) |
0.00119 (0.0112) |
0.0665 (0.187) |
10p gain | 10 (5%) | 174 |
0.0337 (0.122) |
0.201 (0.387) |
0.0186 (0.0806) |
0.0941 (0.243) |
0.216 (0.409) |
0.817 (0.911) |
0.475 (0.662) |
0.901 (0.961) |
0.0009 (0.00935) |
1 (1.00) |
10q gain | 13 (7%) | 171 |
0.0271 (0.102) |
0.0572 (0.173) |
0.0423 (0.138) |
0.138 (0.303) |
0.147 (0.316) |
0.38 (0.573) |
0.296 (0.48) |
0.913 (0.967) |
0.0005 (0.00623) |
1 (1.00) |
11q gain | 15 (8%) | 169 |
0.00591 (0.0371) |
0.0121 (0.0592) |
0.0712 (0.195) |
0.0315 (0.116) |
0.941 (0.98) |
0.936 (0.98) |
0.5 (0.68) |
0.537 (0.716) |
0.282 (0.468) |
0.183 (0.366) |
xq gain | 13 (7%) | 171 |
0.00039 (0.00526) |
0.686 (0.825) |
0.127 (0.289) |
0.317 (0.503) |
0.125 (0.289) |
0.00932 (0.0497) |
0.162 (0.335) |
0.0371 (0.128) |
0.81 (0.908) |
0.0859 (0.226) |
3q loss | 19 (10%) | 165 |
0.032 (0.117) |
0.423 (0.625) |
0.00285 (0.021) |
0.0587 (0.177) |
0.53 (0.708) |
0.673 (0.817) |
0.782 (0.893) |
1 (1.00) |
0.00753 (0.0436) |
0.854 (0.931) |
4q loss | 25 (14%) | 159 |
0.246 (0.44) |
0.0205 (0.0863) |
0.496 (0.678) |
0.359 (0.552) |
0.0545 (0.167) |
0.184 (0.367) |
0.199 (0.386) |
0.0027 (0.0202) |
0.708 (0.844) |
0.00133 (0.0121) |
16p loss | 11 (6%) | 173 |
0.00825 (0.0458) |
0.576 (0.743) |
0.0223 (0.0899) |
0.00923 (0.0497) |
0.671 (0.817) |
0.49 (0.672) |
0.634 (0.793) |
0.427 (0.627) |
0.276 (0.463) |
0.836 (0.925) |
19q loss | 12 (7%) | 172 |
0.00702 (0.0412) |
0.133 (0.296) |
0.299 (0.483) |
0.222 (0.412) |
0.0395 (0.133) |
0.0146 (0.0679) |
0.49 (0.672) |
0.0515 (0.159) |
0.0954 (0.245) |
0.0729 (0.199) |
xq loss | 18 (10%) | 166 |
1e-05 (0.000279) |
0.0434 (0.139) |
0.0078 (0.0442) |
0.186 (0.369) |
0.368 (0.56) |
0.33 (0.521) |
0.263 (0.456) |
0.834 (0.924) |
0.49 (0.672) |
0.586 (0.754) |
3p gain | 10 (5%) | 174 |
0.0122 (0.0593) |
0.00777 (0.0442) |
0.556 (0.731) |
0.206 (0.394) |
0.54 (0.718) |
0.617 (0.781) |
0.841 (0.927) |
0.441 (0.635) |
0.529 (0.708) |
0.528 (0.708) |
5p gain | 28 (15%) | 156 |
1e-05 (0.000279) |
0.359 (0.552) |
0.804 (0.904) |
0.465 (0.651) |
0.669 (0.816) |
0.157 (0.329) |
0.238 (0.43) |
0.126 (0.289) |
0.00663 (0.0398) |
0.454 (0.64) |
6q gain | 5 (3%) | 179 |
0.0167 (0.0747) |
0.656 (0.811) |
1 (1.00) |
0.907 (0.963) |
0.852 (0.931) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0319 (0.117) |
0.454 (0.64) |
8p gain | 26 (14%) | 158 |
0.0035 (0.0244) |
0.0963 (0.245) |
0.649 (0.805) |
0.94 (0.98) |
0.758 (0.878) |
0.958 (0.991) |
0.221 (0.412) |
0.555 (0.731) |
0.012 (0.0592) |
0.665 (0.814) |
11p gain | 13 (7%) | 171 |
0.00076 (0.0081) |
0.0451 (0.144) |
0.132 (0.296) |
0.715 (0.851) |
0.752 (0.877) |
1 (1.00) |
0.727 (0.859) |
0.788 (0.893) |
0.431 (0.629) |
0.75 (0.875) |
19p gain | 17 (9%) | 167 |
0.00059 (0.00683) |
0.693 (0.829) |
0.275 (0.463) |
0.116 (0.276) |
0.683 (0.823) |
0.618 (0.781) |
0.0121 (0.0592) |
0.336 (0.527) |
0.384 (0.577) |
0.599 (0.765) |
10q loss | 30 (16%) | 154 |
5e-05 (0.00101) |
0.898 (0.96) |
0.896 (0.96) |
0.198 (0.386) |
0.185 (0.367) |
0.0172 (0.0756) |
0.53 (0.708) |
0.333 (0.523) |
0.23 (0.419) |
0.0991 (0.25) |
11q loss | 16 (9%) | 168 |
0.00068 (0.00755) |
0.658 (0.812) |
0.479 (0.663) |
0.00114 (0.0109) |
0.784 (0.893) |
0.817 (0.911) |
0.927 (0.974) |
0.572 (0.743) |
0.401 (0.596) |
0.822 (0.914) |
17q loss | 22 (12%) | 162 |
0.00075 (0.0081) |
0.223 (0.412) |
0.0107 (0.0548) |
0.0813 (0.217) |
0.156 (0.329) |
0.386 (0.579) |
0.517 (0.697) |
0.311 (0.498) |
0.177 (0.355) |
0.318 (0.503) |
xp loss | 27 (15%) | 157 |
0.00013 (0.00224) |
0.136 (0.3) |
0.0342 (0.122) |
0.641 (0.797) |
0.438 (0.633) |
0.285 (0.469) |
0.136 (0.3) |
0.955 (0.991) |
0.252 (0.447) |
0.692 (0.829) |
1p gain | 18 (10%) | 166 |
0.429 (0.628) |
0.0784 (0.211) |
0.103 (0.258) |
0.0218 (0.0895) |
0.758 (0.878) |
0.739 (0.866) |
1 (1.00) |
0.937 (0.98) |
0.135 (0.3) |
0.893 (0.96) |
6p gain | 7 (4%) | 177 |
0.00045 (0.00579) |
0.526 (0.707) |
0.745 (0.871) |
0.432 (0.629) |
0.889 (0.958) |
1 (1.00) |
0.907 (0.963) |
0.873 (0.947) |
0.0605 (0.179) |
1 (1.00) |
9p gain | 8 (4%) | 176 |
0.0114 (0.0579) |
1 (1.00) |
0.798 (0.901) |
0.266 (0.456) |
0.591 (0.756) |
0.633 (0.793) |
0.681 (0.823) |
0.787 (0.893) |
0.576 (0.743) |
0.445 (0.638) |
9q gain | 12 (7%) | 172 |
7e-05 (0.00126) |
0.659 (0.812) |
0.822 (0.914) |
0.502 (0.683) |
0.928 (0.974) |
0.612 (0.777) |
0.63 (0.793) |
0.265 (0.456) |
0.263 (0.456) |
0.283 (0.468) |
13q gain | 29 (16%) | 155 |
0.0173 (0.0756) |
0.787 (0.893) |
0.874 (0.947) |
0.898 (0.96) |
0.211 (0.401) |
0.471 (0.658) |
0.219 (0.411) |
0.126 (0.289) |
0.435 (0.632) |
0.796 (0.9) |
14q gain | 26 (14%) | 158 |
2e-05 (0.000506) |
0.223 (0.412) |
0.59 (0.756) |
0.662 (0.814) |
0.275 (0.463) |
0.576 (0.743) |
0.17 (0.347) |
0.265 (0.456) |
0.103 (0.258) |
0.924 (0.974) |
17q gain | 17 (9%) | 167 |
0.00048 (0.00607) |
0.252 (0.447) |
0.664 (0.814) |
0.814 (0.911) |
0.19 (0.374) |
0.0629 (0.181) |
0.0962 (0.245) |
0.0692 (0.192) |
0.121 (0.283) |
0.247 (0.441) |
18q gain | 12 (7%) | 172 |
3e-05 (0.000694) |
0.682 (0.823) |
0.879 (0.951) |
0.162 (0.334) |
0.381 (0.574) |
0.488 (0.672) |
0.48 (0.663) |
0.123 (0.286) |
0.366 (0.558) |
0.0887 (0.232) |
19q gain | 28 (15%) | 156 |
0.00027 (0.00429) |
0.316 (0.503) |
0.885 (0.956) |
0.639 (0.796) |
0.896 (0.96) |
0.889 (0.958) |
0.0694 (0.192) |
0.69 (0.827) |
0.106 (0.26) |
1 (1.00) |
1q loss | 8 (4%) | 176 |
0.0432 (0.139) |
0.413 (0.612) |
0.742 (0.869) |
0.925 (0.974) |
1 (1.00) |
0.511 (0.692) |
0.758 (0.878) |
0.697 (0.832) |
0.105 (0.26) |
0.783 (0.893) |
2p loss | 11 (6%) | 173 |
0.00808 (0.0454) |
0.573 (0.743) |
0.448 (0.638) |
0.8 (0.902) |
0.671 (0.817) |
0.192 (0.377) |
0.921 (0.973) |
0.758 (0.878) |
0.265 (0.456) |
0.847 (0.929) |
2q loss | 5 (3%) | 179 |
0.00059 (0.00683) |
0.76 (0.878) |
0.451 (0.638) |
0.0902 (0.235) |
0.449 (0.638) |
0.295 (0.479) |
0.157 (0.329) |
0.361 (0.554) |
||
3p loss | 36 (20%) | 148 |
0.00161 (0.0142) |
0.0503 (0.157) |
0.131 (0.296) |
0.451 (0.638) |
0.652 (0.807) |
0.907 (0.963) |
0.209 (0.398) |
0.299 (0.483) |
0.109 (0.265) |
0.557 (0.732) |
5p loss | 9 (5%) | 175 |
0.00335 (0.0236) |
0.853 (0.931) |
0.934 (0.98) |
0.817 (0.911) |
0.91 (0.965) |
0.239 (0.431) |
0.843 (0.928) |
1 (1.00) |
0.159 (0.331) |
0.803 (0.904) |
5q loss | 13 (7%) | 171 |
0.00391 (0.0266) |
0.261 (0.456) |
0.729 (0.859) |
0.353 (0.548) |
0.935 (0.98) |
0.25 (0.444) |
0.62 (0.781) |
0.449 (0.638) |
0.139 (0.303) |
0.603 (0.768) |
8q loss | 16 (9%) | 168 |
0.019 (0.0818) |
0.28 (0.466) |
0.063 (0.181) |
0.304 (0.49) |
0.794 (0.899) |
0.438 (0.633) |
0.333 (0.523) |
0.449 (0.638) |
0.0503 (0.157) |
0.169 (0.344) |
10p loss | 36 (20%) | 148 |
0.00036 (0.00494) |
0.296 (0.48) |
0.896 (0.96) |
0.675 (0.818) |
0.16 (0.331) |
0.192 (0.377) |
0.368 (0.56) |
0.144 (0.313) |
0.0633 (0.181) |
0.094 (0.243) |
11p loss | 17 (9%) | 167 |
0.00141 (0.0126) |
0.125 (0.289) |
0.284 (0.468) |
0.0746 (0.202) |
0.942 (0.98) |
0.684 (0.823) |
0.476 (0.663) |
0.48 (0.663) |
0.479 (0.663) |
0.728 (0.859) |
14q loss | 16 (9%) | 168 |
0.235 (0.427) |
0.0227 (0.0907) |
0.551 (0.727) |
0.734 (0.862) |
0.492 (0.673) |
0.0741 (0.201) |
0.374 (0.567) |
0.218 (0.411) |
0.771 (0.889) |
0.583 (0.751) |
16q loss | 13 (7%) | 171 |
0.0239 (0.0912) |
0.94 (0.98) |
0.719 (0.853) |
0.378 (0.571) |
0.706 (0.842) |
0.122 (0.285) |
0.432 (0.629) |
0.242 (0.435) |
0.131 (0.295) |
0.281 (0.466) |
15q gain | 14 (8%) | 170 |
0.0887 (0.232) |
0.0642 (0.183) |
0.666 (0.814) |
1 (1.00) |
0.343 (0.534) |
0.133 (0.296) |
0.249 (0.444) |
1 (1.00) |
0.254 (0.448) |
0.866 (0.941) |
22q gain | 8 (4%) | 176 |
0.351 (0.545) |
0.0652 (0.185) |
0.881 (0.952) |
0.23 (0.419) |
0.109 (0.264) |
0.0785 (0.211) |
0.365 (0.558) |
0.0657 (0.186) |
0.145 (0.313) |
0.269 (0.457) |
7p loss | 3 (2%) | 181 |
0.175 (0.353) |
0.619 (0.781) |
0.799 (0.902) |
0.773 (0.889) |
0.428 (0.627) |
1 (1.00) |
0.433 (0.63) |
0.314 (0.5) |
||
7q loss | 4 (2%) | 180 |
0.0712 (0.195) |
0.237 (0.43) |
0.164 (0.338) |
0.162 (0.334) |
0.81 (0.908) |
1 (1.00) |
0.544 (0.72) |
1 (1.00) |
0.264 (0.456) |
0.561 (0.733) |
9q loss | 43 (23%) | 141 |
0.117 (0.276) |
0.543 (0.72) |
0.515 (0.696) |
0.116 (0.276) |
0.27 (0.457) |
0.44 (0.634) |
0.198 (0.386) |
0.266 (0.456) |
0.219 (0.411) |
0.312 (0.499) |
18p loss | 55 (30%) | 129 |
0.128 (0.291) |
0.269 (0.457) |
0.837 (0.925) |
0.766 (0.883) |
0.647 (0.804) |
0.636 (0.794) |
0.365 (0.558) |
0.902 (0.961) |
0.269 (0.457) |
0.273 (0.46) |
20q loss | 5 (3%) | 179 |
0.266 (0.456) |
0.066 (0.186) |
0.384 (0.577) |
0.847 (0.929) |
0.921 (0.973) |
0.827 (0.918) |
0.129 (0.292) |
0.602 (0.768) |
P value = 0.0218 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
1P GAIN MUTATED | 2 | 5 | 1 | 4 | 0 |
1P GAIN WILD-TYPE | 45 | 20 | 15 | 12 | 18 |
P value = 0.00759 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
1Q GAIN MUTATED | 14 | 28 | 8 |
1Q GAIN WILD-TYPE | 71 | 47 | 16 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
1Q GAIN MUTATED | 23 | 5 | 16 | 6 |
1Q GAIN WILD-TYPE | 22 | 42 | 34 | 35 |
P value = 0.0119 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
1Q GAIN MUTATED | 28 | 14 | 5 |
1Q GAIN WILD-TYPE | 55 | 34 | 41 |
P value = 0.00565 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
1Q GAIN MUTATED | 27 | 11 | 6 | 3 |
1Q GAIN WILD-TYPE | 42 | 29 | 29 | 30 |
P value = 0.0379 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
1Q GAIN MUTATED | 34 | 9 | 4 |
1Q GAIN WILD-TYPE | 68 | 33 | 29 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
1Q GAIN MUTATED | 29 | 8 | 9 |
1Q GAIN WILD-TYPE | 40 | 59 | 28 |
P value = 0.0121 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
1Q GAIN MUTATED | 25 | 17 | 4 |
1Q GAIN WILD-TYPE | 61 | 30 | 36 |
P value = 0.0216 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
2P GAIN MUTATED | 2 | 10 | 2 |
2P GAIN WILD-TYPE | 83 | 65 | 22 |
P value = 0.00061 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
2P GAIN MUTATED | 6 | 0 | 8 | 0 |
2P GAIN WILD-TYPE | 39 | 47 | 42 | 41 |
P value = 0.0152 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
2P GAIN MUTATED | 13 | 0 | 1 |
2P GAIN WILD-TYPE | 89 | 42 | 32 |
P value = 0.0358 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
2Q GAIN MUTATED | 3 | 11 | 2 |
2Q GAIN WILD-TYPE | 82 | 64 | 22 |
P value = 0.00171 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
2Q GAIN MUTATED | 6 | 0 | 9 | 1 |
2Q GAIN WILD-TYPE | 39 | 47 | 41 | 40 |
P value = 0.00458 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
2Q GAIN MUTATED | 15 | 0 | 1 |
2Q GAIN WILD-TYPE | 87 | 42 | 32 |
P value = 0.0408 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
2Q GAIN MUTATED | 13 | 2 | 1 |
2Q GAIN WILD-TYPE | 73 | 45 | 39 |
P value = 0.0122 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
3P GAIN MUTATED | 1 | 5 | 4 |
3P GAIN WILD-TYPE | 84 | 70 | 20 |
P value = 0.00777 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
3P GAIN MUTATED | 5 | 0 | 5 | 0 |
3P GAIN WILD-TYPE | 40 | 47 | 45 | 41 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
3Q GAIN MUTATED | 3 | 9 | 8 |
3Q GAIN WILD-TYPE | 82 | 66 | 16 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
3Q GAIN MUTATED | 9 | 0 | 11 | 0 |
3Q GAIN WILD-TYPE | 36 | 47 | 39 | 41 |
P value = 0.0425 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
3Q GAIN MUTATED | 5 | 2 | 1 | 0 | 6 |
3Q GAIN WILD-TYPE | 42 | 23 | 15 | 16 | 12 |
P value = 0.0146 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
4P GAIN MUTATED | 3 | 3 | 5 |
4P GAIN WILD-TYPE | 82 | 72 | 19 |
P value = 0.0462 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
4P GAIN MUTATED | 1 | 0 | 0 | 3 | 1 |
4P GAIN WILD-TYPE | 46 | 25 | 16 | 13 | 17 |
P value = 0.00126 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
4P GAIN MUTATED | 3 | 0 | 8 |
4P GAIN WILD-TYPE | 80 | 48 | 38 |
P value = 0.01 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
4P GAIN MUTATED | 1 | 5 | 5 |
4P GAIN WILD-TYPE | 73 | 70 | 23 |
P value = 0.0353 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
4P GAIN MUTATED | 3 | 1 | 1 | 6 |
4P GAIN WILD-TYPE | 66 | 39 | 34 | 27 |
P value = 0.0202 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
4P GAIN MUTATED | 6 | 0 | 5 |
4P GAIN WILD-TYPE | 96 | 42 | 28 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
4Q GAIN MUTATED | 1 | 2 | 5 |
4Q GAIN WILD-TYPE | 84 | 73 | 19 |
P value = 0.0457 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
4Q GAIN MUTATED | 1 | 0 | 0 | 3 | 1 |
4Q GAIN WILD-TYPE | 46 | 25 | 16 | 13 | 17 |
P value = 0.0226 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
4Q GAIN MUTATED | 3 | 0 | 5 |
4Q GAIN WILD-TYPE | 80 | 48 | 41 |
P value = 0.0343 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
4Q GAIN MUTATED | 1 | 3 | 4 |
4Q GAIN WILD-TYPE | 73 | 72 | 24 |
P value = 0.022 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
4Q GAIN MUTATED | 2 | 1 | 0 | 5 |
4Q GAIN WILD-TYPE | 67 | 39 | 35 | 28 |
P value = 0.0394 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
4Q GAIN MUTATED | 4 | 0 | 4 |
4Q GAIN WILD-TYPE | 98 | 42 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
5P GAIN MUTATED | 3 | 11 | 14 |
5P GAIN WILD-TYPE | 82 | 64 | 10 |
P value = 0.00663 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
5P GAIN MUTATED | 14 | 4 | 10 |
5P GAIN WILD-TYPE | 55 | 63 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
5Q GAIN MUTATED | 2 | 7 | 11 |
5Q GAIN WILD-TYPE | 83 | 68 | 13 |
P value = 0.0101 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
5Q GAIN MUTATED | 7 | 5 | 8 |
5Q GAIN WILD-TYPE | 67 | 70 | 20 |
P value = 0.0346 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
5Q GAIN MUTATED | 10 | 2 | 8 |
5Q GAIN WILD-TYPE | 92 | 40 | 25 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
6P GAIN MUTATED | 1 | 1 | 5 |
6P GAIN WILD-TYPE | 84 | 74 | 19 |
P value = 0.0167 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
6Q GAIN MUTATED | 1 | 1 | 3 |
6Q GAIN WILD-TYPE | 84 | 74 | 21 |
P value = 0.0319 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
6Q GAIN MUTATED | 1 | 0 | 3 |
6Q GAIN WILD-TYPE | 68 | 67 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
7P GAIN MUTATED | 12 | 23 | 17 |
7P GAIN WILD-TYPE | 73 | 52 | 7 |
P value = 0.0154 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
7P GAIN MUTATED | 18 | 9 | 18 | 6 |
7P GAIN WILD-TYPE | 27 | 38 | 32 | 35 |
P value = 0.00956 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
7P GAIN MUTATED | 16 | 8 | 1 | 1 | 7 |
7P GAIN WILD-TYPE | 23 | 17 | 19 | 14 | 16 |
P value = 0.0474 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
7P GAIN MUTATED | 36 | 7 | 7 |
7P GAIN WILD-TYPE | 66 | 35 | 26 |
P value = 0.00586 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
7P GAIN MUTATED | 26 | 10 | 13 |
7P GAIN WILD-TYPE | 43 | 57 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
7Q GAIN MUTATED | 12 | 20 | 16 |
7Q GAIN WILD-TYPE | 73 | 55 | 8 |
P value = 0.0398 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
7Q GAIN MUTATED | 14 | 6 | 1 | 1 | 6 |
7Q GAIN WILD-TYPE | 25 | 19 | 19 | 14 | 17 |
P value = 0.0235 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
7Q GAIN MUTATED | 22 | 10 | 13 |
7Q GAIN WILD-TYPE | 47 | 57 | 24 |
P value = 0.0035 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
8P GAIN MUTATED | 5 | 14 | 7 |
8P GAIN WILD-TYPE | 80 | 61 | 17 |
P value = 0.012 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
8P GAIN MUTATED | 11 | 4 | 10 |
8P GAIN WILD-TYPE | 58 | 63 | 27 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
8Q GAIN MUTATED | 10 | 25 | 13 |
8Q GAIN WILD-TYPE | 75 | 50 | 11 |
P value = 0.00845 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
8Q GAIN MUTATED | 18 | 8 | 16 | 5 |
8Q GAIN WILD-TYPE | 27 | 39 | 34 | 36 |
P value = 0.00119 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
8Q GAIN MUTATED | 23 | 8 | 15 |
8Q GAIN WILD-TYPE | 46 | 59 | 22 |
P value = 0.0114 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
9P GAIN MUTATED | 1 | 3 | 4 |
9P GAIN WILD-TYPE | 84 | 72 | 20 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
9Q GAIN MUTATED | 0 | 6 | 6 |
9Q GAIN WILD-TYPE | 85 | 69 | 18 |
P value = 0.0337 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
10P GAIN MUTATED | 1 | 7 | 2 |
10P GAIN WILD-TYPE | 84 | 68 | 22 |
P value = 0.0186 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
10P GAIN MUTATED | 6 | 0 | 0 | 0 | 0 |
10P GAIN WILD-TYPE | 33 | 25 | 20 | 15 | 23 |
P value = 9e-04 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
10P GAIN MUTATED | 2 | 0 | 6 |
10P GAIN WILD-TYPE | 67 | 67 | 31 |
P value = 0.0271 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
10Q GAIN MUTATED | 2 | 7 | 4 |
10Q GAIN WILD-TYPE | 83 | 68 | 20 |
P value = 0.0423 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
10Q GAIN MUTATED | 7 | 0 | 0 | 1 | 1 |
10Q GAIN WILD-TYPE | 32 | 25 | 20 | 14 | 22 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
10Q GAIN MUTATED | 3 | 0 | 7 |
10Q GAIN WILD-TYPE | 66 | 67 | 30 |
P value = 0.00076 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
11P GAIN MUTATED | 1 | 6 | 6 |
11P GAIN WILD-TYPE | 84 | 69 | 18 |
P value = 0.0451 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
11P GAIN MUTATED | 5 | 0 | 6 | 2 |
11P GAIN WILD-TYPE | 40 | 47 | 44 | 39 |
P value = 0.00591 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
11Q GAIN MUTATED | 2 | 8 | 5 |
11Q GAIN WILD-TYPE | 83 | 67 | 19 |
P value = 0.0121 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
11Q GAIN MUTATED | 5 | 0 | 8 | 2 |
11Q GAIN WILD-TYPE | 40 | 47 | 42 | 39 |
P value = 0.0315 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
11Q GAIN MUTATED | 4 | 1 | 0 | 0 | 5 |
11Q GAIN WILD-TYPE | 43 | 24 | 16 | 16 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
12P GAIN MUTATED | 1 | 10 | 19 |
12P GAIN WILD-TYPE | 84 | 65 | 5 |
P value = 0.00094 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
12P GAIN MUTATED | 12 | 7 | 11 | 0 |
12P GAIN WILD-TYPE | 33 | 40 | 39 | 41 |
P value = 0.0239 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
12P GAIN MUTATED | 2 | 3 | 3 | 3 | 6 |
12P GAIN WILD-TYPE | 45 | 22 | 13 | 13 | 12 |
P value = 0.00228 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
12P GAIN MUTATED | 12 | 4 | 12 |
12P GAIN WILD-TYPE | 57 | 63 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
12Q GAIN MUTATED | 1 | 4 | 17 |
12Q GAIN WILD-TYPE | 84 | 71 | 7 |
P value = 0.0168 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
12Q GAIN MUTATED | 8 | 6 | 8 | 0 |
12Q GAIN WILD-TYPE | 37 | 41 | 42 | 41 |
P value = 0.0417 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
12Q GAIN MUTATED | 12 | 2 | 8 |
12Q GAIN WILD-TYPE | 90 | 40 | 25 |
P value = 0.00412 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
12Q GAIN MUTATED | 8 | 3 | 10 |
12Q GAIN WILD-TYPE | 61 | 64 | 27 |
P value = 0.0173 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
13Q GAIN MUTATED | 7 | 15 | 7 |
13Q GAIN WILD-TYPE | 78 | 60 | 17 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
14Q GAIN MUTATED | 3 | 12 | 11 |
14Q GAIN WILD-TYPE | 82 | 63 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
16P GAIN MUTATED | 1 | 13 | 8 |
16P GAIN WILD-TYPE | 84 | 62 | 16 |
P value = 0.00076 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
16P GAIN MUTATED | 10 | 1 | 10 | 1 |
16P GAIN WILD-TYPE | 35 | 46 | 40 | 40 |
P value = 0.00172 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
16P GAIN MUTATED | 12 | 3 | 1 | 0 | 0 |
16P GAIN WILD-TYPE | 27 | 22 | 19 | 15 | 23 |
P value = 0.0147 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
16P GAIN MUTATED | 19 | 2 | 1 |
16P GAIN WILD-TYPE | 83 | 40 | 32 |
P value = 0.00208 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
16P GAIN MUTATED | 11 | 2 | 9 |
16P GAIN WILD-TYPE | 58 | 65 | 28 |
P value = 0.0286 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
16P GAIN MUTATED | 16 | 5 | 1 |
16P GAIN WILD-TYPE | 70 | 42 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
16Q GAIN MUTATED | 1 | 14 | 8 |
16Q GAIN WILD-TYPE | 84 | 61 | 16 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
16Q GAIN MUTATED | 9 | 1 | 12 | 1 |
16Q GAIN WILD-TYPE | 36 | 46 | 38 | 40 |
P value = 0.0129 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
16Q GAIN MUTATED | 16 | 4 | 1 | 2 |
16Q GAIN WILD-TYPE | 53 | 36 | 34 | 31 |
P value = 0.00077 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
16Q GAIN MUTATED | 21 | 2 | 0 |
16Q GAIN WILD-TYPE | 81 | 40 | 33 |
P value = 0.00244 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
16Q GAIN MUTATED | 13 | 2 | 8 |
16Q GAIN WILD-TYPE | 56 | 65 | 29 |
P value = 0.003 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
16Q GAIN MUTATED | 17 | 6 | 0 |
16Q GAIN WILD-TYPE | 69 | 41 | 40 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
17P GAIN MUTATED | 3 | 0 | 6 |
17P GAIN WILD-TYPE | 82 | 75 | 18 |
P value = 0.0204 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
17P GAIN MUTATED | 2 | 6 | 0 | 1 |
17P GAIN WILD-TYPE | 43 | 41 | 50 | 40 |
P value = 0.00252 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
17P GAIN MUTATED | 1 | 1 | 7 |
17P GAIN WILD-TYPE | 82 | 47 | 39 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
17P GAIN MUTATED | 1 | 2 | 6 |
17P GAIN WILD-TYPE | 73 | 73 | 22 |
P value = 0.00095 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
17P GAIN MUTATED | 0 | 1 | 2 | 6 |
17P GAIN WILD-TYPE | 69 | 39 | 33 | 27 |
P value = 0.00255 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
17P GAIN MUTATED | 2 | 1 | 6 |
17P GAIN WILD-TYPE | 100 | 41 | 27 |
P value = 0.0099 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
17P GAIN MUTATED | 2 | 1 | 6 |
17P GAIN WILD-TYPE | 84 | 46 | 34 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
17Q GAIN MUTATED | 2 | 8 | 7 |
17Q GAIN WILD-TYPE | 83 | 67 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
18P GAIN MUTATED | 2 | 16 | 10 |
18P GAIN WILD-TYPE | 83 | 59 | 14 |
P value = 0.0197 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
18P GAIN MUTATED | 8 | 4 | 13 | 2 |
18P GAIN WILD-TYPE | 37 | 43 | 37 | 39 |
P value = 0.026 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
18P GAIN MUTATED | 19 | 3 | 5 |
18P GAIN WILD-TYPE | 64 | 45 | 41 |
P value = 0.0229 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
18P GAIN MUTATED | 22 | 2 | 3 |
18P GAIN WILD-TYPE | 80 | 40 | 30 |
P value = 0.0338 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
18P GAIN MUTATED | 16 | 5 | 5 |
18P GAIN WILD-TYPE | 53 | 62 | 32 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
18Q GAIN MUTATED | 1 | 4 | 7 |
18Q GAIN WILD-TYPE | 84 | 71 | 17 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
19P GAIN MUTATED | 4 | 5 | 8 |
19P GAIN WILD-TYPE | 81 | 70 | 16 |
P value = 0.0121 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
19P GAIN MUTATED | 8 | 2 | 0 | 7 |
19P GAIN WILD-TYPE | 61 | 38 | 35 | 26 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
19Q GAIN MUTATED | 6 | 12 | 10 |
19Q GAIN WILD-TYPE | 79 | 63 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
20P GAIN MUTATED | 7 | 12 | 15 |
20P GAIN WILD-TYPE | 78 | 63 | 9 |
P value = 0.0174 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
20P GAIN MUTATED | 15 | 7 | 8 | 3 |
20P GAIN WILD-TYPE | 30 | 40 | 42 | 38 |
P value = 0.0172 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
20P GAIN MUTATED | 23 | 2 | 8 |
20P GAIN WILD-TYPE | 79 | 40 | 25 |
P value = 0.00643 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
20P GAIN MUTATED | 16 | 5 | 11 |
20P GAIN WILD-TYPE | 53 | 62 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
20Q GAIN MUTATED | 8 | 21 | 16 |
20Q GAIN WILD-TYPE | 77 | 54 | 8 |
P value = 0.0317 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
20Q GAIN MUTATED | 16 | 10 | 14 | 4 |
20Q GAIN WILD-TYPE | 29 | 37 | 36 | 37 |
P value = 0.0206 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
20Q GAIN MUTATED | 11 | 6 | 0 | 7 | 7 |
20Q GAIN WILD-TYPE | 36 | 19 | 16 | 9 | 11 |
P value = 0.0232 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
20Q GAIN MUTATED | 31 | 4 | 8 |
20Q GAIN WILD-TYPE | 71 | 38 | 25 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
20Q GAIN MUTATED | 22 | 6 | 14 |
20Q GAIN WILD-TYPE | 47 | 61 | 23 |
P value = 5e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
XP GAIN MUTATED | 0 | 2 | 6 |
XP GAIN WILD-TYPE | 85 | 73 | 18 |
P value = 0.0353 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
XP GAIN MUTATED | 1 | 3 | 4 |
XP GAIN WILD-TYPE | 73 | 72 | 24 |
P value = 0.0421 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
XP GAIN MUTATED | 4 | 0 | 0 | 4 |
XP GAIN WILD-TYPE | 65 | 40 | 35 | 29 |
P value = 0.0401 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
XP GAIN MUTATED | 4 | 0 | 4 |
XP GAIN WILD-TYPE | 98 | 42 | 29 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
XQ GAIN MUTATED | 2 | 4 | 7 |
XQ GAIN WILD-TYPE | 83 | 71 | 17 |
P value = 0.00932 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
XQ GAIN MUTATED | 2 | 5 | 6 |
XQ GAIN WILD-TYPE | 72 | 70 | 22 |
P value = 0.0371 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
XQ GAIN MUTATED | 6 | 1 | 6 |
XQ GAIN WILD-TYPE | 96 | 41 | 27 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
1P LOSS MUTATED | 5 | 24 | 7 |
1P LOSS WILD-TYPE | 80 | 51 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
1P LOSS MUTATED | 22 | 6 | 7 | 1 |
1P LOSS WILD-TYPE | 23 | 41 | 43 | 40 |
P value = 0.00574 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
1P LOSS MUTATED | 15 | 2 | 3 | 0 | 5 |
1P LOSS WILD-TYPE | 24 | 23 | 17 | 15 | 18 |
P value = 0.00949 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
1P LOSS MUTATED | 23 | 8 | 3 |
1P LOSS WILD-TYPE | 60 | 40 | 43 |
P value = 0.0292 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
1P LOSS MUTATED | 17 | 6 | 9 |
1P LOSS WILD-TYPE | 52 | 61 | 28 |
P value = 0.0232 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
1P LOSS MUTATED | 21 | 9 | 2 |
1P LOSS WILD-TYPE | 65 | 38 | 38 |
P value = 0.0432 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
1Q LOSS MUTATED | 1 | 4 | 3 |
1Q LOSS WILD-TYPE | 84 | 71 | 21 |
P value = 0.00808 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
2P LOSS MUTATED | 2 | 4 | 5 |
2P LOSS WILD-TYPE | 83 | 71 | 19 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
2Q LOSS MUTATED | 0 | 1 | 4 |
2Q LOSS WILD-TYPE | 85 | 74 | 20 |
P value = 0.00161 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
3P LOSS MUTATED | 8 | 19 | 9 |
3P LOSS WILD-TYPE | 77 | 56 | 15 |
P value = 0.032 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
3Q LOSS MUTATED | 5 | 8 | 6 |
3Q LOSS WILD-TYPE | 80 | 67 | 18 |
P value = 0.00285 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
3Q LOSS MUTATED | 10 | 1 | 0 | 1 | 0 |
3Q LOSS WILD-TYPE | 29 | 24 | 20 | 14 | 23 |
P value = 0.00753 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
3Q LOSS MUTATED | 8 | 2 | 8 |
3Q LOSS WILD-TYPE | 61 | 65 | 29 |
P value = 0.0421 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
4P LOSS MUTATED | 6 | 15 | 4 |
4P LOSS WILD-TYPE | 79 | 60 | 20 |
P value = 0.00693 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
4P LOSS MUTATED | 11 | 1 | 9 | 4 |
4P LOSS WILD-TYPE | 34 | 46 | 41 | 37 |
P value = 0.0117 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
4P LOSS MUTATED | 20 | 1 | 3 |
4P LOSS WILD-TYPE | 82 | 41 | 30 |
P value = 0.00315 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
4P LOSS MUTATED | 19 | 2 | 2 |
4P LOSS WILD-TYPE | 67 | 45 | 38 |
P value = 0.0205 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
4Q LOSS MUTATED | 10 | 1 | 8 | 6 |
4Q LOSS WILD-TYPE | 35 | 46 | 42 | 35 |
P value = 0.0027 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
4Q LOSS MUTATED | 17 | 0 | 7 |
4Q LOSS WILD-TYPE | 85 | 42 | 26 |
P value = 0.00133 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
4Q LOSS MUTATED | 17 | 0 | 6 |
4Q LOSS WILD-TYPE | 69 | 47 | 34 |
P value = 0.00335 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
5P LOSS MUTATED | 0 | 8 | 1 |
5P LOSS WILD-TYPE | 85 | 67 | 23 |
P value = 0.00391 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
5Q LOSS MUTATED | 1 | 8 | 4 |
5Q LOSS WILD-TYPE | 84 | 67 | 20 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
6P LOSS MUTATED | 15 | 37 | 12 |
6P LOSS WILD-TYPE | 70 | 38 | 12 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
6P LOSS MUTATED | 23 | 8 | 24 | 8 |
6P LOSS WILD-TYPE | 22 | 39 | 26 | 33 |
P value = 0.0146 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
6P LOSS MUTATED | 21 | 34 | 5 |
6P LOSS WILD-TYPE | 53 | 41 | 23 |
P value = 0.00111 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
6P LOSS MUTATED | 46 | 7 | 7 |
6P LOSS WILD-TYPE | 56 | 35 | 26 |
P value = 0.00283 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
6P LOSS MUTATED | 31 | 13 | 16 |
6P LOSS WILD-TYPE | 38 | 54 | 21 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
6P LOSS MUTATED | 43 | 11 | 6 |
6P LOSS WILD-TYPE | 43 | 36 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
6Q LOSS MUTATED | 18 | 51 | 14 |
6Q LOSS WILD-TYPE | 67 | 24 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
6Q LOSS MUTATED | 27 | 9 | 34 | 12 |
6Q LOSS WILD-TYPE | 18 | 38 | 16 | 29 |
P value = 0.039 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
6Q LOSS MUTATED | 24 | 8 | 10 | 3 | 11 |
6Q LOSS WILD-TYPE | 15 | 17 | 10 | 12 | 12 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
6Q LOSS MUTATED | 49 | 18 | 11 |
6Q LOSS WILD-TYPE | 34 | 30 | 35 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
6Q LOSS MUTATED | 29 | 44 | 5 |
6Q LOSS WILD-TYPE | 45 | 31 | 23 |
P value = 0.00134 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
6Q LOSS MUTATED | 43 | 14 | 12 | 9 |
6Q LOSS WILD-TYPE | 26 | 26 | 23 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
6Q LOSS MUTATED | 61 | 10 | 7 |
6Q LOSS WILD-TYPE | 41 | 32 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
6Q LOSS MUTATED | 46 | 13 | 19 |
6Q LOSS WILD-TYPE | 23 | 54 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
6Q LOSS MUTATED | 54 | 18 | 6 |
6Q LOSS WILD-TYPE | 32 | 29 | 34 |
P value = 0.00104 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
8P LOSS MUTATED | 9 | 23 | 9 |
8P LOSS WILD-TYPE | 76 | 52 | 15 |
P value = 0.0037 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
8P LOSS MUTATED | 10 | 7 | 20 | 4 |
8P LOSS WILD-TYPE | 35 | 40 | 30 | 37 |
P value = 0.00526 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
8P LOSS MUTATED | 11 | 26 | 3 |
8P LOSS WILD-TYPE | 63 | 49 | 25 |
P value = 0.0156 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
8P LOSS MUTATED | 23 | 3 | 7 | 7 |
8P LOSS WILD-TYPE | 46 | 37 | 28 | 26 |
P value = 0.0118 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
8P LOSS MUTATED | 31 | 4 | 5 |
8P LOSS WILD-TYPE | 71 | 38 | 28 |
P value = 0.00662 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
8P LOSS MUTATED | 20 | 7 | 12 |
8P LOSS WILD-TYPE | 49 | 60 | 25 |
P value = 0.00227 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
8P LOSS MUTATED | 29 | 6 | 4 |
8P LOSS WILD-TYPE | 57 | 41 | 36 |
P value = 0.019 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
8Q LOSS MUTATED | 3 | 8 | 5 |
8Q LOSS WILD-TYPE | 82 | 67 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
9P LOSS MUTATED | 18 | 49 | 8 |
9P LOSS WILD-TYPE | 67 | 26 | 16 |
P value = 0.00663 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
9P LOSS MUTATED | 20 | 12 | 29 | 13 |
9P LOSS WILD-TYPE | 25 | 35 | 21 | 28 |
P value = 0.0031 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
9P LOSS MUTATED | 41 | 19 | 9 |
9P LOSS WILD-TYPE | 42 | 29 | 37 |
P value = 0.0395 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
9P LOSS MUTATED | 31 | 33 | 5 |
9P LOSS WILD-TYPE | 43 | 42 | 23 |
P value = 0.0168 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
9P LOSS MUTATED | 36 | 13 | 13 | 7 |
9P LOSS WILD-TYPE | 33 | 27 | 22 | 26 |
P value = 0.0143 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
9P LOSS MUTATED | 49 | 12 | 8 |
9P LOSS WILD-TYPE | 53 | 30 | 25 |
P value = 0.00844 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
9P LOSS MUTATED | 35 | 17 | 16 |
9P LOSS WILD-TYPE | 34 | 50 | 21 |
P value = 0.00734 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
9P LOSS MUTATED | 42 | 18 | 8 |
9P LOSS WILD-TYPE | 44 | 29 | 32 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
10P LOSS MUTATED | 8 | 17 | 11 |
10P LOSS WILD-TYPE | 77 | 58 | 13 |
P value = 5e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
10Q LOSS MUTATED | 5 | 15 | 10 |
10Q LOSS WILD-TYPE | 80 | 60 | 14 |
P value = 0.0172 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
10Q LOSS MUTATED | 6 | 19 | 4 |
10Q LOSS WILD-TYPE | 68 | 56 | 24 |
P value = 0.00141 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
11P LOSS MUTATED | 2 | 9 | 6 |
11P LOSS WILD-TYPE | 83 | 66 | 18 |
P value = 0.00068 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
11Q LOSS MUTATED | 2 | 7 | 7 |
11Q LOSS WILD-TYPE | 83 | 68 | 17 |
P value = 0.00114 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
11Q LOSS MUTATED | 1 | 0 | 0 | 5 | 2 |
11Q LOSS WILD-TYPE | 46 | 25 | 16 | 11 | 16 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
12P LOSS MUTATED | 3 | 17 | 0 |
12P LOSS WILD-TYPE | 82 | 58 | 24 |
P value = 0.0355 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
12P LOSS MUTATED | 7 | 1 | 9 | 3 |
12P LOSS WILD-TYPE | 38 | 46 | 41 | 38 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
12P LOSS MUTATED | 12 | 0 | 0 | 0 | 0 |
12P LOSS WILD-TYPE | 27 | 25 | 20 | 15 | 23 |
P value = 0.00043 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
12P LOSS MUTATED | 12 | 0 | 0 | 0 | 0 |
12P LOSS WILD-TYPE | 35 | 25 | 16 | 16 | 18 |
P value = 0.00826 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
12P LOSS MUTATED | 5 | 14 | 0 |
12P LOSS WILD-TYPE | 69 | 61 | 28 |
P value = 0.00106 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
12P LOSS MUTATED | 18 | 0 | 1 |
12P LOSS WILD-TYPE | 84 | 42 | 32 |
P value = 0.00178 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
12P LOSS MUTATED | 16 | 1 | 1 |
12P LOSS WILD-TYPE | 70 | 46 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
12Q LOSS MUTATED | 2 | 25 | 1 |
12Q LOSS WILD-TYPE | 83 | 50 | 23 |
P value = 0.00452 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
12Q LOSS MUTATED | 12 | 1 | 1 | 0 | 2 |
12Q LOSS WILD-TYPE | 27 | 24 | 19 | 15 | 21 |
P value = 0.00239 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
12Q LOSS MUTATED | 8 | 18 | 0 |
12Q LOSS WILD-TYPE | 66 | 57 | 28 |
P value = 0.0245 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
12Q LOSS MUTATED | 17 | 7 | 1 |
12Q LOSS WILD-TYPE | 69 | 40 | 39 |
P value = 0.00061 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
13Q LOSS MUTATED | 2 | 12 | 6 |
13Q LOSS WILD-TYPE | 83 | 63 | 18 |
P value = 0.00931 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
13Q LOSS MUTATED | 6 | 2 | 11 | 1 |
13Q LOSS WILD-TYPE | 39 | 45 | 39 | 40 |
P value = 0.0027 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
13Q LOSS MUTATED | 16 | 2 | 1 |
13Q LOSS WILD-TYPE | 67 | 46 | 45 |
P value = 0.0238 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
13Q LOSS MUTATED | 13 | 1 | 4 | 1 |
13Q LOSS WILD-TYPE | 56 | 39 | 31 | 32 |
P value = 0.0124 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
13Q LOSS MUTATED | 17 | 1 | 1 |
13Q LOSS WILD-TYPE | 85 | 41 | 32 |
P value = 0.00182 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
13Q LOSS MUTATED | 13 | 1 | 5 |
13Q LOSS WILD-TYPE | 56 | 66 | 32 |
P value = 0.0227 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
14Q LOSS MUTATED | 9 | 1 | 4 | 2 |
14Q LOSS WILD-TYPE | 36 | 46 | 46 | 39 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
15Q LOSS MUTATED | 3 | 20 | 7 |
15Q LOSS WILD-TYPE | 82 | 55 | 17 |
P value = 0.0089 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
15Q LOSS MUTATED | 9 | 2 | 14 | 5 |
15Q LOSS WILD-TYPE | 36 | 45 | 36 | 36 |
P value = 0.0215 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
15Q LOSS MUTATED | 21 | 4 | 5 |
15Q LOSS WILD-TYPE | 62 | 44 | 41 |
P value = 0.00198 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
15Q LOSS MUTATED | 8 | 21 | 1 |
15Q LOSS WILD-TYPE | 66 | 54 | 27 |
P value = 0.00665 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
15Q LOSS MUTATED | 25 | 2 | 3 |
15Q LOSS WILD-TYPE | 77 | 40 | 30 |
P value = 0.00353 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
15Q LOSS MUTATED | 22 | 4 | 2 |
15Q LOSS WILD-TYPE | 64 | 43 | 38 |
P value = 0.00825 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
16P LOSS MUTATED | 2 | 4 | 5 |
16P LOSS WILD-TYPE | 83 | 71 | 19 |
P value = 0.0223 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
16P LOSS MUTATED | 0 | 0 | 1 | 2 | 3 |
16P LOSS WILD-TYPE | 39 | 25 | 19 | 13 | 20 |
P value = 0.00923 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 47 | 25 | 16 | 16 | 18 |
16P LOSS MUTATED | 0 | 0 | 1 | 2 | 3 |
16P LOSS WILD-TYPE | 47 | 25 | 15 | 14 | 15 |
P value = 0.0239 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
16Q LOSS MUTATED | 3 | 5 | 5 |
16Q LOSS WILD-TYPE | 82 | 70 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
17P LOSS MUTATED | 7 | 65 | 8 |
17P LOSS WILD-TYPE | 78 | 10 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
17P LOSS MUTATED | 28 | 7 | 37 | 8 |
17P LOSS WILD-TYPE | 17 | 40 | 13 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
17P LOSS MUTATED | 49 | 22 | 6 |
17P LOSS WILD-TYPE | 34 | 26 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
17P LOSS MUTATED | 37 | 39 | 1 |
17P LOSS WILD-TYPE | 37 | 36 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
17P LOSS MUTATED | 47 | 16 | 8 | 6 |
17P LOSS WILD-TYPE | 22 | 24 | 27 | 27 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
17P LOSS MUTATED | 58 | 14 | 5 |
17P LOSS WILD-TYPE | 44 | 28 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
17P LOSS MUTATED | 46 | 13 | 17 |
17P LOSS WILD-TYPE | 23 | 54 | 20 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
17P LOSS MUTATED | 49 | 22 | 5 |
17P LOSS WILD-TYPE | 37 | 25 | 35 |
P value = 0.00075 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
17Q LOSS MUTATED | 3 | 17 | 2 |
17Q LOSS WILD-TYPE | 82 | 58 | 22 |
P value = 0.0107 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
17Q LOSS MUTATED | 11 | 2 | 0 | 3 | 1 |
17Q LOSS WILD-TYPE | 28 | 23 | 20 | 12 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
18Q LOSS MUTATED | 36 | 62 | 8 |
18Q LOSS WILD-TYPE | 49 | 13 | 16 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
18Q LOSS MUTATED | 31 | 18 | 38 | 19 |
18Q LOSS WILD-TYPE | 14 | 29 | 12 | 22 |
P value = 0.00192 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
18Q LOSS MUTATED | 57 | 29 | 17 |
18Q LOSS WILD-TYPE | 26 | 19 | 29 |
P value = 0.00521 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
18Q LOSS MUTATED | 43 | 51 | 9 |
18Q LOSS WILD-TYPE | 31 | 24 | 19 |
P value = 0.0147 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
18Q LOSS MUTATED | 50 | 21 | 18 | 14 |
18Q LOSS WILD-TYPE | 19 | 19 | 17 | 19 |
P value = 0.00321 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
18Q LOSS MUTATED | 70 | 20 | 13 |
18Q LOSS WILD-TYPE | 32 | 22 | 20 |
P value = 0.0485 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
18Q LOSS MUTATED | 48 | 33 | 20 |
18Q LOSS WILD-TYPE | 21 | 34 | 17 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
18Q LOSS MUTATED | 59 | 31 | 11 |
18Q LOSS WILD-TYPE | 27 | 16 | 29 |
P value = 0.00134 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
19P LOSS MUTATED | 2 | 12 | 5 |
19P LOSS WILD-TYPE | 83 | 63 | 19 |
P value = 0.0223 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
19P LOSS MUTATED | 8 | 1 | 8 | 2 |
19P LOSS WILD-TYPE | 37 | 46 | 42 | 39 |
P value = 0.0231 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
19P LOSS MUTATED | 6 | 13 | 0 |
19P LOSS WILD-TYPE | 68 | 62 | 28 |
P value = 0.00666 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
19P LOSS MUTATED | 17 | 2 | 0 |
19P LOSS WILD-TYPE | 85 | 40 | 33 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
19P LOSS MUTATED | 15 | 1 | 2 |
19P LOSS WILD-TYPE | 54 | 66 | 35 |
P value = 0.0212 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
19P LOSS MUTATED | 12 | 6 | 0 |
19P LOSS WILD-TYPE | 74 | 41 | 40 |
P value = 0.00702 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
19Q LOSS MUTATED | 1 | 7 | 4 |
19Q LOSS WILD-TYPE | 84 | 68 | 20 |
P value = 0.0395 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
19Q LOSS MUTATED | 10 | 1 | 1 |
19Q LOSS WILD-TYPE | 73 | 47 | 45 |
P value = 0.0146 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 74 | 75 | 28 |
19Q LOSS MUTATED | 2 | 10 | 0 |
19Q LOSS WILD-TYPE | 72 | 65 | 28 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
20P LOSS MUTATED | 2 | 16 | 2 |
20P LOSS WILD-TYPE | 83 | 59 | 22 |
P value = 0.0457 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
20P LOSS MUTATED | 6 | 2 | 10 | 2 |
20P LOSS WILD-TYPE | 39 | 45 | 40 | 39 |
P value = 0.00668 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
20P LOSS MUTATED | 11 | 8 | 0 |
20P LOSS WILD-TYPE | 72 | 40 | 46 |
P value = 0.0376 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 40 | 35 | 33 |
20P LOSS MUTATED | 11 | 6 | 2 | 0 |
20P LOSS WILD-TYPE | 58 | 34 | 33 | 33 |
P value = 0.0406 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
20P LOSS MUTATED | 15 | 4 | 0 |
20P LOSS WILD-TYPE | 87 | 38 | 33 |
P value = 0.00212 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
20P LOSS MUTATED | 11 | 1 | 7 |
20P LOSS WILD-TYPE | 58 | 66 | 30 |
P value = 0.0142 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
20P LOSS MUTATED | 11 | 8 | 0 |
20P LOSS WILD-TYPE | 75 | 39 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
21Q LOSS MUTATED | 11 | 38 | 9 |
21Q LOSS WILD-TYPE | 74 | 37 | 15 |
P value = 0.0233 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
21Q LOSS MUTATED | 17 | 9 | 22 | 9 |
21Q LOSS WILD-TYPE | 28 | 38 | 28 | 32 |
P value = 0.022 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 83 | 48 | 46 |
21Q LOSS MUTATED | 30 | 18 | 7 |
21Q LOSS WILD-TYPE | 53 | 30 | 39 |
P value = 0.0324 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
21Q LOSS MUTATED | 39 | 11 | 5 |
21Q LOSS WILD-TYPE | 63 | 31 | 28 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
21Q LOSS MUTATED | 31 | 10 | 12 |
21Q LOSS WILD-TYPE | 38 | 57 | 25 |
P value = 0.0366 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
21Q LOSS MUTATED | 29 | 18 | 6 |
21Q LOSS WILD-TYPE | 57 | 29 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
22Q LOSS MUTATED | 7 | 30 | 9 |
22Q LOSS WILD-TYPE | 78 | 45 | 15 |
P value = 0.0049 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
22Q LOSS MUTATED | 18 | 7 | 16 | 5 |
22Q LOSS WILD-TYPE | 27 | 40 | 34 | 36 |
P value = 0.0397 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 42 | 33 |
22Q LOSS MUTATED | 32 | 6 | 5 |
22Q LOSS WILD-TYPE | 70 | 36 | 28 |
P value = 0.00101 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 67 | 37 |
22Q LOSS MUTATED | 22 | 7 | 14 |
22Q LOSS WILD-TYPE | 47 | 60 | 23 |
P value = 0.0285 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 47 | 40 |
22Q LOSS MUTATED | 27 | 12 | 4 |
22Q LOSS WILD-TYPE | 59 | 35 | 36 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
XP LOSS MUTATED | 3 | 18 | 6 |
XP LOSS WILD-TYPE | 82 | 57 | 18 |
P value = 0.0342 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
XP LOSS MUTATED | 9 | 0 | 1 | 1 | 4 |
XP LOSS WILD-TYPE | 30 | 25 | 19 | 14 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 75 | 24 |
XQ LOSS MUTATED | 0 | 13 | 5 |
XQ LOSS WILD-TYPE | 85 | 62 | 19 |
P value = 0.0434 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 45 | 47 | 50 | 41 |
XQ LOSS MUTATED | 7 | 5 | 6 | 0 |
XQ LOSS WILD-TYPE | 38 | 42 | 44 | 41 |
P value = 0.0078 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 25 | 20 | 15 | 23 |
XQ LOSS MUTATED | 8 | 0 | 0 | 0 | 1 |
XQ LOSS WILD-TYPE | 31 | 25 | 20 | 15 | 22 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/19783029/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/20139891/PAAD-TP.transferedmergedcluster.txt
-
Number of patients = 184
-
Number of significantly arm-level cnvs = 81
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.