Broad Institute GDAC Firehose Analyses Workflow Graph
Last Updated: 2015_05_07

Below is a pictorial representation of the workflow Firehose executes upon each disease cohort in our standard Analyses runs. Clicking on a shaded rectangular node in this graph will bring you to the respective Nozzle report for that analysis task. From that report you can also use the Related Reports feature to view the results of the same analysis task executed on different disease cohorts. The pentagonal nodes encapsulate nested workflows–-clicking on them will bring you to the workflow graph for that particular subworkflow. This page was constructed with the help of GraphViz and PyDOT.

Analyses miRseq_Clustering_Consensus_Plus miRseq_Clustering_Consensus_Plus Aggregate_Molecular_Subtype_Clusters Aggregate_Molecular_Subtype_Clusters miRseq_Clustering_Consensus_Plus->Aggregate_Molecular_Subtype_Clusters Correlate_Clinical_vs_mRNA Correlate_Clinical_vs_mRNA Pathway_GSEA_mRNAseq Pathway_GSEA_mRNAseq Methylation_Clustering_CNMF Methylation_Clustering_CNMF Methylation_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters mRNA_Clustering_Consensus_Plus mRNA_Clustering_Consensus_Plus mRNA_Clustering_Consensus_Plus->Aggregate_Molecular_Subtype_Clusters Correlate_Clinical_vs_mRNAseq Correlate_Clinical_vs_mRNAseq Append_CustomClinical Append_CustomClinical Append_CustomClinical->Correlate_Clinical_vs_mRNA Append_CustomClinical->Correlate_Clinical_vs_mRNAseq Correlate_Clinical_vs_miRseq Correlate_Clinical_vs_miRseq Append_CustomClinical->Correlate_Clinical_vs_miRseq Aggregate_AnalysisFeatures Aggregate_AnalysisFeatures Append_CustomClinical->Aggregate_AnalysisFeatures Correlate_Clinical_vs_Methylation Correlate_Clinical_vs_Methylation Append_CustomClinical->Correlate_Clinical_vs_Methylation Correlate_Clinical_vs_Molecular_Subtypes Correlate_Clinical_vs_Molecular_Subtypes Append_CustomClinical->Correlate_Clinical_vs_Molecular_Subtypes Correlate_Clinical_vs_MutationRate Correlate_Clinical_vs_MutationRate Append_CustomClinical->Correlate_Clinical_vs_MutationRate Correlate_Clinical_vs_miR Correlate_Clinical_vs_miR Append_CustomClinical->Correlate_Clinical_vs_miR Correlate_Clinical_vs_CopyNumber_Focal Correlate_Clinical_vs_CopyNumber_Focal Append_CustomClinical->Correlate_Clinical_vs_CopyNumber_Focal Correlate_Clinical_vs_CopyNumber_Arm Correlate_Clinical_vs_CopyNumber_Arm Append_CustomClinical->Correlate_Clinical_vs_CopyNumber_Arm Correlate_Clinical_vs_Mutation Correlate_Clinical_vs_Mutation Append_CustomClinical->Correlate_Clinical_vs_Mutation Correlate_Clinical_vs_RPPA Correlate_Clinical_vs_RPPA Append_CustomClinical->Correlate_Clinical_vs_RPPA Mutation_CHASM Mutation_CHASM Correlate_molecularSubtype_vs_CopyNumber_Focal Correlate_molecularSubtype_vs_CopyNumber_Focal Mutation_CoOccurrence Mutation_CoOccurrence Aggregate_AnalysisFeatures->Mutation_CoOccurrence miR_FindDirectTargets miR_FindDirectTargets Mutation_APOBEC Mutation_APOBEC Correlate_Clinical_vs_Mutation_APOBEC_Continuous Correlate_Clinical_vs_Mutation_APOBEC_Continuous Mutation_APOBEC->Correlate_Clinical_vs_Mutation_APOBEC_Continuous Correlate_Clinical_vs_Mutation_APOBEC_Categorical Correlate_Clinical_vs_Mutation_APOBEC_Categorical Mutation_APOBEC->Correlate_Clinical_vs_Mutation_APOBEC_Categorical Correlate_mRNAseq_vs_Mutation_APOBEC Correlate_mRNAseq_vs_Mutation_APOBEC Mutation_APOBEC->Correlate_mRNAseq_vs_Mutation_APOBEC mRNA_Clustering_CNMF mRNA_Clustering_CNMF mRNA_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters miRseq_FindDirectTargets miRseq_FindDirectTargets miR_Clustering_CNMF miR_Clustering_CNMF miR_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters CopyNumber_Clustering_CNMF CopyNumber_Clustering_CNMF CopyNumber_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters Correlate_Methylation_vs_mRNA Correlate_Methylation_vs_mRNA Pathway_Hotnet Pathway_Hotnet CopyNumberLowPass_Gistic2 CopyNumberLowPass_Gistic2 Correlate_CopyNumber_vs_mRNA Correlate_CopyNumber_vs_mRNA Pathway_FindEnrichedGenes Pathway_FindEnrichedGenes Correlate_CopyNumber_vs_mRNA->Pathway_FindEnrichedGenes Aggregate_Gene_Status Aggregate_Gene_Status Correlate_CopyNumber_vs_mRNA->Aggregate_Gene_Status CopyNumber_Gistic2_Postprocess_Focal CopyNumber_Gistic2_Postprocess_Focal CopyNumber_Gistic2_Postprocess_Focal->CopyNumber_Clustering_CNMF CopyNumber_Clustering_CNMF_thresholded CopyNumber_Clustering_CNMF_thresholded CopyNumber_Gistic2_Postprocess_Focal->CopyNumber_Clustering_CNMF_thresholded Aggregate_Molecular_Subtype_Clusters->Pathway_GSEA_mRNAseq Aggregate_Molecular_Subtype_Clusters->Correlate_molecularSubtype_vs_CopyNumber_Focal Aggregate_Molecular_Subtype_Clusters->Aggregate_AnalysisFeatures Aggregate_Molecular_Subtype_Clusters->Correlate_Clinical_vs_Molecular_Subtypes Correlate_molecularSubtype_vs_CopyNumber_Arm Correlate_molecularSubtype_vs_CopyNumber_Arm Aggregate_Molecular_Subtype_Clusters->Correlate_molecularSubtype_vs_CopyNumber_Arm Correlate_molecularSubtype_vs_Mutation Correlate_molecularSubtype_vs_Mutation Aggregate_Molecular_Subtype_Clusters->Correlate_molecularSubtype_vs_Mutation miRseq_Mature_Clustering_Consensus_Plus miRseq_Mature_Clustering_Consensus_Plus miRseq_Mature_Clustering_Consensus_Plus->Aggregate_Molecular_Subtype_Clusters mRNAseq_Clustering_Consensus_Plus mRNAseq_Clustering_Consensus_Plus mRNAseq_Clustering_Consensus_Plus->Aggregate_AnalysisFeatures mRNAseq_Clustering_Consensus_Plus->Aggregate_Molecular_Subtype_Clusters mRNAseq_Clustering_Consensus_Plus->Pathway_FindEnrichedGenes miR_Clustering_Consensus_Plus miR_Clustering_Consensus_Plus miR_Clustering_Consensus_Plus->Aggregate_Molecular_Subtype_Clusters CopyNumber_Gistic2 CopyNumber_Gistic2 CopyNumber_Gistic2->Correlate_molecularSubtype_vs_CopyNumber_Focal CopyNumber_Gistic2->Aggregate_AnalysisFeatures CopyNumber_Gistic2->Pathway_Hotnet CopyNumber_Gistic2->Correlate_CopyNumber_vs_mRNA CopyNumber_Gistic2->CopyNumber_Gistic2_Postprocess_Focal CopyNumber_Gistic2->Correlate_molecularSubtype_vs_CopyNumber_Arm Correlate_CopyNumber_vs_miR Correlate_CopyNumber_vs_miR CopyNumber_Gistic2->Correlate_CopyNumber_vs_miR CopyNumber_Gistic2->Correlate_Clinical_vs_CopyNumber_Focal Correlate_CopyNumber_vs_mRNAseq Correlate_CopyNumber_vs_mRNAseq CopyNumber_Gistic2->Correlate_CopyNumber_vs_mRNAseq CopyNumber_Gistic2->Pathway_FindEnrichedGenes CopyNumber_Gistic2->Correlate_Clinical_vs_CopyNumber_Arm CopyNumber_Gistic2->Aggregate_Gene_Status Pathway_Paradigm Pathway_Paradigm CopyNumber_Gistic2->Pathway_Paradigm RPPA_Clustering_Consensus_Plus RPPA_Clustering_Consensus_Plus RPPA_Clustering_Consensus_Plus->Aggregate_Molecular_Subtype_Clusters miRseq_Clustering_CNMF miRseq_Clustering_CNMF miRseq_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters Correlate_CopyNumber_vs_mRNAseq->Aggregate_Gene_Status mRNAseq_Clustering_CNMF mRNAseq_Clustering_CNMF mRNAseq_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters Mutation_Assessor Mutation_Assessor RPPA_Clustering_CNMF RPPA_Clustering_CNMF RPPA_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters miRseq_Mature_Clustering_CNMF miRseq_Mature_Clustering_CNMF miRseq_Mature_Clustering_CNMF->Aggregate_Molecular_Subtype_Clusters Mutation_Significance Mutation_Significance Mutation_Significance->Mutation_CHASM Mutation_Significance->Aggregate_AnalysisFeatures Mutation_Significance->Mutation_APOBEC Mutation_Significance->Correlate_Clinical_vs_MutationRate Mutation_Significance->Pathway_Hotnet Mutation_Significance->Correlate_molecularSubtype_vs_Mutation Mutation_Significance->Pathway_FindEnrichedGenes Mutation_Significance->Mutation_Assessor Mutation_Significance->Correlate_Clinical_vs_Mutation Mutation_Significance->Aggregate_Gene_Status


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This page generated on: Tue Nov 22 09:21:16 EST 2016