This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 15 genes and 10 molecular subtypes across 35 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.
-
No gene mutations related to molecuar subtypes.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
PBRM1 | 8 (23%) | 27 |
0.553 (1.00) |
0.117 (0.88) |
0.852 (1.00) |
0.23 (0.886) |
0.138 (0.88) |
0.318 (0.908) |
0.807 (1.00) |
0.224 (0.886) |
0.563 (1.00) |
0.434 (0.996) |
HLA-B | 5 (14%) | 30 |
0.361 (0.968) |
0.0128 (0.418) |
0.588 (1.00) |
0.436 (0.996) |
0.116 (0.88) |
0.184 (0.886) |
0.0071 (0.355) |
0.0178 (0.418) |
0.727 (1.00) |
0.0563 (0.768) |
MLL3 | 7 (20%) | 28 |
0.12 (0.88) |
0.314 (0.908) |
0.319 (0.908) |
1 (1.00) |
0.916 (1.00) |
0.979 (1.00) |
0.164 (0.88) |
0.74 (1.00) |
0.819 (1.00) |
0.223 (0.886) |
FTH1 | 3 (9%) | 32 |
0.124 (0.88) |
0.0466 (0.7) |
0.0924 (0.88) |
0.585 (1.00) |
0.327 (0.908) |
0.23 (0.886) |
1 (1.00) |
0.661 (1.00) |
1 (1.00) |
0.933 (1.00) |
TP53 | 5 (14%) | 30 |
0.686 (1.00) |
1 (1.00) |
0.521 (1.00) |
0.756 (1.00) |
0.867 (1.00) |
0.984 (1.00) |
1 (1.00) |
0.854 (1.00) |
1 (1.00) |
0.733 (1.00) |
ARID1A | 5 (14%) | 30 |
1 (1.00) |
0.592 (1.00) |
0.522 (1.00) |
0.209 (0.886) |
0.109 (0.88) |
0.649 (1.00) |
1 (1.00) |
0.151 (0.88) |
0.349 (0.952) |
0.29 (0.908) |
DDHD1 | 4 (11%) | 31 |
0.449 (0.996) |
0.656 (1.00) |
0.472 (0.996) |
0.468 (0.996) |
0.871 (1.00) |
0.913 (1.00) |
0.646 (1.00) |
0.206 (0.886) |
0.469 (0.996) |
0.214 (0.886) |
MUC2 | 7 (20%) | 28 |
0.105 (0.88) |
0.654 (1.00) |
0.279 (0.908) |
0.398 (0.996) |
0.437 (0.996) |
0.151 (0.88) |
0.932 (1.00) |
0.201 (0.886) |
0.568 (1.00) |
0.853 (1.00) |
IDH1 | 4 (11%) | 31 |
0.282 (0.908) |
0.00223 (0.334) |
1 (1.00) |
0.585 (1.00) |
0.296 (0.908) |
0.448 (0.996) |
0.00569 (0.355) |
0.0386 (0.7) |
0.184 (0.886) |
0.0195 (0.418) |
MUC21 | 3 (9%) | 32 |
0.666 (1.00) |
0.767 (1.00) |
0.262 (0.908) |
0.0443 (0.7) |
1 (1.00) |
0.737 (1.00) |
1 (1.00) |
0.933 (1.00) |
||
CLIP4 | 4 (11%) | 31 |
0.815 (1.00) |
0.538 (1.00) |
0.647 (1.00) |
0.887 (1.00) |
0.798 (1.00) |
0.914 (1.00) |
0.905 (1.00) |
0.153 (0.88) |
1 (1.00) |
0.747 (1.00) |
BAP1 | 6 (17%) | 29 |
0.6 (1.00) |
0.732 (1.00) |
0.759 (1.00) |
0.589 (1.00) |
0.507 (1.00) |
0.412 (0.996) |
0.647 (1.00) |
0.444 (0.996) |
0.242 (0.908) |
0.282 (0.908) |
CDC27 | 5 (14%) | 30 |
0.905 (1.00) |
0.834 (1.00) |
0.322 (0.908) |
0.0677 (0.847) |
0.705 (1.00) |
0.427 (0.996) |
0.371 (0.977) |
0.148 (0.88) |
0.251 (0.908) |
0.102 (0.88) |
FAM35A | 3 (9%) | 32 |
0.279 (0.908) |
1 (1.00) |
1 (1.00) |
0.793 (1.00) |
0.618 (1.00) |
0.693 (1.00) |
0.197 (0.886) |
0.0163 (0.418) |
||
PAXIP1 | 4 (11%) | 31 |
0.164 (0.88) |
0.814 (1.00) |
1 (1.00) |
0.772 (1.00) |
0.478 (0.996) |
0.3 (0.908) |
0.645 (1.00) |
0.475 (0.996) |
0.0779 (0.88) |
0.398 (0.996) |
P value = 0.553 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
PBRM1 MUTATED | 2 | 2 | 3 | 1 |
PBRM1 WILD-TYPE | 12 | 6 | 4 | 5 |
P value = 0.117 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
PBRM1 MUTATED | 1 | 2 | 5 |
PBRM1 WILD-TYPE | 13 | 7 | 7 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
PBRM1 MUTATED | 2 | 1 | 3 |
PBRM1 WILD-TYPE | 8 | 7 | 8 |
P value = 0.23 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
PBRM1 MUTATED | 2 | 1 | 3 | 0 |
PBRM1 WILD-TYPE | 4 | 6 | 5 | 8 |
P value = 0.138 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
PBRM1 MUTATED | 0 | 0 | 1 | 4 | 2 | 1 |
PBRM1 WILD-TYPE | 6 | 3 | 4 | 2 | 7 | 5 |
P value = 0.318 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
PBRM1 MUTATED | 0 | 0 | 3 | 2 | 2 | 1 | 0 |
PBRM1 WILD-TYPE | 4 | 5 | 2 | 7 | 3 | 4 | 2 |
P value = 0.807 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
PBRM1 MUTATED | 1 | 1 | 3 | 3 |
PBRM1 WILD-TYPE | 9 | 4 | 7 | 7 |
P value = 0.224 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
PBRM1 MUTATED | 0 | 3 | 2 | 1 | 2 | 0 |
PBRM1 WILD-TYPE | 8 | 7 | 2 | 3 | 3 | 4 |
P value = 0.563 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
PBRM1 MUTATED | 1 | 0 | 3 | 2 | 2 |
PBRM1 WILD-TYPE | 7 | 5 | 4 | 5 | 6 |
P value = 0.434 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
PBRM1 MUTATED | 0 | 3 | 3 | 1 | 1 |
PBRM1 WILD-TYPE | 6 | 4 | 6 | 6 | 5 |
P value = 0.361 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
HLA-B MUTATED | 2 | 0 | 1 | 2 |
HLA-B WILD-TYPE | 12 | 8 | 6 | 4 |
P value = 0.0128 (Fisher's exact test), Q value = 0.42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
HLA-B MUTATED | 1 | 4 | 0 |
HLA-B WILD-TYPE | 13 | 5 | 12 |
P value = 0.588 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
HLA-B MUTATED | 1 | 1 | 3 |
HLA-B WILD-TYPE | 9 | 7 | 8 |
P value = 0.436 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
HLA-B MUTATED | 0 | 1 | 1 | 3 |
HLA-B WILD-TYPE | 6 | 6 | 7 | 5 |
P value = 0.116 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
HLA-B MUTATED | 0 | 0 | 0 | 1 | 4 | 0 |
HLA-B WILD-TYPE | 6 | 3 | 5 | 5 | 5 | 6 |
P value = 0.184 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
HLA-B MUTATED | 0 | 0 | 0 | 4 | 1 | 0 | 0 |
HLA-B WILD-TYPE | 4 | 5 | 5 | 5 | 4 | 5 | 2 |
P value = 0.0071 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
HLA-B MUTATED | 0 | 3 | 0 | 2 |
HLA-B WILD-TYPE | 10 | 2 | 10 | 8 |
P value = 0.0178 (Fisher's exact test), Q value = 0.42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
HLA-B MUTATED | 0 | 0 | 0 | 2 | 1 | 2 |
HLA-B WILD-TYPE | 8 | 10 | 4 | 2 | 4 | 2 |
P value = 0.727 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
HLA-B MUTATED | 0 | 1 | 1 | 1 | 2 |
HLA-B WILD-TYPE | 8 | 4 | 6 | 6 | 6 |
P value = 0.0563 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
HLA-B MUTATED | 0 | 1 | 0 | 1 | 3 |
HLA-B WILD-TYPE | 6 | 6 | 9 | 6 | 3 |
P value = 0.12 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
MLL3 MUTATED | 1 | 1 | 2 | 3 |
MLL3 WILD-TYPE | 13 | 7 | 5 | 3 |
P value = 0.314 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
MLL3 MUTATED | 1 | 3 | 3 |
MLL3 WILD-TYPE | 13 | 6 | 9 |
P value = 0.319 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
MLL3 MUTATED | 1 | 1 | 4 |
MLL3 WILD-TYPE | 9 | 7 | 7 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
MLL3 MUTATED | 1 | 1 | 2 | 2 |
MLL3 WILD-TYPE | 5 | 6 | 6 | 6 |
P value = 0.916 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
MLL3 MUTATED | 1 | 1 | 1 | 2 | 1 | 1 |
MLL3 WILD-TYPE | 5 | 2 | 4 | 4 | 8 | 5 |
P value = 0.979 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
MLL3 MUTATED | 1 | 1 | 1 | 1 | 2 | 1 | 0 |
MLL3 WILD-TYPE | 3 | 4 | 4 | 8 | 3 | 4 | 2 |
P value = 0.164 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
MLL3 MUTATED | 4 | 1 | 0 | 2 |
MLL3 WILD-TYPE | 6 | 4 | 10 | 8 |
P value = 0.74 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
MLL3 MUTATED | 2 | 1 | 1 | 1 | 2 | 0 |
MLL3 WILD-TYPE | 6 | 9 | 3 | 3 | 3 | 4 |
P value = 0.819 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
MLL3 MUTATED | 3 | 1 | 1 | 1 | 1 |
MLL3 WILD-TYPE | 5 | 4 | 6 | 6 | 7 |
P value = 0.223 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
MLL3 MUTATED | 3 | 2 | 1 | 0 | 1 |
MLL3 WILD-TYPE | 3 | 5 | 8 | 7 | 5 |
P value = 0.124 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
FTH1 MUTATED | 0 | 1 | 2 | 0 |
FTH1 WILD-TYPE | 14 | 7 | 5 | 6 |
P value = 0.0466 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
FTH1 MUTATED | 0 | 0 | 3 |
FTH1 WILD-TYPE | 14 | 9 | 9 |
P value = 0.0924 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
FTH1 MUTATED | 0 | 0 | 3 |
FTH1 WILD-TYPE | 10 | 8 | 8 |
P value = 0.585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
FTH1 MUTATED | 0 | 0 | 1 | 2 |
FTH1 WILD-TYPE | 6 | 7 | 7 | 6 |
P value = 0.327 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
FTH1 MUTATED | 0 | 1 | 0 | 1 | 0 | 1 |
FTH1 WILD-TYPE | 6 | 2 | 5 | 5 | 9 | 5 |
P value = 0.23 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
FTH1 MUTATED | 0 | 0 | 1 | 0 | 0 | 1 | 1 |
FTH1 WILD-TYPE | 4 | 5 | 4 | 9 | 5 | 4 | 1 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
FTH1 MUTATED | 1 | 0 | 1 | 1 |
FTH1 WILD-TYPE | 9 | 5 | 9 | 9 |
P value = 0.661 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
FTH1 MUTATED | 0 | 1 | 1 | 0 | 1 | 0 |
FTH1 WILD-TYPE | 8 | 9 | 3 | 4 | 4 | 4 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
FTH1 MUTATED | 1 | 0 | 0 | 1 | 1 |
FTH1 WILD-TYPE | 7 | 5 | 7 | 6 | 7 |
P value = 0.933 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
FTH1 MUTATED | 1 | 0 | 1 | 1 | 0 |
FTH1 WILD-TYPE | 5 | 7 | 8 | 6 | 6 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
TP53 MUTATED | 2 | 1 | 2 | 0 |
TP53 WILD-TYPE | 12 | 7 | 5 | 6 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
TP53 MUTATED | 2 | 1 | 2 |
TP53 WILD-TYPE | 12 | 8 | 10 |
P value = 0.521 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
TP53 MUTATED | 2 | 0 | 2 |
TP53 WILD-TYPE | 8 | 8 | 9 |
P value = 0.756 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
TP53 MUTATED | 1 | 0 | 1 | 2 |
TP53 WILD-TYPE | 5 | 7 | 7 | 6 |
P value = 0.867 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
TP53 MUTATED | 2 | 0 | 0 | 1 | 1 | 1 |
TP53 WILD-TYPE | 4 | 3 | 5 | 5 | 8 | 5 |
P value = 0.984 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
TP53 MUTATED | 1 | 0 | 1 | 1 | 1 | 1 | 0 |
TP53 WILD-TYPE | 3 | 5 | 4 | 8 | 4 | 4 | 2 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
TP53 MUTATED | 1 | 1 | 2 | 1 |
TP53 WILD-TYPE | 9 | 4 | 8 | 9 |
P value = 0.854 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
TP53 MUTATED | 1 | 2 | 1 | 1 | 0 | 0 |
TP53 WILD-TYPE | 7 | 8 | 3 | 3 | 5 | 4 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
TP53 MUTATED | 1 | 1 | 1 | 1 | 1 |
TP53 WILD-TYPE | 7 | 4 | 6 | 6 | 7 |
P value = 0.733 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
TP53 MUTATED | 1 | 2 | 1 | 0 | 1 |
TP53 WILD-TYPE | 5 | 5 | 8 | 7 | 5 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
ARID1A MUTATED | 2 | 1 | 1 | 1 |
ARID1A WILD-TYPE | 12 | 7 | 6 | 5 |
P value = 0.592 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
ARID1A MUTATED | 1 | 2 | 2 |
ARID1A WILD-TYPE | 13 | 7 | 10 |
P value = 0.522 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
ARID1A MUTATED | 2 | 0 | 2 |
ARID1A WILD-TYPE | 8 | 8 | 9 |
P value = 0.209 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
ARID1A MUTATED | 0 | 0 | 3 | 1 |
ARID1A WILD-TYPE | 6 | 7 | 5 | 7 |
P value = 0.109 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
ARID1A MUTATED | 0 | 0 | 0 | 3 | 2 | 0 |
ARID1A WILD-TYPE | 6 | 3 | 5 | 3 | 7 | 6 |
P value = 0.649 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
ARID1A MUTATED | 0 | 0 | 2 | 2 | 1 | 0 | 0 |
ARID1A WILD-TYPE | 4 | 5 | 3 | 7 | 4 | 5 | 2 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
ARID1A MUTATED | 1 | 1 | 1 | 2 |
ARID1A WILD-TYPE | 9 | 4 | 9 | 8 |
P value = 0.151 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
ARID1A MUTATED | 0 | 1 | 2 | 1 | 0 | 1 |
ARID1A WILD-TYPE | 8 | 9 | 2 | 3 | 5 | 3 |
P value = 0.349 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
ARID1A MUTATED | 1 | 0 | 0 | 1 | 3 |
ARID1A WILD-TYPE | 7 | 5 | 7 | 6 | 5 |
P value = 0.29 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
ARID1A MUTATED | 0 | 0 | 1 | 2 | 2 |
ARID1A WILD-TYPE | 6 | 7 | 8 | 5 | 4 |
P value = 0.449 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
DDHD1 MUTATED | 1 | 1 | 2 | 0 |
DDHD1 WILD-TYPE | 13 | 7 | 5 | 6 |
P value = 0.656 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
DDHD1 MUTATED | 1 | 2 | 1 |
DDHD1 WILD-TYPE | 13 | 7 | 11 |
P value = 0.472 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
DDHD1 MUTATED | 0 | 1 | 2 |
DDHD1 WILD-TYPE | 10 | 7 | 9 |
P value = 0.468 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
DDHD1 MUTATED | 0 | 1 | 0 | 2 |
DDHD1 WILD-TYPE | 6 | 6 | 8 | 6 |
P value = 0.871 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
DDHD1 MUTATED | 0 | 0 | 0 | 1 | 2 | 1 |
DDHD1 WILD-TYPE | 6 | 3 | 5 | 5 | 7 | 5 |
P value = 0.913 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
DDHD1 MUTATED | 0 | 0 | 1 | 2 | 0 | 1 | 0 |
DDHD1 WILD-TYPE | 4 | 5 | 4 | 7 | 5 | 4 | 2 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
DDHD1 MUTATED | 2 | 1 | 0 | 1 |
DDHD1 WILD-TYPE | 8 | 4 | 10 | 9 |
P value = 0.206 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
DDHD1 MUTATED | 0 | 0 | 1 | 1 | 1 | 1 |
DDHD1 WILD-TYPE | 8 | 10 | 3 | 3 | 4 | 3 |
P value = 0.469 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
DDHD1 MUTATED | 2 | 1 | 0 | 0 | 1 |
DDHD1 WILD-TYPE | 6 | 4 | 7 | 7 | 7 |
P value = 0.214 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
DDHD1 MUTATED | 1 | 0 | 0 | 1 | 2 |
DDHD1 WILD-TYPE | 5 | 7 | 9 | 6 | 4 |
P value = 0.105 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
MUC2 MUTATED | 5 | 0 | 2 | 0 |
MUC2 WILD-TYPE | 9 | 8 | 5 | 6 |
P value = 0.654 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
MUC2 MUTATED | 4 | 1 | 2 |
MUC2 WILD-TYPE | 10 | 8 | 10 |
P value = 0.279 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
MUC2 MUTATED | 3 | 0 | 1 |
MUC2 WILD-TYPE | 7 | 8 | 10 |
P value = 0.398 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
MUC2 MUTATED | 2 | 0 | 1 | 1 |
MUC2 WILD-TYPE | 4 | 7 | 7 | 7 |
P value = 0.437 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
MUC2 MUTATED | 3 | 0 | 1 | 1 | 2 | 0 |
MUC2 WILD-TYPE | 3 | 3 | 4 | 5 | 7 | 6 |
P value = 0.151 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
MUC2 MUTATED | 3 | 1 | 0 | 2 | 1 | 0 | 0 |
MUC2 WILD-TYPE | 1 | 4 | 5 | 7 | 4 | 5 | 2 |
P value = 0.932 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
MUC2 MUTATED | 3 | 1 | 1 | 2 |
MUC2 WILD-TYPE | 7 | 4 | 9 | 8 |
P value = 0.201 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
MUC2 MUTATED | 4 | 1 | 1 | 1 | 0 | 0 |
MUC2 WILD-TYPE | 4 | 9 | 3 | 3 | 5 | 4 |
P value = 0.568 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
MUC2 MUTATED | 3 | 1 | 1 | 0 | 2 |
MUC2 WILD-TYPE | 5 | 4 | 6 | 7 | 6 |
P value = 0.853 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
MUC2 MUTATED | 2 | 1 | 1 | 2 | 1 |
MUC2 WILD-TYPE | 4 | 6 | 8 | 5 | 5 |
P value = 0.282 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
IDH1 MUTATED | 1 | 0 | 2 | 1 |
IDH1 WILD-TYPE | 13 | 8 | 5 | 5 |
P value = 0.00223 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
IDH1 MUTATED | 0 | 4 | 0 |
IDH1 WILD-TYPE | 14 | 5 | 12 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
IDH1 MUTATED | 1 | 1 | 2 |
IDH1 WILD-TYPE | 9 | 7 | 9 |
P value = 0.585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
IDH1 MUTATED | 1 | 1 | 0 | 2 |
IDH1 WILD-TYPE | 5 | 6 | 8 | 6 |
P value = 0.296 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
IDH1 MUTATED | 0 | 0 | 0 | 0 | 3 | 1 |
IDH1 WILD-TYPE | 6 | 3 | 5 | 6 | 6 | 5 |
P value = 0.448 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
IDH1 MUTATED | 0 | 0 | 0 | 3 | 0 | 1 | 0 |
IDH1 WILD-TYPE | 4 | 5 | 5 | 6 | 5 | 4 | 2 |
P value = 0.00569 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
IDH1 MUTATED | 0 | 3 | 0 | 1 |
IDH1 WILD-TYPE | 10 | 2 | 10 | 9 |
P value = 0.0386 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
IDH1 MUTATED | 0 | 0 | 0 | 2 | 1 | 1 |
IDH1 WILD-TYPE | 8 | 10 | 4 | 2 | 4 | 3 |
P value = 0.184 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
IDH1 MUTATED | 0 | 2 | 1 | 0 | 1 |
IDH1 WILD-TYPE | 8 | 3 | 6 | 7 | 7 |
P value = 0.0195 (Fisher's exact test), Q value = 0.42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
IDH1 MUTATED | 0 | 0 | 0 | 1 | 3 |
IDH1 WILD-TYPE | 6 | 7 | 9 | 6 | 3 |
P value = 0.666 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
MUC21 MUTATED | 2 | 0 | 1 | 0 |
MUC21 WILD-TYPE | 12 | 8 | 6 | 6 |
P value = 0.767 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
MUC21 MUTATED | 2 | 0 | 1 |
MUC21 WILD-TYPE | 12 | 9 | 11 |
P value = 0.262 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
MUC21 MUTATED | 2 | 0 | 0 | 1 | 0 | 0 |
MUC21 WILD-TYPE | 4 | 3 | 5 | 5 | 9 | 6 |
P value = 0.0443 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
MUC21 MUTATED | 2 | 0 | 1 | 0 | 0 | 0 | 0 |
MUC21 WILD-TYPE | 2 | 5 | 4 | 9 | 5 | 5 | 2 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
MUC21 MUTATED | 1 | 0 | 1 | 1 |
MUC21 WILD-TYPE | 9 | 5 | 9 | 9 |
P value = 0.737 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
MUC21 MUTATED | 2 | 1 | 0 | 0 | 0 | 0 |
MUC21 WILD-TYPE | 6 | 9 | 4 | 4 | 5 | 4 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
MUC21 MUTATED | 1 | 0 | 0 | 1 | 1 |
MUC21 WILD-TYPE | 7 | 5 | 7 | 6 | 7 |
P value = 0.933 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
MUC21 MUTATED | 1 | 0 | 1 | 1 | 0 |
MUC21 WILD-TYPE | 5 | 7 | 8 | 6 | 6 |
P value = 0.815 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
CLIP4 MUTATED | 2 | 1 | 0 | 1 |
CLIP4 WILD-TYPE | 12 | 7 | 7 | 5 |
P value = 0.538 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
CLIP4 MUTATED | 2 | 0 | 2 |
CLIP4 WILD-TYPE | 12 | 9 | 10 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
CLIP4 MUTATED | 1 | 2 | 1 |
CLIP4 WILD-TYPE | 9 | 6 | 10 |
P value = 0.887 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
CLIP4 MUTATED | 0 | 1 | 1 | 2 |
CLIP4 WILD-TYPE | 6 | 6 | 7 | 6 |
P value = 0.798 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
CLIP4 MUTATED | 0 | 0 | 1 | 0 | 2 | 1 |
CLIP4 WILD-TYPE | 6 | 3 | 4 | 6 | 7 | 5 |
P value = 0.914 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
CLIP4 MUTATED | 0 | 0 | 1 | 2 | 0 | 1 | 0 |
CLIP4 WILD-TYPE | 4 | 5 | 4 | 7 | 5 | 4 | 2 |
P value = 0.905 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
CLIP4 MUTATED | 1 | 0 | 2 | 1 |
CLIP4 WILD-TYPE | 9 | 5 | 8 | 9 |
P value = 0.153 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
CLIP4 MUTATED | 0 | 2 | 0 | 0 | 0 | 2 |
CLIP4 WILD-TYPE | 8 | 8 | 4 | 4 | 5 | 2 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
CLIP4 MUTATED | 1 | 0 | 1 | 1 | 1 |
CLIP4 WILD-TYPE | 7 | 5 | 6 | 6 | 7 |
P value = 0.747 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
CLIP4 MUTATED | 0 | 0 | 2 | 1 | 1 |
CLIP4 WILD-TYPE | 6 | 7 | 7 | 6 | 5 |
P value = 0.6 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
BAP1 MUTATED | 2 | 2 | 2 | 0 |
BAP1 WILD-TYPE | 12 | 6 | 5 | 6 |
P value = 0.732 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
BAP1 MUTATED | 2 | 1 | 3 |
BAP1 WILD-TYPE | 12 | 8 | 9 |
P value = 0.759 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
BAP1 MUTATED | 1 | 0 | 2 |
BAP1 WILD-TYPE | 9 | 8 | 9 |
P value = 0.589 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
BAP1 MUTATED | 0 | 0 | 1 | 2 |
BAP1 WILD-TYPE | 6 | 7 | 7 | 6 |
P value = 0.507 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
BAP1 MUTATED | 0 | 1 | 1 | 2 | 2 | 0 |
BAP1 WILD-TYPE | 6 | 2 | 4 | 4 | 7 | 6 |
P value = 0.412 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
BAP1 MUTATED | 0 | 1 | 2 | 2 | 0 | 0 | 1 |
BAP1 WILD-TYPE | 4 | 4 | 3 | 7 | 5 | 5 | 1 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
BAP1 MUTATED | 1 | 0 | 2 | 3 |
BAP1 WILD-TYPE | 9 | 5 | 8 | 7 |
P value = 0.444 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
BAP1 MUTATED | 1 | 2 | 2 | 0 | 0 | 1 |
BAP1 WILD-TYPE | 7 | 8 | 2 | 4 | 5 | 3 |
P value = 0.242 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
BAP1 MUTATED | 0 | 0 | 1 | 2 | 3 |
BAP1 WILD-TYPE | 8 | 5 | 6 | 5 | 5 |
P value = 0.282 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
BAP1 MUTATED | 0 | 1 | 2 | 3 | 0 |
BAP1 WILD-TYPE | 6 | 6 | 7 | 4 | 6 |
P value = 0.905 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
CDC27 MUTATED | 3 | 1 | 1 | 0 |
CDC27 WILD-TYPE | 11 | 7 | 6 | 6 |
P value = 0.834 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
CDC27 MUTATED | 2 | 2 | 1 |
CDC27 WILD-TYPE | 12 | 7 | 11 |
P value = 0.322 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
CDC27 MUTATED | 3 | 0 | 2 |
CDC27 WILD-TYPE | 7 | 8 | 9 |
P value = 0.0677 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
CDC27 MUTATED | 2 | 0 | 0 | 3 |
CDC27 WILD-TYPE | 4 | 7 | 8 | 5 |
P value = 0.705 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
CDC27 MUTATED | 1 | 1 | 0 | 0 | 2 | 1 |
CDC27 WILD-TYPE | 5 | 2 | 5 | 6 | 7 | 5 |
P value = 0.427 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
CDC27 MUTATED | 1 | 0 | 0 | 2 | 0 | 1 | 1 |
CDC27 WILD-TYPE | 3 | 5 | 5 | 7 | 5 | 4 | 1 |
P value = 0.371 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
CDC27 MUTATED | 1 | 1 | 0 | 3 |
CDC27 WILD-TYPE | 9 | 4 | 10 | 7 |
P value = 0.148 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
CDC27 MUTATED | 1 | 0 | 1 | 0 | 1 | 2 |
CDC27 WILD-TYPE | 7 | 10 | 3 | 4 | 4 | 2 |
P value = 0.251 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
CDC27 MUTATED | 1 | 1 | 0 | 0 | 3 |
CDC27 WILD-TYPE | 7 | 4 | 7 | 7 | 5 |
P value = 0.102 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
CDC27 MUTATED | 1 | 0 | 0 | 3 | 1 |
CDC27 WILD-TYPE | 5 | 7 | 9 | 4 | 5 |
P value = 0.279 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
FAM35A MUTATED | 0 | 1 | 1 | 1 |
FAM35A WILD-TYPE | 14 | 7 | 6 | 5 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
FAM35A MUTATED | 1 | 1 | 1 |
FAM35A WILD-TYPE | 13 | 8 | 11 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
FAM35A MUTATED | 1 | 0 | 0 | 1 | 1 | 0 |
FAM35A WILD-TYPE | 5 | 3 | 5 | 5 | 8 | 6 |
P value = 0.793 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
FAM35A MUTATED | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
FAM35A WILD-TYPE | 3 | 5 | 5 | 8 | 4 | 5 | 2 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
FAM35A MUTATED | 0 | 0 | 2 | 1 |
FAM35A WILD-TYPE | 10 | 5 | 8 | 9 |
P value = 0.693 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
FAM35A MUTATED | 0 | 2 | 0 | 0 | 1 | 0 |
FAM35A WILD-TYPE | 8 | 8 | 4 | 4 | 4 | 4 |
P value = 0.197 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
FAM35A MUTATED | 0 | 0 | 2 | 1 | 0 |
FAM35A WILD-TYPE | 8 | 5 | 5 | 6 | 8 |
P value = 0.0163 (Fisher's exact test), Q value = 0.42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
FAM35A MUTATED | 0 | 3 | 0 | 0 | 0 |
FAM35A WILD-TYPE | 6 | 4 | 9 | 7 | 6 |
P value = 0.164 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 14 | 8 | 7 | 6 |
PAXIP1 MUTATED | 0 | 2 | 1 | 1 |
PAXIP1 WILD-TYPE | 14 | 6 | 6 | 5 |
P value = 0.814 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 9 | 12 |
PAXIP1 MUTATED | 1 | 1 | 2 |
PAXIP1 WILD-TYPE | 13 | 8 | 10 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 10 | 8 | 11 |
PAXIP1 MUTATED | 1 | 1 | 1 |
PAXIP1 WILD-TYPE | 9 | 7 | 10 |
P value = 0.772 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 6 | 7 | 8 | 8 |
PAXIP1 MUTATED | 1 | 1 | 0 | 1 |
PAXIP1 WILD-TYPE | 5 | 6 | 8 | 7 |
P value = 0.478 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 3 | 5 | 6 | 9 | 6 |
PAXIP1 MUTATED | 1 | 1 | 0 | 0 | 2 | 0 |
PAXIP1 WILD-TYPE | 5 | 2 | 5 | 6 | 7 | 6 |
P value = 0.3 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 5 | 5 | 9 | 5 | 5 | 2 |
PAXIP1 MUTATED | 1 | 0 | 0 | 2 | 0 | 0 | 1 |
PAXIP1 WILD-TYPE | 3 | 5 | 5 | 7 | 5 | 5 | 1 |
P value = 0.645 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 5 | 10 | 10 |
PAXIP1 MUTATED | 0 | 1 | 2 | 1 |
PAXIP1 WILD-TYPE | 10 | 4 | 8 | 9 |
P value = 0.475 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 8 | 10 | 4 | 4 | 5 | 4 |
PAXIP1 MUTATED | 0 | 2 | 1 | 1 | 0 | 0 |
PAXIP1 WILD-TYPE | 8 | 8 | 3 | 3 | 5 | 4 |
P value = 0.0779 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 5 | 7 | 7 | 8 |
PAXIP1 MUTATED | 0 | 0 | 3 | 0 | 1 |
PAXIP1 WILD-TYPE | 8 | 5 | 4 | 7 | 7 |
P value = 0.398 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 7 | 9 | 7 | 6 |
PAXIP1 MUTATED | 0 | 2 | 0 | 1 | 1 |
PAXIP1 WILD-TYPE | 6 | 5 | 9 | 6 | 5 |
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Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
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Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CHOL-TP/22563790/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CHOL-TP/22541054/CHOL-TP.transferedmergedcluster.txt
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Number of patients = 35
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Number of significantly mutated genes = 15
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Number of Molecular subtypes = 10
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.