stddata__2014_02_15 Samples Report
- Overview
+ Introduction
- Summary

There were 160 redactions, 2850 replicate aliquots, 23 blacklisted aliquots, and 561 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 9 90 0 80 0 79 0 80 0 90
BLCA 268 197 241 112 242 0 223 0 212 127 28
BRCA 1061 977 1031 19 1024 526 1037 0 994 408 976
CESC 211 98 181 0 189 0 185 0 163 0 39
COAD 437 434 427 69 434 153 432 0 406 331 154
COADREAD 605 602 589 104 596 222 588 0 549 461 223
DLBC 38 21 28 0 28 0 28 0 17 0 0
ESCA 126 39 81 32 93 0 0 0 72 0 0
GBM 607 578 564 0 414 540 160 565 0 214 290
HNSC 517 399 509 108 457 0 424 0 456 212 306
KICH 113 92 66 0 66 0 66 0 66 0 66
KIRC 523 507 504 0 511 72 506 0 492 454 417
KIRP 246 160 172 0 172 16 172 0 172 0 168
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 298 463 52 403 27 365 0 306 258 289
LIHC 217 140 165 0 194 0 166 0 147 0 0
LUAD 563 465 493 120 555 32 488 0 491 237 229
LUSC 493 411 490 0 492 154 482 0 467 195 178
MESO 37 13 37 0 0 0 0 0 0 0 0
OV 592 580 576 0 584 574 296 570 453 412 316
PAAD 103 65 91 0 91 0 75 0 59 0 57
PANCAN12 5974 5398 5719 569 5601 2174 4860 1135 4815 2920 3408
PCPG 179 0 0 0 0 0 0 0 0 0 0
PRAD 381 190 295 115 300 0 297 0 259 164 251
READ 168 168 162 35 162 69 156 0 143 130 69
SARC 170 95 127 0 137 0 103 0 97 0 0
SKCM 386 333 374 119 374 0 372 0 343 205 344
STAD 373 311 332 107 308 0 274 0 323 264 221
THCA 496 484 494 98 496 0 494 0 495 222 402
UCEC 545 482 525 106 532 54 517 0 513 200 248
UCS 57 34 56 0 57 0 57 0 56 0 56
Totals 9715 7780 8771 1092 8589 2217 7633 1135 7470 4033 5391
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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