Correlation between gene mutation status and molecular subtypes
Pancreatic Adenocarcinoma (Primary solid tumor)
16 April 2014  |  analyses__2014_04_16
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1FJ2FG1
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 470 genes and 8 molecular subtypes across 91 patients, one significant finding detected with P value < 0.05 and Q value < 0.25.

  • KRAS mutation correlated to 'METHLYATION_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 470 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, one significant finding detected.

Clinical
Features
CN
CNMF
METHLYATION
CNMF
MRNASEQ
CNMF
MRNASEQ
CHIERARCHICAL
MIRSEQ
CNMF
MIRSEQ
CHIERARCHICAL
MIRSEQ
MATURE
CNMF
MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
KRAS 65 (71%) 26 0.00635
(1.00)
1.62e-05
(0.0609)
0.251
(1.00)
0.0156
(1.00)
0.0668
(1.00)
0.345
(1.00)
0.285
(1.00)
0.0534
(1.00)
ATRX 7 (8%) 84 0.169
(1.00)
0.0195
(1.00)
0.147
(1.00)
0.172
(1.00)
0.445
(1.00)
0.215
(1.00)
0.467
(1.00)
0.194
(1.00)
GRIN1 7 (8%) 84 0.3
(1.00)
0.191
(1.00)
0.0274
(1.00)
0.0646
(1.00)
0.95
(1.00)
0.768
(1.00)
0.602
(1.00)
1
(1.00)
DHX9 9 (10%) 82 0.491
(1.00)
0.237
(1.00)
0.733
(1.00)
0.0703
(1.00)
0.12
(1.00)
0.728
(1.00)
0.604
(1.00)
0.742
(1.00)
HIBCH 8 (9%) 83 0.716
(1.00)
0.456
(1.00)
1
(1.00)
1
(1.00)
0.159
(1.00)
0.705
(1.00)
1
(1.00)
1
(1.00)
AFTPH 14 (15%) 77 0.28
(1.00)
0.744
(1.00)
0.594
(1.00)
0.134
(1.00)
0.0417
(1.00)
0.395
(1.00)
0.804
(1.00)
1
(1.00)
APP 10 (11%) 81 0.0372
(1.00)
0.764
(1.00)
0.733
(1.00)
0.0359
(1.00)
0.238
(1.00)
0.728
(1.00)
0.316
(1.00)
0.318
(1.00)
TMC4 19 (21%) 72 1
(1.00)
0.417
(1.00)
0.44
(1.00)
0.162
(1.00)
0.897
(1.00)
0.112
(1.00)
0.904
(1.00)
0.297
(1.00)
KIAA0020 5 (5%) 86 0.352
(1.00)
0.849
(1.00)
0.704
(1.00)
0.395
(1.00)
0.633
(1.00)
1
(1.00)
0.71
(1.00)
1
(1.00)
BRDT 17 (19%) 74 0.00345
(1.00)
0.0134
(1.00)
0.0967
(1.00)
0.00876
(1.00)
0.0742
(1.00)
0.131
(1.00)
0.26
(1.00)
0.257
(1.00)
SETD1A 17 (19%) 74 0.881
(1.00)
0.801
(1.00)
0.683
(1.00)
0.312
(1.00)
0.822
(1.00)
0.483
(1.00)
0.826
(1.00)
0.751
(1.00)
SEH1L 17 (19%) 74 0.124
(1.00)
0.0656
(1.00)
0.0493
(1.00)
0.00876
(1.00)
0.00474
(1.00)
0.0811
(1.00)
0.0251
(1.00)
0.0949
(1.00)
IRS1 15 (16%) 76 0.694
(1.00)
0.877
(1.00)
1
(1.00)
1
(1.00)
0.686
(1.00)
0.914
(1.00)
0.874
(1.00)
1
(1.00)
PLAUR 6 (7%) 85 0.306
(1.00)
0.877
(1.00)
0.848
(1.00)
1
(1.00)
1
(1.00)
0.501
(1.00)
1
(1.00)
1
(1.00)
TERF1 6 (7%) 85 0.00978
(1.00)
0.0325
(1.00)
1
(1.00)
0.446
(1.00)
0.616
(1.00)
0.482
(1.00)
0.656
(1.00)
0.473
(1.00)
PDILT 11 (12%) 80 0.405
(1.00)
1
(1.00)
0.703
(1.00)
0.0783
(1.00)
0.834
(1.00)
0.582
(1.00)
0.92
(1.00)
0.919
(1.00)
CUX2 11 (12%) 80 0.28
(1.00)
0.721
(1.00)
0.703
(1.00)
0.137
(1.00)
0.884
(1.00)
0.839
(1.00)
1
(1.00)
0.842
(1.00)
KRT73 10 (11%) 81 0.9
(1.00)
0.694
(1.00)
0.761
(1.00)
0.15
(1.00)
0.538
(1.00)
0.745
(1.00)
1
(1.00)
1
(1.00)
TAOK2 20 (22%) 71 0.636
(1.00)
0.435
(1.00)
0.154
(1.00)
0.121
(1.00)
0.342
(1.00)
0.736
(1.00)
0.309
(1.00)
0.869
(1.00)
SORBS2 17 (19%) 74 0.189
(1.00)
0.844
(1.00)
0.248
(1.00)
0.206
(1.00)
0.753
(1.00)
0.76
(1.00)
0.79
(1.00)
0.248
(1.00)
ATG16L2 5 (5%) 86 0.423
(1.00)
0.254
(1.00)
0.134
(1.00)
0.118
(1.00)
0.335
(1.00)
0.0989
(1.00)
0.433
(1.00)
0.141
(1.00)
PTCD1 8 (9%) 83 0.591
(1.00)
0.729
(1.00)
0.626
(1.00)
0.515
(1.00)
0.779
(1.00)
0.489
(1.00)
0.637
(1.00)
0.243
(1.00)
FAM198B 6 (7%) 85 0.54
(1.00)
0.023
(1.00)
0.219
(1.00)
0.048
(1.00)
0.836
(1.00)
0.563
(1.00)
1
(1.00)
0.566
(1.00)
NDEL1 5 (5%) 86 0.504
(1.00)
0.733
(1.00)
0.000377
(1.00)
0.118
(1.00)
0.0749
(1.00)
0.0989
(1.00)
0.0224
(1.00)
0.141
(1.00)
NFIL3 11 (12%) 80 0.116
(1.00)
0.468
(1.00)
0.84
(1.00)
0.0783
(1.00)
0.414
(1.00)
0.645
(1.00)
0.647
(1.00)
1
(1.00)
ATP13A3 11 (12%) 80 0.448
(1.00)
0.721
(1.00)
0.703
(1.00)
0.587
(1.00)
1
(1.00)
0.0814
(1.00)
0.843
(1.00)
0.0663
(1.00)
IPP 17 (19%) 74 0.391
(1.00)
0.233
(1.00)
0.119
(1.00)
0.0311
(1.00)
0.326
(1.00)
0.048
(1.00)
0.222
(1.00)
0.0427
(1.00)
GAS2L2 23 (25%) 68 0.448
(1.00)
0.772
(1.00)
0.671
(1.00)
0.0795
(1.00)
0.807
(1.00)
0.237
(1.00)
0.673
(1.00)
0.658
(1.00)
XRCC2 5 (5%) 86 0.837
(1.00)
0.52
(1.00)
1
(1.00)
0.667
(1.00)
0.858
(1.00)
0.715
(1.00)
0.247
(1.00)
0.603
(1.00)
ZBTB33 6 (7%) 85 0.54
(1.00)
0.76
(1.00)
0.299
(1.00)
0.446
(1.00)
0.346
(1.00)
0.189
(1.00)
0.106
(1.00)
0.256
(1.00)
PTPRF 17 (19%) 74 0.0621
(1.00)
0.15
(1.00)
0.165
(1.00)
0.0311
(1.00)
0.204
(1.00)
0.0357
(1.00)
0.456
(1.00)
0.00811
(1.00)
UBXN6 9 (10%) 82 0.659
(1.00)
0.292
(1.00)
0.733
(1.00)
0.0359
(1.00)
0.26
(1.00)
0.582
(1.00)
0.316
(1.00)
0.388
(1.00)
MEPCE 18 (20%) 73 0.0959
(1.00)
0.111
(1.00)
0.506
(1.00)
0.0523
(1.00)
0.276
(1.00)
0.761
(1.00)
0.47
(1.00)
0.416
(1.00)
CRAT 6 (7%) 85 0.306
(1.00)
0.0999
(1.00)
0.15
(1.00)
0.0697
(1.00)
0.0803
(1.00)
0.127
(1.00)
0.132
(1.00)
0.862
(1.00)
MBD3 13 (14%) 78 0.794
(1.00)
1
(1.00)
0.241
(1.00)
0.0759
(1.00)
0.689
(1.00)
0.48
(1.00)
0.54
(1.00)
1
(1.00)
ZNF644 9 (10%) 82 0.194
(1.00)
1
(1.00)
1
(1.00)
0.0359
(1.00)
0.0656
(1.00)
0.582
(1.00)
0.0888
(1.00)
0.388
(1.00)
NAGPA 8 (9%) 83 0.636
(1.00)
0.656
(1.00)
0.208
(1.00)
0.00419
(1.00)
0.811
(1.00)
0.394
(1.00)
0.112
(1.00)
0.309
(1.00)
WWTR1 12 (13%) 79 0.335
(1.00)
0.925
(1.00)
0.61
(1.00)
0.147
(1.00)
0.373
(1.00)
0.921
(1.00)
0.924
(1.00)
0.924
(1.00)
B4GALT2 10 (11%) 81 0.337
(1.00)
0.247
(1.00)
0.18
(1.00)
0.39
(1.00)
0.157
(1.00)
0.68
(1.00)
0.231
(1.00)
0.309
(1.00)
SGOL2 11 (12%) 80 0.28
(1.00)
0.721
(1.00)
0.497
(1.00)
0.137
(1.00)
0.375
(1.00)
0.169
(1.00)
0.22
(1.00)
0.125
(1.00)
EDC4 18 (20%) 73 0.887
(1.00)
0.793
(1.00)
0.9
(1.00)
0.281
(1.00)
0.683
(1.00)
0.912
(1.00)
0.877
(1.00)
0.594
(1.00)
RAB11FIP5 8 (9%) 83 1
(1.00)
0.409
(1.00)
0.182
(1.00)
0.515
(1.00)
0.637
(1.00)
0.705
(1.00)
0.895
(1.00)
1
(1.00)
DHRS7B 5 (5%) 86 1
(1.00)
1
(1.00)
0.596
(1.00)
0.667
(1.00)
0.927
(1.00)
0.715
(1.00)
0.852
(1.00)
0.603
(1.00)
PAK1 7 (8%) 84 1
(1.00)
0.888
(1.00)
1
(1.00)
1
(1.00)
0.9
(1.00)
0.593
(1.00)
0.885
(1.00)
1
(1.00)
FYN 8 (9%) 83 0.43
(1.00)
0.409
(1.00)
0.16
(1.00)
0.224
(1.00)
0.327
(1.00)
0.308
(1.00)
0.4
(1.00)
0.399
(1.00)
TMCO1 12 (13%) 79 0.72
(1.00)
0.925
(1.00)
0.779
(1.00)
0.185
(1.00)
0.0743
(1.00)
1
(1.00)
0.52
(1.00)
0.924
(1.00)
NPNT 10 (11%) 81 0.56
(1.00)
0.764
(1.00)
0.0395
(1.00)
1
(1.00)
0.345
(1.00)
0.128
(1.00)
0.626
(1.00)
0.211
(1.00)
ERF 16 (18%) 75 0.767
(1.00)
0.591
(1.00)
0.867
(1.00)
0.0526
(1.00)
0.527
(1.00)
0.86
(1.00)
0.3
(1.00)
0.536
(1.00)
SLC24A1 9 (10%) 82 0.3
(1.00)
0.263
(1.00)
0.66
(1.00)
0.00626
(1.00)
0.0245
(1.00)
0.341
(1.00)
0.0984
(1.00)
0.254
(1.00)
TULP1 9 (10%) 82 0.122
(1.00)
0.614
(1.00)
0.0635
(1.00)
0.172
(1.00)
0.319
(1.00)
0.148
(1.00)
0.204
(1.00)
0.285
(1.00)
BMP2K 14 (15%) 77 0.284
(1.00)
0.693
(1.00)
0.259
(1.00)
0.0581
(1.00)
0.366
(1.00)
0.159
(1.00)
0.932
(1.00)
0.655
(1.00)
FADS2 13 (14%) 78 0.308
(1.00)
0.866
(1.00)
0.00072
(1.00)
0.0869
(1.00)
0.101
(1.00)
0.131
(1.00)
0.0274
(1.00)
0.241
(1.00)
SMG7 8 (9%) 83 0.889
(1.00)
1
(1.00)
0.712
(1.00)
0.11
(1.00)
0.95
(1.00)
1
(1.00)
0.507
(1.00)
0.802
(1.00)
SLC39A5 11 (12%) 80 0.253
(1.00)
0.214
(1.00)
0.332
(1.00)
0.21
(1.00)
0.00397
(1.00)
0.401
(1.00)
0.313
(1.00)
0.101
(1.00)
MYH10 21 (23%) 70 0.0494
(1.00)
0.0522
(1.00)
0.107
(1.00)
0.00857
(1.00)
0.624
(1.00)
0.0238
(1.00)
0.119
(1.00)
0.191
(1.00)
WASF3 17 (19%) 74 0.229
(1.00)
1
(1.00)
0.285
(1.00)
0.474
(1.00)
0.506
(1.00)
0.697
(1.00)
1
(1.00)
0.679
(1.00)
GPR25 12 (13%) 79 0.471
(1.00)
0.331
(1.00)
0.662
(1.00)
0.068
(1.00)
0.0335
(1.00)
0.592
(1.00)
0.782
(1.00)
0.373
(1.00)
NFAT5 20 (22%) 71 0.547
(1.00)
0.769
(1.00)
0.154
(1.00)
0.223
(1.00)
1
(1.00)
0.809
(1.00)
0.819
(1.00)
0.869
(1.00)
FGF10 14 (15%) 77 0.856
(1.00)
0.154
(1.00)
0.259
(1.00)
0.395
(1.00)
0.332
(1.00)
0.63
(1.00)
0.193
(1.00)
0.362
(1.00)
C19ORF55 18 (20%) 73 0.162
(1.00)
0.0804
(1.00)
0.611
(1.00)
0.0935
(1.00)
0.756
(1.00)
0.697
(1.00)
0.726
(1.00)
0.679
(1.00)
SLC4A3 12 (13%) 79 0.85
(1.00)
0.228
(1.00)
0.61
(1.00)
0.147
(1.00)
0.695
(1.00)
1
(1.00)
0.924
(1.00)
0.924
(1.00)
CEL 9 (10%) 82 0.194
(1.00)
1
(1.00)
0.00302
(1.00)
0.36
(1.00)
0.642
(1.00)
0.424
(1.00)
0.284
(1.00)
0.673
(1.00)
APOBEC4 9 (10%) 82 0.425
(1.00)
0.908
(1.00)
0.541
(1.00)
0.529
(1.00)
1
(1.00)
0.471
(1.00)
0.901
(1.00)
0.473
(1.00)
MED15 24 (26%) 67 0.619
(1.00)
0.195
(1.00)
0.124
(1.00)
0.112
(1.00)
0.408
(1.00)
0.949
(1.00)
0.6
(1.00)
0.802
(1.00)
MAML3 13 (14%) 78 0.678
(1.00)
0.698
(1.00)
0.494
(1.00)
0.0759
(1.00)
0.533
(1.00)
0.875
(1.00)
0.54
(1.00)
0.862
(1.00)
SULT1C3 6 (7%) 85 0.747
(1.00)
0.435
(1.00)
0.755
(1.00)
1
(1.00)
0.189
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
CCR3 9 (10%) 82 1
(1.00)
0.505
(1.00)
0.733
(1.00)
0.751
(1.00)
0.377
(1.00)
0.813
(1.00)
1
(1.00)
1
(1.00)
CLCC1 5 (5%) 86 0.0726
(1.00)
0.0122
(1.00)
0.426
(1.00)
0.118
(1.00)
0.0924
(1.00)
0.501
(1.00)
0.0504
(1.00)
0.0492
(1.00)
PABPC1 15 (16%) 76 0.813
(1.00)
0.35
(1.00)
0.247
(1.00)
1
(1.00)
0.117
(1.00)
0.457
(1.00)
0.266
(1.00)
0.315
(1.00)
CCDC103 6 (7%) 85 0.259
(1.00)
0.877
(1.00)
0.345
(1.00)
0.69
(1.00)
0.651
(1.00)
1
(1.00)
0.561
(1.00)
1
(1.00)
CHGA 12 (13%) 79 0.0648
(1.00)
1
(1.00)
0.924
(1.00)
0.185
(1.00)
0.0435
(1.00)
0.592
(1.00)
0.319
(1.00)
0.373
(1.00)
KDM2A 11 (12%) 80 0.206
(1.00)
0.0623
(1.00)
0.254
(1.00)
0.137
(1.00)
0.487
(1.00)
0.708
(1.00)
0.28
(1.00)
0.418
(1.00)
OLIG3 12 (13%) 79 0.335
(1.00)
0.925
(1.00)
0.124
(1.00)
0.013
(1.00)
0.124
(1.00)
0.0857
(1.00)
0.671
(1.00)
0.34
(1.00)
FOXP2 20 (22%) 71 0.415
(1.00)
0.576
(1.00)
0.156
(1.00)
0.17
(1.00)
0.545
(1.00)
0.684
(1.00)
0.475
(1.00)
0.572
(1.00)
MAGEA10 13 (14%) 78 0.678
(1.00)
0.866
(1.00)
0.925
(1.00)
0.611
(1.00)
0.689
(1.00)
0.875
(1.00)
0.805
(1.00)
0.684
(1.00)
EGR1 16 (18%) 75 0.821
(1.00)
0.905
(1.00)
0.867
(1.00)
0.26
(1.00)
0.57
(1.00)
0.557
(1.00)
0.657
(1.00)
0.938
(1.00)
PRDM8 23 (25%) 68 0.565
(1.00)
0.274
(1.00)
0.821
(1.00)
0.164
(1.00)
0.00997
(1.00)
0.431
(1.00)
0.285
(1.00)
0.153
(1.00)
PIAS4 3 (3%) 88 0.605
(1.00)
0.266
(1.00)
0.795
(1.00)
0.0357
(1.00)
0.164
(1.00)
0.217
(1.00)
1
(1.00)
0.228
(1.00)
TEX2 12 (13%) 79 0.399
(1.00)
0.683
(1.00)
0.52
(1.00)
0.068
(1.00)
0.971
(1.00)
0.246
(1.00)
0.616
(1.00)
0.563
(1.00)
ARHGAP18 10 (11%) 81 0.194
(1.00)
0.764
(1.00)
0.0981
(1.00)
0.264
(1.00)
0.444
(1.00)
0.364
(1.00)
0.467
(1.00)
0.421
(1.00)
TMEM175 14 (15%) 77 0.48
(1.00)
0.314
(1.00)
0.136
(1.00)
0.227
(1.00)
0.131
(1.00)
0.0306
(1.00)
0.295
(1.00)
0.021
(1.00)
CDKN2A 21 (23%) 70 0.0117
(1.00)
0.00458
(1.00)
0.0693
(1.00)
0.124
(1.00)
0.0884
(1.00)
0.173
(1.00)
0.00829
(1.00)
0.0845
(1.00)
CBR3 5 (5%) 86 0.135
(1.00)
0.0197
(1.00)
0.245
(1.00)
0.202
(1.00)
0.551
(1.00)
0.267
(1.00)
0.597
(1.00)
0.187
(1.00)
TOX4 9 (10%) 82 0.0815
(1.00)
0.101
(1.00)
0.733
(1.00)
0.0703
(1.00)
0.268
(1.00)
0.525
(1.00)
0.604
(1.00)
0.538
(1.00)
OR10A2 15 (16%) 76 0.87
(1.00)
0.124
(1.00)
0.872
(1.00)
0.308
(1.00)
0.673
(1.00)
1
(1.00)
0.936
(1.00)
1
(1.00)
OR10A7 30 (33%) 61 0.379
(1.00)
0.166
(1.00)
0.596
(1.00)
0.796
(1.00)
0.334
(1.00)
0.571
(1.00)
0.918
(1.00)
0.451
(1.00)
FAM63B 10 (11%) 81 1
(1.00)
0.586
(1.00)
1
(1.00)
0.15
(1.00)
0.633
(1.00)
0.745
(1.00)
0.91
(1.00)
0.421
(1.00)
RNF168 8 (9%) 83 0.797
(1.00)
0.586
(1.00)
0.892
(1.00)
0.0429
(1.00)
0.154
(1.00)
0.795
(1.00)
0.451
(1.00)
0.565
(1.00)
POP5 12 (13%) 79 0.85
(1.00)
0.738
(1.00)
0.851
(1.00)
0.443
(1.00)
0.766
(1.00)
0.269
(1.00)
0.319
(1.00)
0.782
(1.00)
NF2 5 (5%) 86 0.103
(1.00)
0.304
(1.00)
0.596
(1.00)
0.065
(1.00)
0.102
(1.00)
0.598
(1.00)
0.147
(1.00)
0.365
(1.00)
RIOK1 14 (15%) 77 0.556
(1.00)
0.154
(1.00)
0.0336
(1.00)
0.0581
(1.00)
0.242
(1.00)
0.25
(1.00)
0.11
(1.00)
0.476
(1.00)
OR6C65 6 (7%) 85 0.747
(1.00)
0.877
(1.00)
0.651
(1.00)
0.248
(1.00)
0.0332
(1.00)
0.284
(1.00)
0.865
(1.00)
0.348
(1.00)
ZBTB24 5 (5%) 86 0.448
(1.00)
0.365
(1.00)
0.0402
(1.00)
0.395
(1.00)
0.633
(1.00)
0.501
(1.00)
0.509
(1.00)
1
(1.00)
SYT15 13 (14%) 78 0.221
(1.00)
0.585
(1.00)
0.925
(1.00)
0.171
(1.00)
0.703
(1.00)
1
(1.00)
0.69
(1.00)
0.862
(1.00)
SLC22A9 12 (13%) 79 0.471
(1.00)
0.331
(1.00)
0.401
(1.00)
1
(1.00)
0.894
(1.00)
0.46
(1.00)
0.671
(1.00)
0.721
(1.00)
SRP14 18 (20%) 73 0.941
(1.00)
1
(1.00)
0.232
(1.00)
0.497
(1.00)
0.44
(1.00)
0.397
(1.00)
0.258
(1.00)
0.163
(1.00)
DIAPH3 14 (15%) 77 0.643
(1.00)
0.474
(1.00)
0.283
(1.00)
0.0581
(1.00)
0.0286
(1.00)
0.579
(1.00)
0.932
(1.00)
0.932
(1.00)
WRN 13 (14%) 78 0.0656
(1.00)
0.124
(1.00)
0.427
(1.00)
0.34
(1.00)
0.949
(1.00)
0.875
(1.00)
0.805
(1.00)
0.925
(1.00)
PDZD2 18 (20%) 73 0.163
(1.00)
1
(1.00)
0.151
(1.00)
0.0171
(1.00)
0.276
(1.00)
0.0871
(1.00)
0.0354
(1.00)
0.155
(1.00)
AARS2 11 (12%) 80 0.116
(1.00)
0.555
(1.00)
0.305
(1.00)
0.0357
(1.00)
0.498
(1.00)
0.401
(1.00)
0.347
(1.00)
0.277
(1.00)
SHPRH 12 (13%) 79 0.85
(1.00)
0.795
(1.00)
0.236
(1.00)
0.068
(1.00)
0.2
(1.00)
0.0965
(1.00)
0.0942
(1.00)
0.13
(1.00)
ZNF337 12 (13%) 79 0.434
(1.00)
0.577
(1.00)
0.779
(1.00)
0.185
(1.00)
0.766
(1.00)
0.776
(1.00)
1
(1.00)
0.481
(1.00)
NGEF 6 (7%) 85 0.0836
(1.00)
0.76
(1.00)
0.861
(1.00)
1
(1.00)
0.616
(1.00)
0.563
(1.00)
0.656
(1.00)
0.566
(1.00)
BCL2L1 7 (8%) 84 1
(1.00)
1
(1.00)
0.885
(1.00)
1
(1.00)
0.279
(1.00)
0.877
(1.00)
0.779
(1.00)
0.888
(1.00)
RBM15B 10 (11%) 81 0.827
(1.00)
0.639
(1.00)
0.0519
(1.00)
0.768
(1.00)
0.497
(1.00)
0.452
(1.00)
0.314
(1.00)
0.252
(1.00)
THBS4 21 (23%) 70 0.203
(1.00)
0.352
(1.00)
0.517
(1.00)
0.0295
(1.00)
0.454
(1.00)
0.471
(1.00)
0.407
(1.00)
0.141
(1.00)
PVRL1 12 (13%) 79 0.0707
(1.00)
0.122
(1.00)
0.278
(1.00)
0.0029
(1.00)
0.052
(1.00)
0.337
(1.00)
0.203
(1.00)
0.219
(1.00)
PVRL2 11 (12%) 80 1
(1.00)
0.849
(1.00)
0.703
(1.00)
0.0783
(1.00)
0.858
(1.00)
0.645
(1.00)
0.77
(1.00)
0.768
(1.00)
TNNI3K 13 (14%) 78 0.856
(1.00)
0.334
(1.00)
0.494
(1.00)
0.171
(1.00)
0.903
(1.00)
0.875
(1.00)
0.805
(1.00)
1
(1.00)
NEDD4L 11 (12%) 80 0.405
(1.00)
0.507
(1.00)
0.542
(1.00)
0.0783
(1.00)
0.0472
(1.00)
0.0815
(1.00)
0.313
(1.00)
0.0363
(1.00)
IRX4 14 (15%) 77 0.0895
(1.00)
0.57
(1.00)
0.647
(1.00)
0.395
(1.00)
0.317
(1.00)
0.735
(1.00)
0.608
(1.00)
0.932
(1.00)
GTF3C3 6 (7%) 85 0.868
(1.00)
0.163
(1.00)
0.258
(1.00)
1
(1.00)
0.498
(1.00)
0.74
(1.00)
0.307
(1.00)
0.862
(1.00)
NAP1L3 6 (7%) 85 0.473
(1.00)
0.322
(1.00)
0.755
(1.00)
0.69
(1.00)
0.472
(1.00)
0.858
(1.00)
0.758
(1.00)
1
(1.00)
TMEM40 16 (18%) 75 0.374
(1.00)
0.327
(1.00)
0.329
(1.00)
0.614
(1.00)
0.148
(1.00)
0.684
(1.00)
0.428
(1.00)
0.76
(1.00)
MED9 17 (19%) 74 0.59
(1.00)
0.546
(1.00)
0.683
(1.00)
0.168
(1.00)
0.0919
(1.00)
0.877
(1.00)
0.456
(1.00)
0.915
(1.00)
ZNF608 14 (15%) 77 0.0699
(1.00)
0.521
(1.00)
0.445
(1.00)
0.0581
(1.00)
0.62
(1.00)
0.371
(1.00)
0.413
(1.00)
0.301
(1.00)
DPAGT1 5 (5%) 86 0.837
(1.00)
0.849
(1.00)
0.359
(1.00)
1
(1.00)
0.633
(1.00)
0.598
(1.00)
0.111
(1.00)
0.365
(1.00)
IFNGR2 13 (14%) 78 0.261
(1.00)
0.746
(1.00)
0.925
(1.00)
0.796
(1.00)
0.563
(1.00)
0.723
(1.00)
0.865
(1.00)
0.801
(1.00)
PPARGC1B 15 (16%) 76 0.139
(1.00)
0.43
(1.00)
0.528
(1.00)
0.0307
(1.00)
0.515
(1.00)
0.539
(1.00)
0.328
(1.00)
0.617
(1.00)
DHX57 20 (22%) 71 0.416
(1.00)
0.0222
(1.00)
0.813
(1.00)
0.121
(1.00)
0.294
(1.00)
0.688
(1.00)
0.148
(1.00)
0.389
(1.00)
TDRD6 12 (13%) 79 1
(1.00)
1
(1.00)
0.278
(1.00)
0.068
(1.00)
0.649
(1.00)
0.246
(1.00)
0.374
(1.00)
0.563
(1.00)
CIR1 16 (18%) 75 0.717
(1.00)
0.905
(1.00)
0.628
(1.00)
0.115
(1.00)
0.94
(1.00)
0.88
(1.00)
0.61
(1.00)
0.938
(1.00)
ZMYM5 10 (11%) 81 0.0777
(1.00)
0.639
(1.00)
0.458
(1.00)
0.15
(1.00)
0.65
(1.00)
0.68
(1.00)
0.314
(1.00)
0.571
(1.00)
TMEM184A 18 (20%) 73 0.787
(1.00)
0.488
(1.00)
0.658
(1.00)
0.298
(1.00)
0.981
(1.00)
0.567
(1.00)
0.904
(1.00)
0.722
(1.00)
BHLHB9 10 (11%) 81 0.000893
(1.00)
0.00301
(1.00)
0.0342
(1.00)
0.191
(1.00)
0.183
(1.00)
0.00525
(1.00)
0.115
(1.00)
0.00659
(1.00)
MAP3K7 9 (10%) 82 0.592
(1.00)
0.743
(1.00)
1
(1.00)
0.0703
(1.00)
0.47
(1.00)
0.341
(1.00)
0.228
(1.00)
0.254
(1.00)
EME2 10 (11%) 81 0.3
(1.00)
0.149
(1.00)
0.502
(1.00)
0.0186
(1.00)
0.116
(1.00)
0.227
(1.00)
0.19
(1.00)
0.515
(1.00)
TP53 59 (65%) 32 0.0122
(1.00)
0.00487
(1.00)
1
(1.00)
0.0891
(1.00)
0.21
(1.00)
0.83
(1.00)
0.371
(1.00)
0.237
(1.00)
ALS2CR11 15 (16%) 76 0.134
(1.00)
0.43
(1.00)
0.387
(1.00)
0.0307
(1.00)
0.211
(1.00)
0.261
(1.00)
0.285
(1.00)
0.283
(1.00)
SALL1 13 (14%) 78 0.0713
(1.00)
0.233
(1.00)
1
(1.00)
0.147
(1.00)
0.649
(1.00)
0.592
(1.00)
0.616
(1.00)
0.665
(1.00)
ZMIZ1 17 (19%) 74 0.778
(1.00)
0.939
(1.00)
0.447
(1.00)
0.281
(1.00)
0.284
(1.00)
0.697
(1.00)
0.549
(1.00)
0.751
(1.00)
ESCO2 8 (9%) 83 0.302
(1.00)
0.141
(1.00)
0.495
(1.00)
0.515
(1.00)
0.718
(1.00)
0.232
(1.00)
1
(1.00)
0.565
(1.00)
CTRL 7 (8%) 84 0.26
(1.00)
1
(1.00)
0.678
(1.00)
0.0646
(1.00)
0.39
(1.00)
0.768
(1.00)
0.885
(1.00)
1
(1.00)
OTUD4 24 (26%) 67 0.943
(1.00)
0.414
(1.00)
0.0595
(1.00)
0.22
(1.00)
0.932
(1.00)
0.514
(1.00)
0.6
(1.00)
0.35
(1.00)
QRICH1 15 (16%) 76 0.259
(1.00)
0.338
(1.00)
0.147
(1.00)
0.0823
(1.00)
0.124
(1.00)
0.0213
(1.00)
0.0118
(1.00)
0.0729
(1.00)
RAD17 4 (4%) 87 1
(1.00)
0.369
(1.00)
0.441
(1.00)
1
(1.00)
0.238
(1.00)
0.243
(1.00)
0.683
(1.00)
0.262
(1.00)
COTL1 8 (9%) 83 0.0999
(1.00)
0.0726
(1.00)
0.0915
(1.00)
0.027
(1.00)
0.0909
(1.00)
0.0152
(1.00)
0.451
(1.00)
0.0245
(1.00)
CDH3 9 (10%) 82 0.534
(1.00)
0.101
(1.00)
0.235
(1.00)
0.11
(1.00)
0.378
(1.00)
0.232
(1.00)
0.0367
(1.00)
0.124
(1.00)
ECSIT 6 (7%) 85 1
(1.00)
1
(1.00)
0.00236
(1.00)
0.248
(1.00)
0.385
(1.00)
0.156
(1.00)
0.16
(1.00)
0.301
(1.00)
PHF14 7 (8%) 84 0.345
(1.00)
0.694
(1.00)
0.523
(1.00)
0.0249
(1.00)
0.445
(1.00)
0.593
(1.00)
0.202
(1.00)
0.414
(1.00)
PHF13 14 (15%) 77 1
(1.00)
0.479
(1.00)
0.806
(1.00)
0.66
(1.00)
0.632
(1.00)
0.395
(1.00)
1
(1.00)
0.52
(1.00)
SLC6A9 8 (9%) 83 0.674
(1.00)
0.0824
(1.00)
0.801
(1.00)
0.515
(1.00)
0.294
(1.00)
0.795
(1.00)
1
(1.00)
0.565
(1.00)
STK19 5 (5%) 86 1
(1.00)
0.733
(1.00)
0.704
(1.00)
1
(1.00)
0.31
(1.00)
0.414
(1.00)
1
(1.00)
0.708
(1.00)
PANK2 10 (11%) 81 0.678
(1.00)
0.586
(1.00)
1
(1.00)
0.0437
(1.00)
0.407
(1.00)
1
(1.00)
0.831
(1.00)
0.909
(1.00)
ST6GALNAC5 16 (18%) 75 0.143
(1.00)
0.346
(1.00)
0.583
(1.00)
0.26
(1.00)
0.482
(1.00)
0.88
(1.00)
0.71
(1.00)
1
(1.00)
PTPLAD2 5 (5%) 86 0.837
(1.00)
0.622
(1.00)
0.102
(1.00)
0.0428
(1.00)
0.679
(1.00)
1
(1.00)
0.509
(1.00)
1
(1.00)
TNFSF9 19 (21%) 72 0.775
(1.00)
0.855
(1.00)
0.641
(1.00)
0.315
(1.00)
0.919
(1.00)
0.442
(1.00)
0.47
(1.00)
0.313
(1.00)
OTOF 19 (21%) 72 0.216
(1.00)
0.677
(1.00)
1
(1.00)
0.219
(1.00)
0.946
(1.00)
0.903
(1.00)
0.0864
(1.00)
0.722
(1.00)
ABCC2 14 (15%) 77 0.929
(1.00)
0.474
(1.00)
0.738
(1.00)
0.0759
(1.00)
0.278
(1.00)
0.875
(1.00)
0.468
(1.00)
0.925
(1.00)
MST1 15 (16%) 76 0.87
(1.00)
0.509
(1.00)
0.147
(1.00)
0.0587
(1.00)
0.0192
(1.00)
0.0383
(1.00)
0.082
(1.00)
0.056
(1.00)
SCD 9 (10%) 82 0.659
(1.00)
0.237
(1.00)
0.0081
(1.00)
0.0359
(1.00)
0.12
(1.00)
0.525
(1.00)
0.0622
(1.00)
0.538
(1.00)
FOXJ2 11 (12%) 80 0.466
(1.00)
0.555
(1.00)
0.919
(1.00)
0.0357
(1.00)
0.207
(1.00)
0.911
(1.00)
0.202
(1.00)
0.344
(1.00)
CCDC28B 16 (18%) 75 0.767
(1.00)
0.591
(1.00)
0.329
(1.00)
0.614
(1.00)
0.496
(1.00)
0.438
(1.00)
0.79
(1.00)
0.675
(1.00)
AJAP1 14 (15%) 77 1
(1.00)
0.628
(1.00)
0.413
(1.00)
0.134
(1.00)
0.71
(1.00)
1
(1.00)
0.337
(1.00)
1
(1.00)
CXXC4 13 (14%) 78 0.783
(1.00)
0.585
(1.00)
0.199
(1.00)
0.102
(1.00)
0.563
(1.00)
0.661
(1.00)
0.372
(1.00)
0.174
(1.00)
NAPSA 9 (10%) 82 0.158
(1.00)
0.409
(1.00)
1
(1.00)
0.138
(1.00)
0.407
(1.00)
0.891
(1.00)
0.637
(1.00)
0.898
(1.00)
SMAD4 17 (19%) 74 0.122
(1.00)
0.0246
(1.00)
0.0258
(1.00)
0.00178
(1.00)
0.0613
(1.00)
0.0632
(1.00)
0.00323
(1.00)
0.0322
(1.00)
DDX55 19 (21%) 72 0.465
(1.00)
0.663
(1.00)
0.0632
(1.00)
0.0819
(1.00)
0.135
(1.00)
0.684
(1.00)
0.801
(1.00)
0.905
(1.00)
TMEM41A 8 (9%) 83 0.889
(1.00)
0.367
(1.00)
0.441
(1.00)
0.0429
(1.00)
1
(1.00)
0.441
(1.00)
0.895
(1.00)
0.631
(1.00)
CYP20A1 9 (10%) 82 0.0445
(1.00)
0.292
(1.00)
0.251
(1.00)
0.0703
(1.00)
0.542
(1.00)
0.304
(1.00)
0.316
(1.00)
0.182
(1.00)
SLC34A2 10 (11%) 81 0.748
(1.00)
0.837
(1.00)
0.136
(1.00)
0.0872
(1.00)
0.899
(1.00)
0.145
(1.00)
0.314
(1.00)
0.125
(1.00)
ZNF207 8 (9%) 83 0.186
(1.00)
0.329
(1.00)
0.626
(1.00)
0.0125
(1.00)
0.294
(1.00)
0.308
(1.00)
0.4
(1.00)
0.399
(1.00)
SLITRK5 11 (12%) 80 0.538
(1.00)
0.134
(1.00)
0.497
(1.00)
0.0783
(1.00)
0.745
(1.00)
0.645
(1.00)
0.313
(1.00)
0.768
(1.00)
MMRN1 12 (13%) 79 0.511
(1.00)
0.495
(1.00)
0.84
(1.00)
0.137
(1.00)
1
(1.00)
0.771
(1.00)
0.503
(1.00)
0.595
(1.00)
MAP7D3 11 (12%) 80 1
(1.00)
0.92
(1.00)
0.231
(1.00)
0.0783
(1.00)
0.745
(1.00)
0.645
(1.00)
0.313
(1.00)
0.768
(1.00)
BTNL8 11 (12%) 80 0.538
(1.00)
0.555
(1.00)
0.84
(1.00)
0.0783
(1.00)
1
(1.00)
0.401
(1.00)
0.77
(1.00)
0.7
(1.00)
SERTAD1 7 (8%) 84 0.3
(1.00)
0.789
(1.00)
0.455
(1.00)
0.0646
(1.00)
0.49
(1.00)
0.672
(1.00)
0.602
(1.00)
1
(1.00)
SYT2 9 (10%) 82 0.592
(1.00)
0.263
(1.00)
0.277
(1.00)
0.172
(1.00)
0.47
(1.00)
0.341
(1.00)
0.817
(1.00)
0.742
(1.00)
ZFP36 8 (9%) 83 0.186
(1.00)
0.0401
(1.00)
0.0491
(1.00)
0.0826
(1.00)
0.0212
(1.00)
0.125
(1.00)
0.127
(1.00)
0.0933
(1.00)
UHRF1BP1 11 (12%) 80 0.587
(1.00)
1
(1.00)
0.919
(1.00)
0.0357
(1.00)
0.0263
(1.00)
0.441
(1.00)
0.313
(1.00)
0.344
(1.00)
TTK 9 (10%) 82 0.659
(1.00)
0.743
(1.00)
0.902
(1.00)
0.128
(1.00)
0.622
(1.00)
1
(1.00)
0.672
(1.00)
1
(1.00)
CCDC135 9 (10%) 82 0.9
(1.00)
0.33
(1.00)
0.902
(1.00)
0.128
(1.00)
0.729
(1.00)
1
(1.00)
0.817
(1.00)
1
(1.00)
TNFRSF9 6 (7%) 85 0.868
(1.00)
0.497
(1.00)
0.0502
(1.00)
0.248
(1.00)
0.119
(1.00)
0.74
(1.00)
0.307
(1.00)
0.862
(1.00)
UBL4A 5 (5%) 86 0.837
(1.00)
1
(1.00)
0.188
(1.00)
1
(1.00)
0.858
(1.00)
0.839
(1.00)
0.852
(1.00)
0.848
(1.00)
PURB 6 (7%) 85 0.868
(1.00)
0.232
(1.00)
1
(1.00)
1
(1.00)
0.498
(1.00)
0.649
(1.00)
0.758
(1.00)
0.409
(1.00)
GABBR1 10 (11%) 81 0.512
(1.00)
0.917
(1.00)
0.221
(1.00)
0.117
(1.00)
0.706
(1.00)
1
(1.00)
0.349
(1.00)
1
(1.00)
ADAM30 9 (10%) 82 0.0613
(1.00)
0.614
(1.00)
1
(1.00)
0.751
(1.00)
0.664
(1.00)
1
(1.00)
0.479
(1.00)
0.9
(1.00)
NR4A3 7 (8%) 84 1
(1.00)
0.0384
(1.00)
0.592
(1.00)
0.0426
(1.00)
0.854
(1.00)
0.877
(1.00)
0.682
(1.00)
0.888
(1.00)
MAMSTR 5 (5%) 86 0.224
(1.00)
0.622
(1.00)
0.018
(1.00)
1
(1.00)
0.0251
(1.00)
0.201
(1.00)
0.0344
(1.00)
0.087
(1.00)
ZC3H7B 9 (10%) 82 0.158
(1.00)
0.263
(1.00)
1
(1.00)
0.0703
(1.00)
0.268
(1.00)
0.728
(1.00)
0.0545
(1.00)
0.0525
(1.00)
IFFO1 8 (9%) 83 0.558
(1.00)
0.262
(1.00)
0.121
(1.00)
0.11
(1.00)
0.422
(1.00)
0.27
(1.00)
0.712
(1.00)
0.5
(1.00)
C6ORF165 8 (9%) 83 0.27
(1.00)
0.456
(1.00)
0.348
(1.00)
0.00112
(1.00)
0.115
(1.00)
0.125
(1.00)
0.0743
(1.00)
0.0933
(1.00)
RBM33 9 (10%) 82 0.194
(1.00)
0.908
(1.00)
0.0713
(1.00)
0.0359
(1.00)
0.205
(1.00)
0.148
(1.00)
0.204
(1.00)
0.285
(1.00)
OSBPL1A 9 (10%) 82 0.733
(1.00)
0.237
(1.00)
0.902
(1.00)
0.0703
(1.00)
0.884
(1.00)
1
(1.00)
0.672
(1.00)
1
(1.00)
PPP1R10 11 (12%) 80 0.338
(1.00)
0.0702
(1.00)
0.0106
(1.00)
0.21
(1.00)
0.16
(1.00)
0.106
(1.00)
0.102
(1.00)
0.308
(1.00)
TIMM50 8 (9%) 83 0.889
(1.00)
0.895
(1.00)
0.801
(1.00)
0.138
(1.00)
0.378
(1.00)
0.795
(1.00)
0.637
(1.00)
0.565
(1.00)
TMED10 6 (7%) 85 0.868
(1.00)
0.435
(1.00)
1
(1.00)
0.048
(1.00)
0.688
(1.00)
0.858
(1.00)
0.758
(1.00)
0.758
(1.00)
YIPF2 8 (9%) 83 0.797
(1.00)
1
(1.00)
0.892
(1.00)
0.138
(1.00)
0.527
(1.00)
0.795
(1.00)
0.712
(1.00)
0.565
(1.00)
TSC22D1 10 (11%) 81 0.81
(1.00)
0.335
(1.00)
0.832
(1.00)
0.15
(1.00)
0.585
(1.00)
0.364
(1.00)
0.755
(1.00)
0.421
(1.00)
ARFGAP3 7 (8%) 84 0.884
(1.00)
0.616
(1.00)
0.455
(1.00)
1
(1.00)
0.811
(1.00)
0.768
(1.00)
0.355
(1.00)
0.362
(1.00)
CRYGA 4 (4%) 87 1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.675
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
PUM2 8 (9%) 83 0.27
(1.00)
0.895
(1.00)
0.16
(1.00)
0.0125
(1.00)
0.294
(1.00)
0.308
(1.00)
0.127
(1.00)
0.399
(1.00)
YTHDF1 8 (9%) 83 1
(1.00)
1
(1.00)
0.182
(1.00)
0.515
(1.00)
0.509
(1.00)
0.176
(1.00)
0.565
(1.00)
0.353
(1.00)
PLAU 7 (8%) 84 0.0506
(1.00)
0.0195
(1.00)
0.262
(1.00)
0.0249
(1.00)
0.0237
(1.00)
0.129
(1.00)
0.00284
(1.00)
0.018
(1.00)
SOS1 11 (12%) 80 0.909
(1.00)
0.781
(1.00)
0.906
(1.00)
0.0437
(1.00)
0.373
(1.00)
0.502
(1.00)
0.91
(1.00)
0.515
(1.00)
DPYS 8 (9%) 83 1
(1.00)
0.233
(1.00)
1
(1.00)
0.0429
(1.00)
0.718
(1.00)
0.891
(1.00)
0.637
(1.00)
0.898
(1.00)
CPLX3 4 (4%) 87 0.176
(1.00)
0.243
(1.00)
0.0639
(1.00)
0.185
(1.00)
0.00627
(1.00)
0.037
(1.00)
0.00251
(1.00)
0.0111
(1.00)
RUNX2 11 (12%) 80 0.338
(1.00)
0.157
(1.00)
0.763
(1.00)
0.0783
(1.00)
0.16
(1.00)
0.441
(1.00)
0.313
(1.00)
0.344
(1.00)
BCL7C 4 (4%) 87 0.805
(1.00)
0.448
(1.00)
0.68
(1.00)
0.645
(1.00)
0.742
(1.00)
0.829
(1.00)
0.353
(1.00)
0.682
(1.00)
RGS22 11 (12%) 80 0.838
(1.00)
0.507
(1.00)
0.305
(1.00)
0.405
(1.00)
0.282
(1.00)
0.911
(1.00)
0.647
(1.00)
0.7
(1.00)
ERCC3 8 (9%) 83 0.716
(1.00)
0.409
(1.00)
0.626
(1.00)
0.138
(1.00)
0.327
(1.00)
1
(1.00)
0.353
(1.00)
0.802
(1.00)
SYNCRIP 8 (9%) 83 0.797
(1.00)
1
(1.00)
0.39
(1.00)
0.11
(1.00)
0.95
(1.00)
0.621
(1.00)
0.712
(1.00)
0.707
(1.00)
AHDC1 8 (9%) 83 0.27
(1.00)
0.456
(1.00)
0.626
(1.00)
0.0125
(1.00)
0.392
(1.00)
0.308
(1.00)
0.895
(1.00)
0.399
(1.00)
CLOCK 9 (10%) 82 0.479
(1.00)
0.409
(1.00)
1
(1.00)
0.138
(1.00)
0.779
(1.00)
1
(1.00)
0.4
(1.00)
0.802
(1.00)
LRIG1 11 (12%) 80 0.492
(1.00)
0.92
(1.00)
0.919
(1.00)
0.0783
(1.00)
0.745
(1.00)
0.911
(1.00)
0.313
(1.00)
0.7
(1.00)
SEPT10 7 (8%) 84 0.26
(1.00)
0.103
(1.00)
0.885
(1.00)
0.0249
(1.00)
0.0505
(1.00)
0.672
(1.00)
0.602
(1.00)
0.169
(1.00)
BRD9 7 (8%) 84 0.674
(1.00)
0.103
(1.00)
0.523
(1.00)
0.172
(1.00)
0.445
(1.00)
0.672
(1.00)
0.202
(1.00)
0.676
(1.00)
HMGB3 4 (4%) 87 0.805
(1.00)
0.243
(1.00)
0.343
(1.00)
0.645
(1.00)
0.364
(1.00)
0.315
(1.00)
0.811
(1.00)
0.436
(1.00)
PAMR1 7 (8%) 84 0.143
(1.00)
0.421
(1.00)
0.402
(1.00)
0.0646
(1.00)
0.445
(1.00)
0.129
(1.00)
0.0783
(1.00)
0.414
(1.00)
ZNF704 5 (5%) 86 0.352
(1.00)
0.733
(1.00)
0.704
(1.00)
0.395
(1.00)
0.793
(1.00)
1
(1.00)
0.71
(1.00)
1
(1.00)
SYNGAP1 9 (10%) 82 0.3
(1.00)
0.673
(1.00)
0.179
(1.00)
0.096
(1.00)
0.685
(1.00)
0.903
(1.00)
0.352
(1.00)
0.742
(1.00)
FKBP15 8 (9%) 83 0.716
(1.00)
0.233
(1.00)
0.182
(1.00)
0.0429
(1.00)
0.221
(1.00)
0.0923
(1.00)
0.565
(1.00)
0.166
(1.00)
CAMTA1 10 (11%) 81 0.218
(1.00)
0.37
(1.00)
0.25
(1.00)
0.027
(1.00)
0.569
(1.00)
0.331
(1.00)
1
(1.00)
0.309
(1.00)
OXR1 5 (5%) 86 0.0339
(1.00)
0.00483
(1.00)
0.0779
(1.00)
0.202
(1.00)
0.858
(1.00)
0.267
(1.00)
0.195
(1.00)
0.298
(1.00)
ZNF184 9 (10%) 82 1
(1.00)
1
(1.00)
1
(1.00)
0.128
(1.00)
0.455
(1.00)
0.582
(1.00)
0.254
(1.00)
0.388
(1.00)
ACBD3 5 (5%) 86 1
(1.00)
0.849
(1.00)
0.704
(1.00)
0.0141
(1.00)
0.679
(1.00)
0.501
(1.00)
0.509
(1.00)
0.433
(1.00)
TOB1 4 (4%) 87 0.805
(1.00)
0.674
(1.00)
0.68
(1.00)
0.325
(1.00)
0.742
(1.00)
0.829
(1.00)
0.266
(1.00)
0.682
(1.00)
OR10Z1 6 (7%) 85 0.747
(1.00)
0.435
(1.00)
0.755
(1.00)
0.0273
(1.00)
1
(1.00)
0.74
(1.00)
0.561
(1.00)
0.862
(1.00)
BEGAIN 6 (7%) 85 0.306
(1.00)
1
(1.00)
0.219
(1.00)
0.095
(1.00)
0.688
(1.00)
0.858
(1.00)
0.865
(1.00)
0.862
(1.00)
TNKS2 7 (8%) 84 0.212
(1.00)
0.694
(1.00)
1
(1.00)
0.0646
(1.00)
0.621
(1.00)
0.593
(1.00)
0.682
(1.00)
0.78
(1.00)
SNIP1 6 (7%) 85 0.356
(1.00)
0.657
(1.00)
0.0737
(1.00)
0.0273
(1.00)
0.426
(1.00)
0.284
(1.00)
0.261
(1.00)
0.348
(1.00)
FAM134A 5 (5%) 86 0.707
(1.00)
0.849
(1.00)
1
(1.00)
0.667
(1.00)
0.927
(1.00)
0.839
(1.00)
0.852
(1.00)
0.848
(1.00)
SPRR4 3 (3%) 88 0.605
(1.00)
0.778
(1.00)
0.211
(1.00)
0.569
(1.00)
0.573
(1.00)
0.0915
(1.00)
0.453
(1.00)
0.158
(1.00)
RTKN2 6 (7%) 85 0.473
(1.00)
0.567
(1.00)
0.219
(1.00)
1
(1.00)
0.385
(1.00)
1
(1.00)
0.412
(1.00)
0.662
(1.00)
OR2T33 6 (7%) 85 0.0667
(1.00)
0.0692
(1.00)
0.299
(1.00)
0.0126
(1.00)
0.258
(1.00)
0.649
(1.00)
0.226
(1.00)
0.473
(1.00)
OR5A1 8 (9%) 83 0.636
(1.00)
0.586
(1.00)
1
(1.00)
0.0429
(1.00)
0.184
(1.00)
0.795
(1.00)
0.637
(1.00)
0.565
(1.00)
RBMXL1 4 (4%) 87 0.805
(1.00)
0.557
(1.00)
0.559
(1.00)
0.645
(1.00)
0.561
(1.00)
0.037
(1.00)
1
(1.00)
0.682
(1.00)
CD93 8 (9%) 83 1
(1.00)
0.0726
(1.00)
0.16
(1.00)
0.11
(1.00)
0.456
(1.00)
0.891
(1.00)
0.353
(1.00)
0.898
(1.00)
HVCN1 4 (4%) 87 0.805
(1.00)
1
(1.00)
0.00201
(1.00)
0.185
(1.00)
0.0312
(1.00)
0.0207
(1.00)
0.0103
(1.00)
0.0437
(1.00)
OTX1 7 (8%) 84 0.674
(1.00)
0.616
(1.00)
1
(1.00)
0.0426
(1.00)
0.9
(1.00)
0.399
(1.00)
0.682
(1.00)
0.226
(1.00)
PRKCH 5 (5%) 86 0.423
(1.00)
0.119
(1.00)
0.426
(1.00)
0.0141
(1.00)
0.0924
(1.00)
0.0781
(1.00)
1
(1.00)
0.0492
(1.00)
LIMD1 7 (8%) 84 0.674
(1.00)
0.421
(1.00)
0.455
(1.00)
0.0646
(1.00)
0.279
(1.00)
0.253
(1.00)
0.602
(1.00)
0.466
(1.00)
C15ORF52 4 (4%) 87 0.671
(1.00)
0.243
(1.00)
0.559
(1.00)
0.185
(1.00)
0.213
(1.00)
0.668
(1.00)
1
(1.00)
0.813
(1.00)
ZNF552 10 (11%) 81 0.81
(1.00)
1
(1.00)
0.832
(1.00)
0.0186
(1.00)
0.0569
(1.00)
0.204
(1.00)
0.171
(1.00)
0.112
(1.00)
TFDP2 3 (3%) 88 1
(1.00)
0.778
(1.00)
0.795
(1.00)
0.569
(1.00)
0.498
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
CACNA1D 11 (12%) 80 0.637
(1.00)
0.0933
(1.00)
0.703
(1.00)
0.0545
(1.00)
0.641
(1.00)
0.839
(1.00)
0.92
(1.00)
0.842
(1.00)
SEC31A 11 (12%) 80 0.7
(1.00)
0.849
(1.00)
0.703
(1.00)
0.172
(1.00)
0.81
(1.00)
1
(1.00)
1
(1.00)
0.768
(1.00)
RETN 3 (3%) 88 0.201
(1.00)
0.266
(1.00)
0.314
(1.00)
0.315
(1.00)
0.573
(1.00)
0.298
(1.00)
0.324
(1.00)
0.316
(1.00)
PRKCD 7 (8%) 84 0.591
(1.00)
0.366
(1.00)
0.352
(1.00)
0.00719
(1.00)
0.854
(1.00)
0.399
(1.00)
0.113
(1.00)
0.226
(1.00)
ZNF326 5 (5%) 86 0.423
(1.00)
0.254
(1.00)
0.704
(1.00)
0.0141
(1.00)
0.0924
(1.00)
0.501
(1.00)
0.147
(1.00)
0.433
(1.00)
MED12L 13 (14%) 78 0.85
(1.00)
0.803
(1.00)
0.494
(1.00)
0.0759
(1.00)
0.457
(1.00)
0.805
(1.00)
0.69
(1.00)
1
(1.00)
ATP2B3 6 (7%) 85 0.473
(1.00)
1
(1.00)
0.219
(1.00)
0.095
(1.00)
0.189
(1.00)
0.406
(1.00)
1
(1.00)
0.662
(1.00)
FNDC7 6 (7%) 85 0.54
(1.00)
0.567
(1.00)
0.219
(1.00)
1
(1.00)
0.061
(1.00)
0.103
(1.00)
0.471
(1.00)
0.16
(1.00)
RBM45 6 (7%) 85 0.473
(1.00)
0.375
(1.00)
0.861
(1.00)
0.095
(1.00)
0.734
(1.00)
1
(1.00)
0.758
(1.00)
1
(1.00)
INF2 8 (9%) 83 0.43
(1.00)
0.329
(1.00)
0.801
(1.00)
0.0429
(1.00)
0.378
(1.00)
0.546
(1.00)
0.244
(1.00)
0.447
(1.00)
PARP3 4 (4%) 87 1
(1.00)
1
(1.00)
0.559
(1.00)
0.645
(1.00)
0.894
(1.00)
0.668
(1.00)
0.45
(1.00)
0.813
(1.00)
CDO1 5 (5%) 86 0.504
(1.00)
0.213
(1.00)
0.848
(1.00)
1
(1.00)
0.419
(1.00)
1
(1.00)
1
(1.00)
0.507
(1.00)
FAM98A 4 (4%) 87 0.448
(1.00)
0.305
(1.00)
0.441
(1.00)
1
(1.00)
0.508
(1.00)
0.243
(1.00)
0.564
(1.00)
0.345
(1.00)
RBM24 3 (3%) 88 1
(1.00)
0.266
(1.00)
0.44
(1.00)
1
(1.00)
0.426
(1.00)
0.591
(1.00)
0.235
(1.00)
0.456
(1.00)
AAMP 4 (4%) 87 1
(1.00)
0.557
(1.00)
0.255
(1.00)
0.645
(1.00)
0.0788
(1.00)
0.179
(1.00)
0.683
(1.00)
0.262
(1.00)
KBTBD4 4 (4%) 87 0.117
(1.00)
0.305
(1.00)
0.255
(1.00)
1
(1.00)
0.675
(1.00)
0.243
(1.00)
0.683
(1.00)
0.345
(1.00)
KCTD19 5 (5%) 86 0.837
(1.00)
0.622
(1.00)
0.188
(1.00)
0.065
(1.00)
0.927
(1.00)
0.839
(1.00)
1
(1.00)
0.848
(1.00)
EPS8L3 6 (7%) 85 0.212
(1.00)
0.497
(1.00)
1
(1.00)
0.0428
(1.00)
0.679
(1.00)
1
(1.00)
0.509
(1.00)
0.507
(1.00)
HMX2 5 (5%) 86 0.0726
(1.00)
0.176
(1.00)
0.426
(1.00)
0.0141
(1.00)
0.123
(1.00)
0.0781
(1.00)
0.0504
(1.00)
0.0492
(1.00)
C19ORF47 4 (4%) 87 0.671
(1.00)
0.369
(1.00)
1
(1.00)
0.0263
(1.00)
0.0655
(1.00)
0.401
(1.00)
0.266
(1.00)
0.2
(1.00)
NARG2 16 (18%) 75 0.161
(1.00)
0.00942
(1.00)
0.0497
(1.00)
0.00178
(1.00)
0.0498
(1.00)
0.199
(1.00)
0.00485
(1.00)
0.0384
(1.00)
ZC3H4 9 (10%) 82 0.9
(1.00)
1
(1.00)
0.108
(1.00)
0.0646
(1.00)
0.0391
(1.00)
0.0271
(1.00)
0.132
(1.00)
0.0645
(1.00)
TIGD7 4 (4%) 87 1
(1.00)
0.0892
(1.00)
0.441
(1.00)
0.0639
(1.00)
0.894
(1.00)
1
(1.00)
0.811
(1.00)
1
(1.00)
TATDN2 7 (8%) 84 0.591
(1.00)
0.888
(1.00)
0.592
(1.00)
0.0426
(1.00)
0.71
(1.00)
0.877
(1.00)
0.682
(1.00)
0.888
(1.00)
GSTA1 5 (5%) 86 0.423
(1.00)
0.733
(1.00)
1
(1.00)
1
(1.00)
0.73
(1.00)
0.598
(1.00)
0.852
(1.00)
0.603
(1.00)
PDZD7 7 (8%) 84 0.345
(1.00)
0.481
(1.00)
0.352
(1.00)
0.0924
(1.00)
0.592
(1.00)
0.399
(1.00)
0.467
(1.00)
0.414
(1.00)
SPRY4 3 (3%) 88 1
(1.00)
0.778
(1.00)
0.596
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
ZMYND19 4 (4%) 87 0.257
(1.00)
0.674
(1.00)
0.441
(1.00)
0.0639
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
SULT1B1 4 (4%) 87 0.805
(1.00)
1
(1.00)
0.559
(1.00)
0.0263
(1.00)
0.213
(1.00)
0.401
(1.00)
0.0256
(1.00)
0.2
(1.00)
WDR88 6 (7%) 85 0.54
(1.00)
0.375
(1.00)
0.181
(1.00)
0.048
(1.00)
0.836
(1.00)
0.563
(1.00)
0.656
(1.00)
0.566
(1.00)
PSME4 8 (9%) 83 0.212
(1.00)
0.0925
(1.00)
0.56
(1.00)
0.11
(1.00)
0.663
(1.00)
0.705
(1.00)
1
(1.00)
1
(1.00)
TMC7 4 (4%) 87 1
(1.00)
0.827
(1.00)
0.441
(1.00)
0.0639
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
FTH1 3 (3%) 88 0.798
(1.00)
0.621
(1.00)
0.596
(1.00)
1
(1.00)
1
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
MRPS5 6 (7%) 85 0.747
(1.00)
0.435
(1.00)
0.861
(1.00)
0.095
(1.00)
0.734
(1.00)
1
(1.00)
0.758
(1.00)
1
(1.00)
RAI1 8 (9%) 83 1
(1.00)
1
(1.00)
0.801
(1.00)
0.0429
(1.00)
0.779
(1.00)
0.546
(1.00)
0.244
(1.00)
0.447
(1.00)
RUNX1T1 8 (9%) 83 0.797
(1.00)
0.293
(1.00)
0.39
(1.00)
0.11
(1.00)
0.23
(1.00)
1
(1.00)
0.507
(1.00)
0.707
(1.00)
CCDC130 5 (5%) 86 0.352
(1.00)
0.119
(1.00)
0.5
(1.00)
0.0229
(1.00)
0.0335
(1.00)
0.715
(1.00)
0.71
(1.00)
0.603
(1.00)
ADAL 4 (4%) 87 0.671
(1.00)
0.557
(1.00)
0.795
(1.00)
0.569
(1.00)
0.426
(1.00)
0.591
(1.00)
0.235
(1.00)
0.456
(1.00)
TWISTNB 5 (5%) 86 1
(1.00)
0.304
(1.00)
0.245
(1.00)
0.065
(1.00)
0.679
(1.00)
0.201
(1.00)
0.509
(1.00)
0.433
(1.00)
CSNK1G3 6 (7%) 85 1
(1.00)
0.176
(1.00)
0.301
(1.00)
0.395
(1.00)
0.123
(1.00)
0.501
(1.00)
0.509
(1.00)
0.433
(1.00)
PLCZ1 4 (4%) 87 1
(1.00)
0.674
(1.00)
0.0412
(1.00)
0.645
(1.00)
0.894
(1.00)
1
(1.00)
0.811
(1.00)
1
(1.00)
CDC25A 3 (3%) 88 0.798
(1.00)
1
(1.00)
0.596
(1.00)
1
(1.00)
0.652
(1.00)
0.41
(1.00)
0.793
(1.00)
0.596
(1.00)
UNC5D 8 (9%) 83 0.716
(1.00)
0.895
(1.00)
0.235
(1.00)
0.138
(1.00)
0.339
(1.00)
0.232
(1.00)
0.244
(1.00)
0.124
(1.00)
KRTAP5-7 3 (3%) 88 0.0715
(1.00)
0.361
(1.00)
0.314
(1.00)
0.315
(1.00)
0.749
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
CPSF3 3 (3%) 88 0.428
(1.00)
0.111
(1.00)
0.139
(1.00)
0.0829
(1.00)
0.0939
(1.00)
0.217
(1.00)
0.0911
(1.00)
0.228
(1.00)
CA5A 3 (3%) 88 0.605
(1.00)
0.778
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
TSFM 4 (4%) 87 1
(1.00)
1
(1.00)
0.68
(1.00)
1
(1.00)
0.238
(1.00)
0.829
(1.00)
1
(1.00)
0.682
(1.00)
DNAJC12 3 (3%) 88 0.121
(1.00)
0.361
(1.00)
0.314
(1.00)
0.315
(1.00)
0.212
(1.00)
0.298
(1.00)
0.324
(1.00)
0.316
(1.00)
NPM2 3 (3%) 88 0.428
(1.00)
0.111
(1.00)
0.0343
(1.00)
0.0829
(1.00)
0.0939
(1.00)
0.139
(1.00)
0.235
(1.00)
0.0409
(1.00)
APOA1BP 5 (5%) 86 0.707
(1.00)
0.304
(1.00)
1
(1.00)
0.0428
(1.00)
0.45
(1.00)
1
(1.00)
0.852
(1.00)
1
(1.00)
DDX10 7 (8%) 84 0.169
(1.00)
0.283
(1.00)
0.402
(1.00)
0.0249
(1.00)
0.0861
(1.00)
0.215
(1.00)
0.0783
(1.00)
0.194
(1.00)
USP4 9 (10%) 82 0.158
(1.00)
0.263
(1.00)
0.251
(1.00)
0.0359
(1.00)
0.176
(1.00)
0.728
(1.00)
0.316
(1.00)
0.318
(1.00)
SLC7A9 6 (7%) 85 1
(1.00)
1
(1.00)
0.861
(1.00)
0.048
(1.00)
0.785
(1.00)
0.482
(1.00)
0.758
(1.00)
0.473
(1.00)
CDH10 14 (15%) 77 0.38
(1.00)
0.371
(1.00)
0.738
(1.00)
0.209
(1.00)
0.18
(1.00)
0.805
(1.00)
0.805
(1.00)
1
(1.00)
SNRNP35 5 (5%) 86 1
(1.00)
0.254
(1.00)
1
(1.00)
0.0428
(1.00)
0.679
(1.00)
0.598
(1.00)
0.509
(1.00)
0.433
(1.00)
SPINT1 5 (5%) 86 0.707
(1.00)
0.849
(1.00)
0.848
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.71
(1.00)
1
(1.00)
SMARCA2 7 (8%) 84 0.345
(1.00)
1
(1.00)
0.402
(1.00)
0.0249
(1.00)
0.467
(1.00)
0.107
(1.00)
0.202
(1.00)
0.169
(1.00)
RHOU 3 (3%) 88 0.0285
(1.00)
0.0555
(1.00)
0.314
(1.00)
0.315
(1.00)
0.212
(1.00)
0.298
(1.00)
0.324
(1.00)
0.316
(1.00)
NOLC1 4 (4%) 87 1
(1.00)
1
(1.00)
0.0904
(1.00)
0.185
(1.00)
0.0181
(1.00)
0.668
(1.00)
0.107
(1.00)
0.813
(1.00)
CDK5 3 (3%) 88 0.605
(1.00)
0.483
(1.00)
0.44
(1.00)
0.569
(1.00)
0.426
(1.00)
0.591
(1.00)
0.601
(1.00)
0.456
(1.00)
HIRA 7 (8%) 84 0.345
(1.00)
0.694
(1.00)
0.0885
(1.00)
0.172
(1.00)
0.95
(1.00)
0.672
(1.00)
0.602
(1.00)
0.676
(1.00)
GIGYF2 9 (10%) 82 1
(1.00)
1
(1.00)
0.379
(1.00)
0.751
(1.00)
0.542
(1.00)
1
(1.00)
1
(1.00)
0.673
(1.00)
KCNA4 9 (10%) 82 0.81
(1.00)
0.00191
(1.00)
0.0901
(1.00)
0.128
(1.00)
0.542
(1.00)
1
(1.00)
0.604
(1.00)
0.673
(1.00)
COL22A1 10 (11%) 81 1
(1.00)
0.917
(1.00)
0.56
(1.00)
0.117
(1.00)
0.0495
(1.00)
0.0667
(1.00)
0.00473
(1.00)
0.0606
(1.00)
RBM43 4 (4%) 87 0.555
(1.00)
0.131
(1.00)
0.795
(1.00)
1
(1.00)
0.857
(1.00)
0.783
(1.00)
0.793
(1.00)
1
(1.00)
ZNF880 4 (4%) 87 0.555
(1.00)
0.827
(1.00)
1
(1.00)
0.645
(1.00)
0.561
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
ACE 6 (7%) 85 0.632
(1.00)
0.375
(1.00)
0.861
(1.00)
0.0126
(1.00)
0.165
(1.00)
0.482
(1.00)
0.561
(1.00)
0.566
(1.00)
CDK8 6 (7%) 85 0.0836
(1.00)
0.0838
(1.00)
0.755
(1.00)
0.048
(1.00)
0.836
(1.00)
1
(1.00)
1
(1.00)
0.566
(1.00)
MGA 11 (12%) 80 0.492
(1.00)
0.721
(1.00)
0.279
(1.00)
0.137
(1.00)
0.263
(1.00)
1
(1.00)
0.843
(1.00)
0.842
(1.00)
NUCB1 5 (5%) 86 1
(1.00)
0.733
(1.00)
0.245
(1.00)
0.667
(1.00)
0.419
(1.00)
0.267
(1.00)
1
(1.00)
0.708
(1.00)
PPIL6 4 (4%) 87 0.671
(1.00)
0.369
(1.00)
0.343
(1.00)
0.185
(1.00)
0.0525
(1.00)
0.668
(1.00)
0.075
(1.00)
0.813
(1.00)
FKBP7 5 (5%) 86 0.103
(1.00)
0.0282
(1.00)
0.255
(1.00)
0.0639
(1.00)
0.0525
(1.00)
1
(1.00)
0.075
(1.00)
1
(1.00)
NTAN1 4 (4%) 87 0.805
(1.00)
1
(1.00)
0.343
(1.00)
0.645
(1.00)
0.364
(1.00)
0.315
(1.00)
0.811
(1.00)
0.436
(1.00)
PPP1R12C 6 (7%) 85 1
(1.00)
1
(1.00)
0.345
(1.00)
0.095
(1.00)
0.0404
(1.00)
0.74
(1.00)
0.561
(1.00)
0.662
(1.00)
RAI2 5 (5%) 86 0.504
(1.00)
1
(1.00)
0.5
(1.00)
0.667
(1.00)
0.858
(1.00)
0.715
(1.00)
0.852
(1.00)
0.848
(1.00)
SLAIN1 3 (3%) 88 0.428
(1.00)
0.483
(1.00)
0.795
(1.00)
0.00488
(1.00)
0.0252
(1.00)
0.139
(1.00)
0.012
(1.00)
0.0409
(1.00)
ACVR2A 6 (7%) 85 0.212
(1.00)
0.435
(1.00)
0.552
(1.00)
0.095
(1.00)
0.0484
(1.00)
0.0314
(1.00)
0.358
(1.00)
0.191
(1.00)
NTF3 6 (7%) 85 0.707
(1.00)
0.657
(1.00)
0.0974
(1.00)
0.248
(1.00)
0.0484
(1.00)
0.335
(1.00)
0.865
(1.00)
0.129
(1.00)
C9ORF69 4 (4%) 87 1
(1.00)
0.674
(1.00)
0.255
(1.00)
0.0639
(1.00)
0.323
(1.00)
0.829
(1.00)
0.45
(1.00)
0.682
(1.00)
KIAA0430 8 (9%) 83 0.636
(1.00)
0.656
(1.00)
0.121
(1.00)
0.11
(1.00)
0.95
(1.00)
0.705
(1.00)
1
(1.00)
0.5
(1.00)
MED12 6 (7%) 85 0.0506
(1.00)
0.0552
(1.00)
0.651
(1.00)
0.00625
(1.00)
0.0269
(1.00)
0.235
(1.00)
0.865
(1.00)
0.191
(1.00)
WIPF2 4 (4%) 87 0.671
(1.00)
0.243
(1.00)
0.559
(1.00)
0.00233
(1.00)
0.0655
(1.00)
0.137
(1.00)
0.0256
(1.00)
0.0726
(1.00)
IKZF5 3 (3%) 88 0.201
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
ACIN1 4 (4%) 87 0.671
(1.00)
0.369
(1.00)
0.68
(1.00)
0.0263
(1.00)
0.0655
(1.00)
0.401
(1.00)
0.45
(1.00)
0.2
(1.00)
LRCH1 9 (10%) 82 0.592
(1.00)
0.743
(1.00)
0.0081
(1.00)
0.0359
(1.00)
0.124
(1.00)
0.148
(1.00)
0.0286
(1.00)
0.285
(1.00)
CNGB1 7 (8%) 84 0.12
(1.00)
0.323
(1.00)
0.455
(1.00)
0.0924
(1.00)
1
(1.00)
0.768
(1.00)
0.779
(1.00)
0.598
(1.00)
ATP4A 10 (11%) 81 0.242
(1.00)
0.837
(1.00)
0.62
(1.00)
0.15
(1.00)
0.444
(1.00)
0.825
(1.00)
0.755
(1.00)
0.691
(1.00)
HSD17B7 5 (5%) 86 1
(1.00)
0.304
(1.00)
0.5
(1.00)
0.202
(1.00)
0.516
(1.00)
0.715
(1.00)
0.852
(1.00)
0.848
(1.00)
EGR2 3 (3%) 88 1
(1.00)
0.778
(1.00)
0.139
(1.00)
0.0829
(1.00)
0.0939
(1.00)
0.139
(1.00)
0.159
(1.00)
0.0409
(1.00)
INTS7 9 (10%) 82 0.659
(1.00)
0.292
(1.00)
0.137
(1.00)
0.0359
(1.00)
0.0452
(1.00)
0.582
(1.00)
0.0241
(1.00)
0.388
(1.00)
RPL10 3 (3%) 88 0.428
(1.00)
0.111
(1.00)
0.139
(1.00)
0.569
(1.00)
0.0252
(1.00)
0.139
(1.00)
0.012
(1.00)
0.0409
(1.00)
SCRIB 7 (8%) 84 0.884
(1.00)
0.191
(1.00)
0.455
(1.00)
0.0924
(1.00)
0.0908
(1.00)
0.768
(1.00)
0.602
(1.00)
1
(1.00)
CYP11B2 4 (4%) 87 0.257
(1.00)
1
(1.00)
0.255
(1.00)
0.645
(1.00)
0.0948
(1.00)
0.315
(1.00)
0.811
(1.00)
0.436
(1.00)
BCL3 3 (3%) 88 0.307
(1.00)
0.361
(1.00)
0.314
(1.00)
0.0188
(1.00)
0.749
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
PHACTR2 6 (7%) 85 0.306
(1.00)
0.497
(1.00)
0.651
(1.00)
0.0273
(1.00)
0.688
(1.00)
0.284
(1.00)
0.561
(1.00)
0.862
(1.00)
AFF4 4 (4%) 87 0.448
(1.00)
0.827
(1.00)
0.343
(1.00)
0.645
(1.00)
0.29
(1.00)
1
(1.00)
0.075
(1.00)
1
(1.00)
UNC5A 6 (7%) 85 1
(1.00)
1
(1.00)
0.704
(1.00)
0.0428
(1.00)
0.633
(1.00)
1
(1.00)
0.509
(1.00)
1
(1.00)
TRPM8 4 (4%) 87 0.346
(1.00)
0.305
(1.00)
1
(1.00)
1
(1.00)
0.561
(1.00)
1
(1.00)
0.564
(1.00)
1
(1.00)
U2AF1 3 (3%) 88 1
(1.00)
1
(1.00)
0.795
(1.00)
0.569
(1.00)
0.498
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
CCDC88A 4 (4%) 87 0.671
(1.00)
1
(1.00)
1
(1.00)
0.645
(1.00)
0.894
(1.00)
0.668
(1.00)
0.683
(1.00)
0.436
(1.00)
NKAP 5 (5%) 86 0.593
(1.00)
0.0668
(1.00)
0.245
(1.00)
0.065
(1.00)
0.858
(1.00)
1
(1.00)
0.852
(1.00)
0.848
(1.00)
PCOLCE2 8 (9%) 83 0.143
(1.00)
0.809
(1.00)
0.56
(1.00)
0.138
(1.00)
0.611
(1.00)
0.705
(1.00)
1
(1.00)
1
(1.00)
NT5C2 3 (3%) 88 1
(1.00)
1
(1.00)
0.0792
(1.00)
1
(1.00)
0.26
(1.00)
0.783
(1.00)
0.159
(1.00)
1
(1.00)
CMTM1 3 (3%) 88 0.428
(1.00)
0.111
(1.00)
0.0792
(1.00)
0.0829
(1.00)
0.0939
(1.00)
0.217
(1.00)
0.0911
(1.00)
0.228
(1.00)
SPAG9 7 (8%) 84 0.868
(1.00)
0.694
(1.00)
1
(1.00)
0.0646
(1.00)
0.166
(1.00)
0.593
(1.00)
0.0783
(1.00)
0.194
(1.00)
PHTF2 7 (8%) 84 0.306
(1.00)
0.481
(1.00)
0.147
(1.00)
0.0249
(1.00)
0.0861
(1.00)
0.215
(1.00)
0.0127
(1.00)
0.194
(1.00)
HIST1H1B 4 (4%) 87 0.671
(1.00)
0.0892
(1.00)
0.343
(1.00)
0.0263
(1.00)
0.0525
(1.00)
0.0659
(1.00)
0.107
(1.00)
0.104
(1.00)
UTRN 5 (5%) 86 1
(1.00)
0.622
(1.00)
0.5
(1.00)
0.065
(1.00)
0.388
(1.00)
0.598
(1.00)
0.247
(1.00)
0.603
(1.00)
MAGEC1 13 (14%) 78 0.284
(1.00)
0.477
(1.00)
0.738
(1.00)
0.171
(1.00)
0.553
(1.00)
0.875
(1.00)
0.925
(1.00)
0.684
(1.00)
NUDT19 4 (4%) 87 0.805
(1.00)
0.674
(1.00)
0.255
(1.00)
0.0263
(1.00)
0.129
(1.00)
0.315
(1.00)
0.811
(1.00)
0.436
(1.00)
DDX60 11 (12%) 80 0.538
(1.00)
0.468
(1.00)
0.0168
(1.00)
0.0783
(1.00)
0.938
(1.00)
0.22
(1.00)
0.92
(1.00)
0.38
(1.00)
SLCO1B3 8 (9%) 83 0.636
(1.00)
0.293
(1.00)
0.121
(1.00)
0.11
(1.00)
0.565
(1.00)
0.621
(1.00)
0.712
(1.00)
0.707
(1.00)
INTS6 3 (3%) 88 1
(1.00)
0.778
(1.00)
0.0792
(1.00)
0.569
(1.00)
0.26
(1.00)
0.783
(1.00)
0.453
(1.00)
1
(1.00)
AP2A2 6 (7%) 85 0.356
(1.00)
0.877
(1.00)
0.755
(1.00)
0.0273
(1.00)
0.0484
(1.00)
0.235
(1.00)
0.0576
(1.00)
0.191
(1.00)
SMYD5 6 (7%) 85 0.632
(1.00)
0.0838
(1.00)
0.181
(1.00)
0.048
(1.00)
0.942
(1.00)
0.563
(1.00)
0.656
(1.00)
0.566
(1.00)
CXORF66 4 (4%) 87 1
(1.00)
0.557
(1.00)
0.808
(1.00)
1
(1.00)
0.364
(1.00)
0.526
(1.00)
0.353
(1.00)
0.554
(1.00)
NKTR 6 (7%) 85 0.356
(1.00)
0.877
(1.00)
0.651
(1.00)
0.00625
(1.00)
0.024
(1.00)
0.0314
(1.00)
0.0102
(1.00)
0.00977
(1.00)
RTEL1 7 (8%) 84 0.774
(1.00)
0.616
(1.00)
0.193
(1.00)
0.0924
(1.00)
0.9
(1.00)
0.877
(1.00)
0.682
(1.00)
0.888
(1.00)
BCL9L 6 (7%) 85 1
(1.00)
0.76
(1.00)
0.219
(1.00)
0.095
(1.00)
0.189
(1.00)
0.406
(1.00)
1
(1.00)
0.662
(1.00)
DDX5 5 (5%) 86 0.593
(1.00)
0.849
(1.00)
1
(1.00)
0.0428
(1.00)
0.927
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
PCDHB2 6 (7%) 85 0.868
(1.00)
0.877
(1.00)
1
(1.00)
0.0273
(1.00)
0.582
(1.00)
0.858
(1.00)
0.358
(1.00)
0.758
(1.00)
GBP5 5 (5%) 86 0.593
(1.00)
0.849
(1.00)
1
(1.00)
0.0428
(1.00)
0.45
(1.00)
0.598
(1.00)
0.71
(1.00)
0.365
(1.00)
SCYL3 7 (8%) 84 0.511
(1.00)
0.191
(1.00)
0.305
(1.00)
0.0924
(1.00)
0.539
(1.00)
0.519
(1.00)
0.525
(1.00)
0.313
(1.00)
RERE 6 (7%) 85 1
(1.00)
0.76
(1.00)
0.299
(1.00)
0.048
(1.00)
0.785
(1.00)
0.482
(1.00)
0.758
(1.00)
1
(1.00)
CDHR5 7 (8%) 84 0.591
(1.00)
0.219
(1.00)
0.455
(1.00)
1
(1.00)
0.71
(1.00)
1
(1.00)
0.602
(1.00)
0.888
(1.00)
SATB1 8 (9%) 83 0.169
(1.00)
0.895
(1.00)
0.801
(1.00)
0.138
(1.00)
0.637
(1.00)
0.058
(1.00)
0.244
(1.00)
0.124
(1.00)
SMCR7 9 (10%) 82 0.27
(1.00)
0.743
(1.00)
0.481
(1.00)
0.0703
(1.00)
0.238
(1.00)
0.341
(1.00)
0.0984
(1.00)
0.254
(1.00)
ZNF548 6 (7%) 85 0.473
(1.00)
0.657
(1.00)
1
(1.00)
0.095
(1.00)
0.888
(1.00)
0.858
(1.00)
0.758
(1.00)
0.758
(1.00)
DHX36 9 (10%) 82 0.123
(1.00)
0.743
(1.00)
1
(1.00)
0.0359
(1.00)
0.47
(1.00)
0.728
(1.00)
0.672
(1.00)
0.742
(1.00)
MMP14 6 (7%) 85 0.473
(1.00)
1
(1.00)
0.651
(1.00)
0.095
(1.00)
0.888
(1.00)
0.235
(1.00)
0.358
(1.00)
0.191
(1.00)
ZMYND8 7 (8%) 84 0.345
(1.00)
0.789
(1.00)
0.773
(1.00)
0.0646
(1.00)
0.592
(1.00)
0.154
(1.00)
1
(1.00)
0.226
(1.00)
TRERF1 6 (7%) 85 0.747
(1.00)
0.375
(1.00)
0.651
(1.00)
0.095
(1.00)
0.785
(1.00)
0.284
(1.00)
1
(1.00)
0.862
(1.00)
CYP4F3 3 (3%) 88 0.428
(1.00)
0.111
(1.00)
0.0792
(1.00)
0.0829
(1.00)
0.311
(1.00)
0.217
(1.00)
0.159
(1.00)
0.228
(1.00)
SYNPO2L 6 (7%) 85 0.0506
(1.00)
0.497
(1.00)
0.861
(1.00)
0.048
(1.00)
0.498
(1.00)
1
(1.00)
0.865
(1.00)
0.862
(1.00)
MICALCL 4 (4%) 87 0.257
(1.00)
0.827
(1.00)
0.808
(1.00)
0.0639
(1.00)
1
(1.00)
0.829
(1.00)
1
(1.00)
0.682
(1.00)
PPP1R12B 4 (4%) 87 0.555
(1.00)
0.827
(1.00)
0.255
(1.00)
0.645
(1.00)
0.616
(1.00)
0.179
(1.00)
0.683
(1.00)
0.262
(1.00)
ENG 3 (3%) 88 0.428
(1.00)
0.111
(1.00)
0.0792
(1.00)
0.0829
(1.00)
0.0133
(1.00)
0.0449
(1.00)
0.159
(1.00)
0.0893
(1.00)
ZHX3 6 (7%) 85 1
(1.00)
0.275
(1.00)
0.848
(1.00)
0.065
(1.00)
0.36
(1.00)
0.201
(1.00)
0.509
(1.00)
0.365
(1.00)
SLCO2A1 5 (5%) 86 0.593
(1.00)
1
(1.00)
0.596
(1.00)
0.0428
(1.00)
0.226
(1.00)
0.598
(1.00)
0.71
(1.00)
0.365
(1.00)
PHRF1 7 (8%) 84 0.26
(1.00)
0.103
(1.00)
0.773
(1.00)
0.0249
(1.00)
0.0391
(1.00)
0.154
(1.00)
0.00718
(1.00)
0.0645
(1.00)
PUS7 4 (4%) 87 0.605
(1.00)
0.448
(1.00)
0.343
(1.00)
0.185
(1.00)
0.29
(1.00)
0.315
(1.00)
0.811
(1.00)
1
(1.00)
FLAD1 5 (5%) 86 0.504
(1.00)
0.733
(1.00)
0.704
(1.00)
0.0141
(1.00)
0.147
(1.00)
0.501
(1.00)
0.147
(1.00)
0.433
(1.00)
PDE12 3 (3%) 88 0.483
(1.00)
0.795
(1.00)
0.569
(1.00)
0.164
(1.00)
0.591
(1.00)
0.235
(1.00)
0.456
(1.00)
PNMA3 4 (4%) 87 0.805
(1.00)
0.448
(1.00)
0.343
(1.00)
0.185
(1.00)
0.364
(1.00)
0.315
(1.00)
0.196
(1.00)
0.436
(1.00)
CEP72 5 (5%) 86 0.504
(1.00)
1
(1.00)
0.245
(1.00)
0.065
(1.00)
0.73
(1.00)
0.715
(1.00)
0.852
(1.00)
0.603
(1.00)
COL5A1 10 (11%) 81 0.618
(1.00)
0.694
(1.00)
0.08
(1.00)
0.096
(1.00)
0.753
(1.00)
0.213
(1.00)
0.742
(1.00)
0.352
(1.00)
HIST1H1A 4 (4%) 87 0.176
(1.00)
0.243
(1.00)
0.559
(1.00)
0.00233
(1.00)
0.213
(1.00)
0.137
(1.00)
0.075
(1.00)
0.0726
(1.00)
WHSC1L1 5 (5%) 86 1
(1.00)
1
(1.00)
0.359
(1.00)
1
(1.00)
0.633
(1.00)
0.598
(1.00)
0.71
(1.00)
0.365
(1.00)
MTFMT 3 (3%) 88 0.428
(1.00)
0.184
(1.00)
0.44
(1.00)
0.315
(1.00)
1
(1.00)
0.139
(1.00)
0.235
(1.00)
0.456
(1.00)
KIAA2018 7 (8%) 84 0.591
(1.00)
0.366
(1.00)
0.127
(1.00)
0.0924
(1.00)
0.565
(1.00)
0.454
(1.00)
0.779
(1.00)
0.598
(1.00)
EDN1 3 (3%) 88 0.605
(1.00)
0.266
(1.00)
1
(1.00)
0.0188
(1.00)
1
(1.00)
0.591
(1.00)
0.235
(1.00)
0.456
(1.00)
LRRC41 5 (5%) 86 0.593
(1.00)
0.733
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.839
(1.00)
0.597
(1.00)
0.708
(1.00)
EIF5B 7 (8%) 84 0.3
(1.00)
0.789
(1.00)
0.678
(1.00)
0.0646
(1.00)
0.315
(1.00)
0.399
(1.00)
0.41
(1.00)
0.226
(1.00)
AFF3 11 (12%) 80 0.152
(1.00)
0.235
(1.00)
0.129
(1.00)
0.0545
(1.00)
0.193
(1.00)
0.248
(1.00)
0.0282
(1.00)
0.125
(1.00)
MEGF10 7 (8%) 84 1
(1.00)
1
(1.00)
0.455
(1.00)
0.0646
(1.00)
0.39
(1.00)
0.768
(1.00)
0.355
(1.00)
1
(1.00)
KBTBD7 3 (3%) 88 1
(1.00)
0.266
(1.00)
0.211
(1.00)
0.569
(1.00)
0.573
(1.00)
0.0915
(1.00)
0.453
(1.00)
0.158
(1.00)
IFT46 7 (8%) 84 0.473
(1.00)
0.421
(1.00)
0.651
(1.00)
0.00625
(1.00)
0.0747
(1.00)
0.284
(1.00)
0.261
(1.00)
0.758
(1.00)
SRGAP3 6 (7%) 85 0.306
(1.00)
0.877
(1.00)
0.0312
(1.00)
0.0273
(1.00)
0.688
(1.00)
0.74
(1.00)
0.307
(1.00)
0.862
(1.00)
TEX15 9 (10%) 82 0.3
(1.00)
0.213
(1.00)
0.66
(1.00)
0.00626
(1.00)
0.12
(1.00)
0.304
(1.00)
0.0545
(1.00)
0.318
(1.00)
OR7C2 3 (3%) 88 0.798
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.749
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
LMTK2 6 (7%) 85 0.259
(1.00)
1
(1.00)
0.219
(1.00)
0.095
(1.00)
0.189
(1.00)
0.406
(1.00)
1
(1.00)
0.662
(1.00)
MED23 5 (5%) 86 0.423
(1.00)
0.254
(1.00)
0.848
(1.00)
0.0141
(1.00)
0.147
(1.00)
0.501
(1.00)
0.509
(1.00)
0.433
(1.00)
ITPR2 8 (9%) 83 1
(1.00)
0.233
(1.00)
0.106
(1.00)
0.138
(1.00)
0.663
(1.00)
0.176
(1.00)
0.565
(1.00)
0.353
(1.00)
CCNK 4 (4%) 87 0.805
(1.00)
1
(1.00)
0.0412
(1.00)
0.0263
(1.00)
0.213
(1.00)
0.668
(1.00)
0.107
(1.00)
0.813
(1.00)
SLC39A4 5 (5%) 86 0.224
(1.00)
0.622
(1.00)
0.5
(1.00)
0.065
(1.00)
0.388
(1.00)
0.715
(1.00)
0.247
(1.00)
0.603
(1.00)
TEAD4 4 (4%) 87 0.555
(1.00)
0.827
(1.00)
0.68
(1.00)
0.0263
(1.00)
0.742
(1.00)
0.037
(1.00)
0.0256
(1.00)
0.2
(1.00)
TDRD10 3 (3%) 88 0.605
(1.00)
0.483
(1.00)
0.596
(1.00)
1
(1.00)
0.573
(1.00)
0.41
(1.00)
0.453
(1.00)
0.158
(1.00)
TTF1 3 (3%) 88 0.201
(1.00)
0.184
(1.00)
0.795
(1.00)
0.00488
(1.00)
0.0939
(1.00)
0.217
(1.00)
0.0911
(1.00)
0.228
(1.00)
RAB11FIP1 6 (7%) 85 0.356
(1.00)
0.76
(1.00)
0.181
(1.00)
0.048
(1.00)
0.888
(1.00)
0.858
(1.00)
0.865
(1.00)
0.862
(1.00)
HABP4 5 (5%) 86 0.593
(1.00)
1
(1.00)
0.5
(1.00)
0.0229
(1.00)
0.927
(1.00)
0.715
(1.00)
0.71
(1.00)
1
(1.00)
ATXN1 5 (5%) 86 1
(1.00)
0.849
(1.00)
1
(1.00)
0.065
(1.00)
0.73
(1.00)
1
(1.00)
1
(1.00)
0.708
(1.00)
PCDHA9 8 (9%) 83 0.377
(1.00)
0.0552
(1.00)
0.678
(1.00)
0.0426
(1.00)
1
(1.00)
0.519
(1.00)
0.885
(1.00)
0.313
(1.00)
GSN 6 (7%) 85 0.632
(1.00)
0.275
(1.00)
0.299
(1.00)
0.048
(1.00)
0.258
(1.00)
0.482
(1.00)
0.656
(1.00)
0.473
(1.00)
AEBP1 5 (5%) 86 0.423
(1.00)
0.119
(1.00)
1
(1.00)
0.065
(1.00)
0.0335
(1.00)
1
(1.00)
0.509
(1.00)
0.507
(1.00)
THBS1 3 (3%) 88 1
(1.00)
0.266
(1.00)
0.596
(1.00)
0.0357
(1.00)
0.498
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
UNC50 4 (4%) 87 0.448
(1.00)
0.0615
(1.00)
0.138
(1.00)
0.0138
(1.00)
0.457
(1.00)
0.526
(1.00)
0.353
(1.00)
0.554
(1.00)
CPXM2 4 (4%) 87 0.117
(1.00)
0.827
(1.00)
0.808
(1.00)
1
(1.00)
0.457
(1.00)
0.829
(1.00)
0.353
(1.00)
0.554
(1.00)
KCND3 4 (4%) 87 1
(1.00)
0.827
(1.00)
0.441
(1.00)
0.0639
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
GRM1 10 (11%) 81 0.377
(1.00)
0.764
(1.00)
0.458
(1.00)
0.0186
(1.00)
0.373
(1.00)
0.227
(1.00)
0.19
(1.00)
0.515
(1.00)
MRPL48 3 (3%) 88 0.605
(1.00)
0.483
(1.00)
0.795
(1.00)
0.00488
(1.00)
0.0252
(1.00)
0.139
(1.00)
0.012
(1.00)
0.0409
(1.00)
EIF4H 3 (3%) 88 1
(1.00)
0.0172
(1.00)
0.596
(1.00)
0.0357
(1.00)
1
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
ZFHX3 17 (19%) 74 0.605
(1.00)
0.107
(1.00)
0.248
(1.00)
0.115
(1.00)
0.589
(1.00)
0.186
(1.00)
0.492
(1.00)
0.311
(1.00)
VEZF1 5 (5%) 86 0.593
(1.00)
0.849
(1.00)
1
(1.00)
0.0428
(1.00)
0.192
(1.00)
1
(1.00)
0.71
(1.00)
1
(1.00)
CCDC151 5 (5%) 86 0.352
(1.00)
0.119
(1.00)
0.848
(1.00)
0.065
(1.00)
0.176
(1.00)
0.598
(1.00)
0.71
(1.00)
0.365
(1.00)
CR2 7 (8%) 84 0.591
(1.00)
0.888
(1.00)
0.755
(1.00)
0.095
(1.00)
0.734
(1.00)
0.858
(1.00)
0.758
(1.00)
0.758
(1.00)
YBX2 3 (3%) 88 0.428
(1.00)
0.483
(1.00)
0.211
(1.00)
0.00488
(1.00)
0.164
(1.00)
0.217
(1.00)
0.0911
(1.00)
0.228
(1.00)
CCDC63 3 (3%) 88 0.428
(1.00)
0.483
(1.00)
0.795
(1.00)
0.00488
(1.00)
0.0939
(1.00)
0.217
(1.00)
0.0911
(1.00)
0.228
(1.00)
GPR113 6 (7%) 85 0.473
(1.00)
0.304
(1.00)
0.0103
(1.00)
0.0141
(1.00)
0.0749
(1.00)
0.0989
(1.00)
0.0224
(1.00)
0.141
(1.00)
EPHX1 4 (4%) 87 0.805
(1.00)
1
(1.00)
0.255
(1.00)
0.0263
(1.00)
0.816
(1.00)
0.315
(1.00)
0.811
(1.00)
0.436
(1.00)
ZACN 3 (3%) 88 0.798
(1.00)
0.621
(1.00)
0.211
(1.00)
1
(1.00)
0.573
(1.00)
0.41
(1.00)
0.453
(1.00)
0.596
(1.00)
ZNF878 5 (5%) 86 0.224
(1.00)
0.622
(1.00)
1
(1.00)
0.065
(1.00)
0.793
(1.00)
1
(1.00)
0.71
(1.00)
1
(1.00)
KLC3 3 (3%) 88 0.428
(1.00)
0.266
(1.00)
0.0102
(1.00)
0.0829
(1.00)
0.0379
(1.00)
0.00588
(1.00)
0.0393
(1.00)
0.0102
(1.00)
PPIG 3 (3%) 88 0.428
(1.00)
1
(1.00)
PSMB4 4 (4%) 87 0.671
(1.00)
1
(1.00)
1
(1.00)
0.645
(1.00)
0.561
(1.00)
1
(1.00)
1
(1.00)
0.554
(1.00)
AFAP1L2 8 (9%) 83 0.491
(1.00)
0.809
(1.00)
0.182
(1.00)
0.0429
(1.00)
0.637
(1.00)
0.441
(1.00)
0.353
(1.00)
0.631
(1.00)
RBBP8 8 (9%) 83 0.122
(1.00)
1
(1.00)
1
(1.00)
0.0646
(1.00)
0.539
(1.00)
1
(1.00)
1
(1.00)
0.78
(1.00)
MAMLD1 8 (9%) 83 0.797
(1.00)
0.162
(1.00)
0.712
(1.00)
0.027
(1.00)
0.811
(1.00)
0.489
(1.00)
0.451
(1.00)
0.309
(1.00)
FOXN2 3 (3%) 88 0.798
(1.00)
0.621
(1.00)
0.596
(1.00)
1
(1.00)
0.498
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
PRF1 6 (7%) 85 0.212
(1.00)
0.657
(1.00)
1
(1.00)
0.0263
(1.00)
0.213
(1.00)
0.668
(1.00)
0.107
(1.00)
0.104
(1.00)
KIAA0100 8 (9%) 83 0.889
(1.00)
0.0925
(1.00)
0.348
(1.00)
0.138
(1.00)
0.327
(1.00)
0.546
(1.00)
0.127
(1.00)
0.447
(1.00)
MYO9B 8 (9%) 83 0.558
(1.00)
1
(1.00)
0.712
(1.00)
0.138
(1.00)
0.811
(1.00)
1
(1.00)
1
(1.00)
0.802
(1.00)
GABRD 5 (5%) 86 0.176
(1.00)
0.849
(1.00)
0.596
(1.00)
0.065
(1.00)
0.793
(1.00)
0.201
(1.00)
0.111
(1.00)
0.365
(1.00)
SLC4A5 9 (10%) 82 0.194
(1.00)
0.614
(1.00)
0.251
(1.00)
0.0703
(1.00)
0.581
(1.00)
0.728
(1.00)
1
(1.00)
0.742
(1.00)
XYLT2 4 (4%) 87 0.176
(1.00)
0.369
(1.00)
0.559
(1.00)
0.00233
(1.00)
0.0655
(1.00)
0.137
(1.00)
0.0256
(1.00)
0.0726
(1.00)
RIT1 3 (3%) 88 1
(1.00)
1
(1.00)
0.795
(1.00)
1
(1.00)
1
(1.00)
0.783
(1.00)
1
(1.00)
1
(1.00)
HSP90AA1 6 (7%) 85 0.868
(1.00)
0.435
(1.00)
1
(1.00)
0.095
(1.00)
0.229
(1.00)
0.858
(1.00)
0.358
(1.00)
0.758
(1.00)
STK10 5 (5%) 86 0.284
(1.00)
0.147
(1.00)
0.245
(1.00)
0.065
(1.00)
0.482
(1.00)
0.839
(1.00)
0.852
(1.00)
0.848
(1.00)
MTMR3 5 (5%) 86 0.707
(1.00)
0.849
(1.00)
0.704
(1.00)
0.667
(1.00)
0.209
(1.00)
0.839
(1.00)
0.433
(1.00)
0.848
(1.00)
CD3EAP 3 (3%) 88 0.0715
(1.00)
0.0172
(1.00)
1
(1.00)
0.315
(1.00)
0.212
(1.00)
1
(1.00)
0.324
(1.00)
0.795
(1.00)
CSF1R 4 (4%) 87 0.671
(1.00)
0.0892
(1.00)
0.255
(1.00)
0.0639
(1.00)
0.29
(1.00)
1
(1.00)
0.811
(1.00)
1
(1.00)
PARVB 3 (3%) 88 0.307
(1.00)
RASSF2 4 (4%) 87 1
(1.00)
0.674
(1.00)
0.343
(1.00)
0.185
(1.00)
0.742
(1.00)
0.668
(1.00)
0.45
(1.00)
0.813
(1.00)
SV2A 4 (4%) 87 0.555
(1.00)
1
(1.00)
1
(1.00)
0.645
(1.00)
0.561
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
GNAS 10 (11%) 81 0.909
(1.00)
0.694
(1.00)
0.25
(1.00)
0.0872
(1.00)
0.569
(1.00)
0.68
(1.00)
0.688
(1.00)
0.125
(1.00)
HMMR 6 (7%) 85 0.473
(1.00)
0.877
(1.00)
0.651
(1.00)
0.0273
(1.00)
0.888
(1.00)
0.284
(1.00)
0.561
(1.00)
0.862
(1.00)
MBD6 4 (4%) 87 1
(1.00)
0.674
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
NDUFAF2 4 (4%) 87 0.176
(1.00)
1
(1.00)
0.255
(1.00)
0.645
(1.00)
0.04
(1.00)
0.315
(1.00)
0.196
(1.00)
0.0437
(1.00)
STAM 4 (4%) 87 0.805
(1.00)
1
(1.00)
1
(1.00)
0.0263
(1.00)
0.323
(1.00)
0.668
(1.00)
0.45
(1.00)
0.813
(1.00)
KIAA1407 5 (5%) 86 0.103
(1.00)
0.622
(1.00)
0.596
(1.00)
0.0229
(1.00)
0.0384
(1.00)
0.201
(1.00)
0.111
(1.00)
0.087
(1.00)
PCDH15 10 (11%) 81 0.337
(1.00)
0.37
(1.00)
0.0212
(1.00)
0.0472
(1.00)
0.292
(1.00)
0.241
(1.00)
0.0708
(1.00)
0.106
(1.00)
SEC24D 5 (5%) 86 1
(1.00)
0.733
(1.00)
0.301
(1.00)
1
(1.00)
0.419
(1.00)
0.501
(1.00)
1
(1.00)
0.433
(1.00)
SH3BP1 4 (4%) 87 0.671
(1.00)
0.369
(1.00)
0.0412
(1.00)
0.00233
(1.00)
0.0525
(1.00)
0.00994
(1.00)
0.075
(1.00)
0.0247
(1.00)
ZFP36L2 3 (3%) 88 1
(1.00)
0.266
(1.00)
0.596
(1.00)
0.0357
(1.00)
0.498
(1.00)
0.591
(1.00)
1
(1.00)
0.456
(1.00)
IKZF2 3 (3%) 88 0.798
(1.00)
0.184
(1.00)
0.314
(1.00)
0.0188
(1.00)
0.749
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
RARRES3 4 (4%) 87 0.671
(1.00)
0.674
(1.00)
1
(1.00)
0.0263
(1.00)
0.323
(1.00)
0.668
(1.00)
0.45
(1.00)
0.813
(1.00)
MESDC2 4 (4%) 87 0.555
(1.00)
1
(1.00)
1
(1.00)
0.645
(1.00)
1
(1.00)
0.829
(1.00)
1
(1.00)
0.682
(1.00)
ST3GAL5 3 (3%) 88 0.605
(1.00)
1
(1.00)
1
(1.00)
0.0357
(1.00)
0.426
(1.00)
0.591
(1.00)
0.601
(1.00)
0.456
(1.00)
CRIPAK 3 (3%) 88 1
(1.00)
0.778
(1.00)
1
(1.00)
0.315
(1.00)
0.573
(1.00)
1
(1.00)
0.601
(1.00)
0.795
(1.00)
LILRB5 7 (8%) 84 0.143
(1.00)
0.103
(1.00)
0.885
(1.00)
0.0646
(1.00)
0.467
(1.00)
0.672
(1.00)
0.602
(1.00)
0.676
(1.00)
KIAA1967 4 (4%) 87 1
(1.00)
0.674
(1.00)
0.255
(1.00)
0.0639
(1.00)
0.0948
(1.00)
1
(1.00)
0.811
(1.00)
1
(1.00)
UTY 3 (3%) 88 0.201
(1.00)
0.266
(1.00)
0.211
(1.00)
0.569
(1.00)
0.0379
(1.00)
0.0915
(1.00)
0.0393
(1.00)
0.158
(1.00)
REC8 4 (4%) 87 0.176
(1.00)
0.243
(1.00)
0.343
(1.00)
0.00233
(1.00)
0.0246
(1.00)
0.137
(1.00)
0.0256
(1.00)
0.0726
(1.00)
PIH1D2 3 (3%) 88 0.428
(1.00)
0.266
(1.00)
0.211
(1.00)
0.00488
(1.00)
0.311
(1.00)
0.217
(1.00)
0.159
(1.00)
0.228
(1.00)
BRAF 3 (3%) 88 1
(1.00)
0.184
(1.00)
0.596
(1.00)
1
(1.00)
0.857
(1.00)
0.41
(1.00)
0.793
(1.00)
0.596
(1.00)
WDR90 5 (5%) 86 0.423
(1.00)
0.254
(1.00)
0.848
(1.00)
0.0428
(1.00)
0.0834
(1.00)
0.201
(1.00)
0.0127
(1.00)
0.087
(1.00)
'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
ATRX MUTATED 1 6 0
ATRX WILD-TYPE 23 39 21
'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
ATRX MUTATED 0 6 1
ATRX WILD-TYPE 31 29 23

Figure S1.  Get High-res Image Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
ATRX MUTATED 1 3 3
ATRX WILD-TYPE 39 22 16
'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
ATRX MUTATED 0 5 2
ATRX WILD-TYPE 1 26 50
'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
ATRX MUTATED 1 3 1 2
ATRX WILD-TYPE 30 17 10 20
'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
ATRX MUTATED 1 2 4
ATRX WILD-TYPE 36 14 27
'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
ATRX MUTATED 2 3 2
ATRX WILD-TYPE 36 17 24
'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
ATRX MUTATED 4 2 1
ATRX WILD-TYPE 23 17 37
'GRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S9.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
GRIN1 MUTATED 3 4 0
GRIN1 WILD-TYPE 21 41 21
'GRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S10.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
GRIN1 MUTATED 1 2 4
GRIN1 WILD-TYPE 30 33 20
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
GRIN1 MUTATED 3 0 4
GRIN1 WILD-TYPE 37 25 15

Figure S2.  Get High-res Image Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
GRIN1 MUTATED 1 3 3
GRIN1 WILD-TYPE 0 28 49
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
GRIN1 MUTATED 2 2 1 2
GRIN1 WILD-TYPE 29 18 10 20
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
GRIN1 MUTATED 3 2 2
GRIN1 WILD-TYPE 34 14 29
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
GRIN1 MUTATED 2 2 3
GRIN1 WILD-TYPE 36 18 23
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
GRIN1 MUTATED 2 2 3
GRIN1 WILD-TYPE 25 17 35
'DHX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S17.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
DHX9 MUTATED 1 4 3
DHX9 WILD-TYPE 23 41 18
'DHX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S18.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
DHX9 MUTATED 1 4 4
DHX9 WILD-TYPE 30 31 20
'DHX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S19.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
DHX9 MUTATED 4 2 3
DHX9 WILD-TYPE 36 23 16
'DHX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S20.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
DHX9 MUTATED 1 4 4
DHX9 WILD-TYPE 0 27 48
'DHX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
DHX9 MUTATED 1 3 3 2
DHX9 WILD-TYPE 30 17 8 20
'DHX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
DHX9 MUTATED 3 2 4
DHX9 WILD-TYPE 34 14 27
'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
DHX9 MUTATED 3 2 4
DHX9 WILD-TYPE 35 18 22
'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'DHX9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
DHX9 MUTATED 4 2 3
DHX9 WILD-TYPE 23 17 35
'HIBCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S25.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
HIBCH MUTATED 1 5 2
HIBCH WILD-TYPE 23 40 19
'HIBCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S26.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
HIBCH MUTATED 2 5 1
HIBCH WILD-TYPE 29 30 23
'HIBCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S27.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
HIBCH MUTATED 4 2 2
HIBCH WILD-TYPE 36 23 17
'HIBCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
HIBCH MUTATED 0 3 5
HIBCH WILD-TYPE 1 28 47
'HIBCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S29.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
HIBCH MUTATED 2 1 0 5
HIBCH WILD-TYPE 29 19 11 17
'HIBCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S30.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
HIBCH MUTATED 4 2 2
HIBCH WILD-TYPE 33 14 29
'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
HIBCH MUTATED 4 2 2
HIBCH WILD-TYPE 34 18 24
'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'HIBCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
HIBCH MUTATED 2 2 4
HIBCH WILD-TYPE 25 17 34
'AFTPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S33.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
AFTPH MUTATED 5 8 1
AFTPH WILD-TYPE 19 37 20
'AFTPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S34.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
AFTPH MUTATED 4 5 5
AFTPH WILD-TYPE 27 30 19
'AFTPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S35.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
AFTPH MUTATED 5 5 4
AFTPH WILD-TYPE 35 20 15
'AFTPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S36.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
AFTPH MUTATED 1 6 7
AFTPH WILD-TYPE 0 25 45
'AFTPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 1

Table S37.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
AFTPH MUTATED 5 3 5 1
AFTPH WILD-TYPE 26 17 6 21

Figure S3.  Get High-res Image Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'AFTPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S38.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
AFTPH MUTATED 4 3 7
AFTPH WILD-TYPE 33 13 24
'AFTPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
AFTPH MUTATED 5 4 5
AFTPH WILD-TYPE 33 16 21
'AFTPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'AFTPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
AFTPH MUTATED 5 3 6
AFTPH WILD-TYPE 22 16 32
'APP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 1

Table S41.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
APP MUTATED 0 8 1
APP WILD-TYPE 24 37 20

Figure S4.  Get High-res Image Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'APP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S42.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
APP MUTATED 3 5 2
APP WILD-TYPE 28 30 22
'APP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S43.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
APP MUTATED 4 2 3
APP WILD-TYPE 36 23 16
'APP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S44.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
APP MUTATED 1 5 3
APP WILD-TYPE 0 26 49

Figure S5.  Get High-res Image Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'APP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S45.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
APP MUTATED 1 4 1 3
APP WILD-TYPE 30 16 10 19
'APP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S46.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
APP MUTATED 3 2 4
APP WILD-TYPE 34 14 27
'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S47.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
APP MUTATED 2 3 4
APP WILD-TYPE 36 17 22
'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S48.  Gene #6: 'APP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
APP MUTATED 4 3 2
APP WILD-TYPE 23 16 36
'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S49.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
TMC4 MUTATED 5 10 4
TMC4 WILD-TYPE 19 35 17
'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S50.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
TMC4 MUTATED 9 6 4
TMC4 WILD-TYPE 22 29 20
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S51.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
TMC4 MUTATED 10 6 2
TMC4 WILD-TYPE 30 19 17
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S52.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
TMC4 MUTATED 1 5 12
TMC4 WILD-TYPE 0 26 40
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S53.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
TMC4 MUTATED 6 4 2 6
TMC4 WILD-TYPE 25 16 9 16
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S54.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
TMC4 MUTATED 7 1 10
TMC4 WILD-TYPE 30 15 21
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S55.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
TMC4 MUTATED 8 5 5
TMC4 WILD-TYPE 30 15 21
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
TMC4 MUTATED 8 2 8
TMC4 WILD-TYPE 19 17 30
'KIAA0020 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S57.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
KIAA0020 MUTATED 0 3 2
KIAA0020 WILD-TYPE 24 42 19
'KIAA0020 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S58.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
KIAA0020 MUTATED 1 2 2
KIAA0020 WILD-TYPE 30 33 22
'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S59.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
KIAA0020 MUTATED 2 1 2
KIAA0020 WILD-TYPE 38 24 17
'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S60.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
KIAA0020 MUTATED 0 3 2
KIAA0020 WILD-TYPE 1 28 50
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S61.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
KIAA0020 MUTATED 1 2 0 2
KIAA0020 WILD-TYPE 30 18 11 20
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S62.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
KIAA0020 MUTATED 2 1 2
KIAA0020 WILD-TYPE 35 15 29
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S63.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
KIAA0020 MUTATED 2 2 1
KIAA0020 WILD-TYPE 36 18 25
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
KIAA0020 MUTATED 2 1 2
KIAA0020 WILD-TYPE 25 18 36
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 1

Table S65.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
BRDT MUTATED 1 14 1
BRDT WILD-TYPE 23 31 20

Figure S6.  Get High-res Image Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 1

Table S66.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
BRDT MUTATED 2 12 3
BRDT WILD-TYPE 29 23 21

Figure S7.  Get High-res Image Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 1

Table S67.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
BRDT MUTATED 5 5 7
BRDT WILD-TYPE 35 20 12
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 1

Table S68.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
BRDT MUTATED 1 10 6
BRDT WILD-TYPE 0 21 46

Figure S8.  Get High-res Image Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S69.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
BRDT MUTATED 2 6 3 6
BRDT WILD-TYPE 29 14 8 16
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S70.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
BRDT MUTATED 4 4 9
BRDT WILD-TYPE 33 12 22
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S71.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
BRDT MUTATED 5 6 6
BRDT WILD-TYPE 33 14 20
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S72.  Gene #9: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
BRDT MUTATED 8 4 5
BRDT WILD-TYPE 19 15 33
'SETD1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S73.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SETD1A MUTATED 5 9 3
SETD1A WILD-TYPE 19 36 18
'SETD1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S74.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SETD1A MUTATED 7 6 4
SETD1A WILD-TYPE 24 29 20
'SETD1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SETD1A MUTATED 8 4 5
SETD1A WILD-TYPE 32 21 14
'SETD1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S76.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SETD1A MUTATED 0 9 8
SETD1A WILD-TYPE 1 22 44
'SETD1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S77.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SETD1A MUTATED 7 5 2 3
SETD1A WILD-TYPE 24 15 9 19
'SETD1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S78.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
SETD1A MUTATED 7 5 5
SETD1A WILD-TYPE 30 11 26
'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S79.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
SETD1A MUTATED 8 3 6
SETD1A WILD-TYPE 30 17 20
'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S80.  Gene #10: 'SETD1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
SETD1A MUTATED 5 5 7
SETD1A WILD-TYPE 22 14 31
'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S81.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SEH1L MUTATED 2 12 2
SEH1L WILD-TYPE 22 33 19
'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S82.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SEH1L MUTATED 3 11 3
SEH1L WILD-TYPE 28 24 21
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 1

Table S83.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SEH1L MUTATED 4 6 7
SEH1L WILD-TYPE 36 19 12

Figure S9.  Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 1

Table S84.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SEH1L MUTATED 1 10 6
SEH1L WILD-TYPE 0 21 46

Figure S10.  Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 1

Table S85.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SEH1L MUTATED 1 6 5 5
SEH1L WILD-TYPE 30 14 6 17

Figure S11.  Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 1

Table S86.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
SEH1L MUTATED 4 6 7
SEH1L WILD-TYPE 33 10 24
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S87.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
SEH1L MUTATED 3 7 7
SEH1L WILD-TYPE 35 13 19

Figure S12.  Get High-res Image Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 1

Table S88.  Gene #11: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
SEH1L MUTATED 7 6 4
SEH1L WILD-TYPE 20 13 34
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S89.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
IRS1 MUTATED 5 6 3
IRS1 WILD-TYPE 19 39 18
'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S90.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
IRS1 MUTATED 6 6 3
IRS1 WILD-TYPE 25 29 21
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S91.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
IRS1 MUTATED 7 5 3
IRS1 WILD-TYPE 33 20 16
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S92.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
IRS1 MUTATED 0 6 9
IRS1 WILD-TYPE 1 25 43
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S93.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
IRS1 MUTATED 6 5 1 3
IRS1 WILD-TYPE 25 15 10 19
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S94.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
IRS1 MUTATED 6 3 6
IRS1 WILD-TYPE 31 13 25
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S95.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
IRS1 MUTATED 6 4 5
IRS1 WILD-TYPE 32 16 21
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S96.  Gene #12: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
IRS1 MUTATED 5 3 7
IRS1 WILD-TYPE 22 16 31
'PLAUR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S97.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
PLAUR MUTATED 1 5 0
PLAUR WILD-TYPE 23 40 21
'PLAUR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S98.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
PLAUR MUTATED 2 3 1
PLAUR WILD-TYPE 29 32 23
'PLAUR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S99.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
PLAUR MUTATED 2 2 1
PLAUR WILD-TYPE 38 23 18
'PLAUR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S100.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
PLAUR MUTATED 0 2 3
PLAUR WILD-TYPE 1 29 49
'PLAUR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S101.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
PLAUR MUTATED 2 1 1 1
PLAUR WILD-TYPE 29 19 10 21
'PLAUR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S102.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
PLAUR MUTATED 1 1 3
PLAUR WILD-TYPE 36 15 28
'PLAUR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
PLAUR MUTATED 2 1 2
PLAUR WILD-TYPE 36 19 24
'PLAUR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104.  Gene #13: 'PLAUR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
PLAUR MUTATED 2 1 2
PLAUR WILD-TYPE 25 18 36
'TERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00978 (Fisher's exact test), Q value = 1

Table S105.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
TERF1 MUTATED 4 0 1
TERF1 WILD-TYPE 20 45 20

Figure S13.  Get High-res Image Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 1

Table S106.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
TERF1 MUTATED 5 1 0
TERF1 WILD-TYPE 26 34 24

Figure S14.  Get High-res Image Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S107.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
TERF1 MUTATED 3 2 1
TERF1 WILD-TYPE 37 23 18
'TERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S108.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
TERF1 MUTATED 0 1 5
TERF1 WILD-TYPE 1 30 47
'TERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S109.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
TERF1 MUTATED 4 1 0 1
TERF1 WILD-TYPE 27 19 11 21
'TERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S110.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
TERF1 MUTATED 4 0 2
TERF1 WILD-TYPE 33 16 29
'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S111.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
TERF1 MUTATED 4 1 1
TERF1 WILD-TYPE 34 19 25
'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S112.  Gene #14: 'TERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
TERF1 MUTATED 2 0 4
TERF1 WILD-TYPE 25 19 34
'PDILT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S113.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
PDILT MUTATED 1 7 3
PDILT WILD-TYPE 23 38 18
'PDILT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S114.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
PDILT MUTATED 4 4 3
PDILT WILD-TYPE 27 31 21
'PDILT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
PDILT MUTATED 6 2 3
PDILT WILD-TYPE 34 23 16
'PDILT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S116.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
PDILT MUTATED 1 5 5
PDILT WILD-TYPE 0 26 47
'PDILT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S117.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
PDILT MUTATED 3 3 2 3
PDILT WILD-TYPE 28 17 9 19
'PDILT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S118.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
PDILT MUTATED 5 3 3
PDILT WILD-TYPE 32 13 28
'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S119.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
PDILT MUTATED 5 2 4
PDILT WILD-TYPE 33 18 22
'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S120.  Gene #15: 'PDILT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
PDILT MUTATED 3 3 5
PDILT WILD-TYPE 24 16 33
'CUX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S121.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
CUX2 MUTATED 5 5 1
CUX2 WILD-TYPE 19 40 20
'CUX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S122.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
CUX2 MUTATED 5 4 2
CUX2 WILD-TYPE 26 31 22
'CUX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S123.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
CUX2 MUTATED 6 2 3
CUX2 WILD-TYPE 34 23 16
'CUX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S124.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
CUX2 MUTATED 1 3 7
CUX2 WILD-TYPE 0 28 45
'CUX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S125.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
CUX2 MUTATED 4 2 1 4
CUX2 WILD-TYPE 27 18 10 18
'CUX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S126.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
CUX2 MUTATED 6 2 3
CUX2 WILD-TYPE 31 14 28
'CUX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S127.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
CUX2 MUTATED 5 3 3
CUX2 WILD-TYPE 33 17 23
'CUX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S128.  Gene #16: 'CUX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
CUX2 MUTATED 3 2 6
CUX2 WILD-TYPE 24 17 32
'KRT73 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S129.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
KRT73 MUTATED 3 4 2
KRT73 WILD-TYPE 21 41 19
'KRT73 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S130.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
KRT73 MUTATED 3 3 4
KRT73 WILD-TYPE 28 32 20
'KRT73 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S131.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
KRT73 MUTATED 6 2 2
KRT73 WILD-TYPE 34 23 17
'KRT73 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S132.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
KRT73 MUTATED 1 3 6
KRT73 WILD-TYPE 0 28 46
'KRT73 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S133.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
KRT73 MUTATED 5 2 2 1
KRT73 WILD-TYPE 26 18 9 21
'KRT73 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S134.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
KRT73 MUTATED 4 1 5
KRT73 WILD-TYPE 33 15 26
'KRT73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S135.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
KRT73 MUTATED 5 2 3
KRT73 WILD-TYPE 33 18 23
'KRT73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S136.  Gene #17: 'KRT73 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
KRT73 MUTATED 3 2 5
KRT73 WILD-TYPE 24 17 33
'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S137.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
TAOK2 MUTATED 4 12 4
TAOK2 WILD-TYPE 20 33 17
'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S138.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
TAOK2 MUTATED 8 9 3
TAOK2 WILD-TYPE 23 26 21
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S139.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
TAOK2 MUTATED 10 3 7
TAOK2 WILD-TYPE 30 22 12
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S140.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
TAOK2 MUTATED 1 9 10
TAOK2 WILD-TYPE 0 22 42
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S141.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
TAOK2 MUTATED 6 5 5 4
TAOK2 WILD-TYPE 25 15 6 18
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S142.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
TAOK2 MUTATED 8 5 7
TAOK2 WILD-TYPE 29 11 24
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S143.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
TAOK2 MUTATED 7 4 9
TAOK2 WILD-TYPE 31 16 17
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S144.  Gene #18: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
TAOK2 MUTATED 6 4 10
TAOK2 WILD-TYPE 21 15 28
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S145.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SORBS2 MUTATED 2 12 3
SORBS2 WILD-TYPE 22 33 18
'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S146.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SORBS2 MUTATED 5 7 5
SORBS2 WILD-TYPE 26 28 19
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S147.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SORBS2 MUTATED 10 2 4
SORBS2 WILD-TYPE 30 23 15
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S148.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SORBS2 MUTATED 1 5 10
SORBS2 WILD-TYPE 0 26 42
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S149.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SORBS2 MUTATED 5 3 2 6
SORBS2 WILD-TYPE 26 17 9 16
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S150.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
SORBS2 MUTATED 7 4 5
SORBS2 WILD-TYPE 30 12 26
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S151.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
SORBS2 MUTATED 7 3 6
SORBS2 WILD-TYPE 31 17 20
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S152.  Gene #19: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
SORBS2 MUTATED 3 6 7
SORBS2 WILD-TYPE 24 13 31
'ATG16L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S153.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
ATG16L2 MUTATED 0 4 1
ATG16L2 WILD-TYPE 24 41 20
'ATG16L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S154.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
ATG16L2 MUTATED 0 3 2
ATG16L2 WILD-TYPE 31 32 22
'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
ATG16L2 MUTATED 1 1 3
ATG16L2 WILD-TYPE 39 24 16
'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S156.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
ATG16L2 MUTATED 0 4 1
ATG16L2 WILD-TYPE 1 27 51
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S157.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
ATG16L2 MUTATED 1 1 2 1
ATG16L2 WILD-TYPE 30 19 9 21
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S158.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
ATG16L2 MUTATED 1 3 1
ATG16L2 WILD-TYPE 36 13 30
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S159.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
ATG16L2 MUTATED 1 1 3
ATG16L2 WILD-TYPE 37 19 23
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S160.  Gene #20: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
ATG16L2 MUTATED 1 3 1
ATG16L2 WILD-TYPE 26 16 37
'PTCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S161.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
PTCD1 MUTATED 3 3 1
PTCD1 WILD-TYPE 21 42 20
'PTCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S162.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
PTCD1 MUTATED 3 4 1
PTCD1 WILD-TYPE 28 31 23
'PTCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S163.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
PTCD1 MUTATED 3 2 3
PTCD1 WILD-TYPE 37 23 16
'PTCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S164.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
PTCD1 MUTATED 0 4 4
PTCD1 WILD-TYPE 1 27 48
'PTCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S165.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
PTCD1 MUTATED 2 3 1 2
PTCD1 WILD-TYPE 29 17 10 20
'PTCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S166.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
PTCD1 MUTATED 4 0 4
PTCD1 WILD-TYPE 33 16 27
'PTCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S167.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
PTCD1 MUTATED 3 3 2
PTCD1 WILD-TYPE 35 17 24
'PTCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S168.  Gene #21: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
PTCD1 MUTATED 4 0 4
PTCD1 WILD-TYPE 23 19 34
'FAM198B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S169.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
FAM198B MUTATED 3 2 1
FAM198B WILD-TYPE 21 43 20
'FAM198B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S170.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
FAM198B MUTATED 2 0 4
FAM198B WILD-TYPE 29 35 20

Figure S15.  Get High-res Image Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM198B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S171.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
FAM198B MUTATED 4 0 2
FAM198B WILD-TYPE 36 25 17
'FAM198B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S172.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
FAM198B MUTATED 1 1 4
FAM198B WILD-TYPE 0 30 48

Figure S16.  Get High-res Image Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'FAM198B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S173.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
FAM198B MUTATED 3 1 0 2
FAM198B WILD-TYPE 28 19 11 20
'FAM198B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S174.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
FAM198B MUTATED 4 1 1
FAM198B WILD-TYPE 33 15 30
'FAM198B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S175.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
FAM198B MUTATED 3 1 2
FAM198B WILD-TYPE 35 19 24
'FAM198B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S176.  Gene #22: 'FAM198B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
FAM198B MUTATED 1 1 4
FAM198B WILD-TYPE 26 18 34
'NDEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S177.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
NDEL1 MUTATED 1 4 0
NDEL1 WILD-TYPE 23 41 21
'NDEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S178.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
NDEL1 MUTATED 1 3 1
NDEL1 WILD-TYPE 30 32 23
'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000377 (Fisher's exact test), Q value = 1

Table S179.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
NDEL1 MUTATED 0 0 5
NDEL1 WILD-TYPE 40 25 14

Figure S17.  Get High-res Image Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S180.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
NDEL1 MUTATED 0 4 1
NDEL1 WILD-TYPE 1 27 51
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 1

Table S181.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
NDEL1 MUTATED 0 1 2 2
NDEL1 WILD-TYPE 31 19 9 20
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S182.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
NDEL1 MUTATED 1 3 1
NDEL1 WILD-TYPE 36 13 30
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 1

Table S183.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
NDEL1 MUTATED 0 1 4
NDEL1 WILD-TYPE 38 19 22

Figure S18.  Get High-res Image Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S184.  Gene #23: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
NDEL1 MUTATED 1 3 1
NDEL1 WILD-TYPE 26 16 37
'NFIL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S185.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
NFIL3 MUTATED 3 8 0
NFIL3 WILD-TYPE 21 37 21
'NFIL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S186.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
NFIL3 MUTATED 2 6 3
NFIL3 WILD-TYPE 29 29 21
'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S187.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
NFIL3 MUTATED 5 4 2
NFIL3 WILD-TYPE 35 21 17
'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0783 (Fisher's exact test), Q value = 1

Table S188.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
NFIL3 MUTATED 1 5 5
NFIL3 WILD-TYPE 0 26 47
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S189.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
NFIL3 MUTATED 4 4 2 1
NFIL3 WILD-TYPE 27 16 9 21
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S190.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
NFIL3 MUTATED 4 3 4
NFIL3 WILD-TYPE 33 13 27
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S191.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
NFIL3 MUTATED 4 4 3
NFIL3 WILD-TYPE 34 16 23
'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S192.  Gene #24: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
NFIL3 MUTATED 4 2 5
NFIL3 WILD-TYPE 23 17 33
'ATP13A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S193.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
ATP13A3 MUTATED 3 4 4
ATP13A3 WILD-TYPE 21 41 17
'ATP13A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S194.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
ATP13A3 MUTATED 5 4 2
ATP13A3 WILD-TYPE 26 31 22
'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S195.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
ATP13A3 MUTATED 6 2 3
ATP13A3 WILD-TYPE 34 23 16
'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S196.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
ATP13A3 MUTATED 0 3 8
ATP13A3 WILD-TYPE 1 28 44
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S197.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
ATP13A3 MUTATED 4 3 1 3
ATP13A3 WILD-TYPE 27 17 10 19
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0814 (Fisher's exact test), Q value = 1

Table S198.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
ATP13A3 MUTATED 8 0 3
ATP13A3 WILD-TYPE 29 16 28
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S199.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
ATP13A3 MUTATED 6 2 3
ATP13A3 WILD-TYPE 32 18 23
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S200.  Gene #25: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
ATP13A3 MUTATED 3 0 8
ATP13A3 WILD-TYPE 24 19 30
'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S201.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
IPP MUTATED 2 10 4
IPP WILD-TYPE 22 35 17
'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S202.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
IPP MUTATED 3 9 5
IPP WILD-TYPE 28 26 19
'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S203.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
IPP MUTATED 7 3 7
IPP WILD-TYPE 33 22 12
'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 1

Table S204.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
IPP MUTATED 1 9 7
IPP WILD-TYPE 0 22 45

Figure S19.  Get High-res Image Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S205.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
IPP MUTATED 4 3 3 7
IPP WILD-TYPE 27 17 8 15
'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S206.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
IPP MUTATED 6 7 4
IPP WILD-TYPE 31 9 27

Figure S20.  Get High-res Image Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S207.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
IPP MUTATED 7 2 8
IPP WILD-TYPE 31 18 18
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S208.  Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
IPP MUTATED 4 8 5
IPP WILD-TYPE 23 11 33

Figure S21.  Get High-res Image Gene #26: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GAS2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S209.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
GAS2L2 MUTATED 4 12 7
GAS2L2 WILD-TYPE 20 33 14
'GAS2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S210.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
GAS2L2 MUTATED 9 9 5
GAS2L2 WILD-TYPE 22 26 19
'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S211.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
GAS2L2 MUTATED 10 5 6
GAS2L2 WILD-TYPE 30 20 13
'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S212.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
GAS2L2 MUTATED 1 10 10
GAS2L2 WILD-TYPE 0 21 42
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S213.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
GAS2L2 MUTATED 7 5 4 5
GAS2L2 WILD-TYPE 24 15 7 17
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S214.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
GAS2L2 MUTATED 6 5 10
GAS2L2 WILD-TYPE 31 11 21
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S215.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
GAS2L2 MUTATED 9 4 8
GAS2L2 WILD-TYPE 29 16 18
'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S216.  Gene #27: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
GAS2L2 MUTATED 7 6 8
GAS2L2 WILD-TYPE 20 13 30
'XRCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S217.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
XRCC2 MUTATED 2 2 1
XRCC2 WILD-TYPE 22 43 20
'XRCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S218.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
XRCC2 MUTATED 3 1 1
XRCC2 WILD-TYPE 28 34 23
'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S219.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
XRCC2 MUTATED 3 1 1
XRCC2 WILD-TYPE 37 24 18
'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S220.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
XRCC2 MUTATED 0 1 4
XRCC2 WILD-TYPE 1 30 48
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S221.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
XRCC2 MUTATED 3 1 0 1
XRCC2 WILD-TYPE 28 19 11 21
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S222.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
XRCC2 MUTATED 3 0 2
XRCC2 WILD-TYPE 34 16 29
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S223.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
XRCC2 MUTATED 3 2 0
XRCC2 WILD-TYPE 35 18 26
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S224.  Gene #28: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
XRCC2 MUTATED 2 0 3
XRCC2 WILD-TYPE 25 19 35
'ZBTB33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S225.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
ZBTB33 MUTATED 3 2 1
ZBTB33 WILD-TYPE 21 43 20
'ZBTB33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S226.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
ZBTB33 MUTATED 3 2 1
ZBTB33 WILD-TYPE 28 33 23
'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S227.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
ZBTB33 MUTATED 5 1 0
ZBTB33 WILD-TYPE 35 24 19
'ZBTB33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S228.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
ZBTB33 MUTATED 0 1 5
ZBTB33 WILD-TYPE 1 30 47
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S229.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
ZBTB33 MUTATED 4 0 1 1
ZBTB33 WILD-TYPE 27 20 10 21
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S230.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
ZBTB33 MUTATED 5 0 1
ZBTB33 WILD-TYPE 32 16 30
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S231.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
ZBTB33 MUTATED 5 1 0
ZBTB33 WILD-TYPE 33 19 26
'ZBTB33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S232.  Gene #29: 'ZBTB33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
ZBTB33 MUTATED 1 0 5
ZBTB33 WILD-TYPE 26 19 33
'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 1

Table S233.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
PTPRF MUTATED 1 12 4
PTPRF WILD-TYPE 23 33 17
'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S234.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
PTPRF MUTATED 3 10 4
PTPRF WILD-TYPE 28 25 20
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S235.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
PTPRF MUTATED 5 8 4
PTPRF WILD-TYPE 35 17 15
'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 1

Table S236.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
PTPRF MUTATED 1 9 7
PTPRF WILD-TYPE 0 22 45

Figure S22.  Get High-res Image Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S237.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
PTPRF MUTATED 4 7 3 3
PTPRF WILD-TYPE 27 13 8 19
'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S238.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
PTPRF MUTATED 4 2 11
PTPRF WILD-TYPE 33 14 20

Figure S23.  Get High-res Image Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S239.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
PTPRF MUTATED 6 6 5
PTPRF WILD-TYPE 32 14 21
'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00811 (Fisher's exact test), Q value = 1

Table S240.  Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
PTPRF MUTATED 11 2 4
PTPRF WILD-TYPE 16 17 34

Figure S24.  Get High-res Image Gene #30: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S241.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
UBXN6 MUTATED 2 6 1
UBXN6 WILD-TYPE 22 39 20
'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S242.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
UBXN6 MUTATED 1 5 3
UBXN6 WILD-TYPE 30 30 21
'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S243.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
UBXN6 MUTATED 4 2 3
UBXN6 WILD-TYPE 36 23 16
'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S244.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
UBXN6 MUTATED 1 5 3
UBXN6 WILD-TYPE 0 26 49

Figure S25.  Get High-res Image Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S245.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
UBXN6 MUTATED 2 4 2 1
UBXN6 WILD-TYPE 29 16 9 21
'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S246.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
UBXN6 MUTATED 3 1 5
UBXN6 WILD-TYPE 34 15 26
'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S247.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
UBXN6 MUTATED 2 3 4
UBXN6 WILD-TYPE 36 17 22
'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S248.  Gene #31: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
UBXN6 MUTATED 5 1 3
UBXN6 WILD-TYPE 22 18 35
'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S249.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
MEPCE MUTATED 4 12 1
MEPCE WILD-TYPE 20 33 20
'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S250.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
MEPCE MUTATED 4 11 3
MEPCE WILD-TYPE 27 24 21
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S251.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
MEPCE MUTATED 7 5 6
MEPCE WILD-TYPE 33 20 13
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 1

Table S252.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
MEPCE MUTATED 1 9 8
MEPCE WILD-TYPE 0 22 44
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S253.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
MEPCE MUTATED 4 6 4 4
MEPCE WILD-TYPE 27 14 7 18
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S254.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
MEPCE MUTATED 7 3 8
MEPCE WILD-TYPE 30 13 23
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S255.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
MEPCE MUTATED 6 5 7
MEPCE WILD-TYPE 32 15 19
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S256.  Gene #32: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
MEPCE MUTATED 8 4 6
MEPCE WILD-TYPE 19 15 32
'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S257.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
CRAT MUTATED 1 5 0
CRAT WILD-TYPE 23 40 21
'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 1

Table S258.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
CRAT MUTATED 1 5 0
CRAT WILD-TYPE 30 30 24
'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
CRAT MUTATED 1 2 3
CRAT WILD-TYPE 39 23 16
'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 1

Table S260.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
CRAT MUTATED 0 5 1
CRAT WILD-TYPE 1 26 51
'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 1

Table S261.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
CRAT MUTATED 1 1 3 1
CRAT WILD-TYPE 30 19 8 21
'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S262.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
CRAT MUTATED 1 3 2
CRAT WILD-TYPE 36 13 29
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S263.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
CRAT MUTATED 2 0 4
CRAT WILD-TYPE 36 20 22
'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S264.  Gene #33: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
CRAT MUTATED 2 2 2
CRAT WILD-TYPE 25 17 36
'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S265.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
MBD3 MUTATED 3 6 4
MBD3 WILD-TYPE 21 39 17
'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S266.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
MBD3 MUTATED 5 5 3
MBD3 WILD-TYPE 26 30 21
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S267.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
MBD3 MUTATED 6 2 5
MBD3 WILD-TYPE 34 23 14
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S268.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
MBD3 MUTATED 1 6 6
MBD3 WILD-TYPE 0 25 46
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S269.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
MBD3 MUTATED 3 4 2 4
MBD3 WILD-TYPE 28 16 9 18
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S270.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
MBD3 MUTATED 5 4 4
MBD3 WILD-TYPE 32 12 27
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S271.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
MBD3 MUTATED 4 4 5
MBD3 WILD-TYPE 34 16 21
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S272.  Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
MBD3 MUTATED 4 3 6
MBD3 WILD-TYPE 23 16 32
'ZNF644 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S273.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
ZNF644 MUTATED 4 5 0
ZNF644 WILD-TYPE 20 40 21
'ZNF644 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S274.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
ZNF644 MUTATED 3 4 2
ZNF644 WILD-TYPE 28 31 22
'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S275.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
ZNF644 MUTATED 4 3 2
ZNF644 WILD-TYPE 36 22 17
'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 1

Table S276.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
ZNF644 MUTATED 1 5 3
ZNF644 WILD-TYPE 0 26 49

Figure S26.  Get High-res Image Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S277.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
ZNF644 MUTATED 3 5 1 0
ZNF644 WILD-TYPE 28 15 10 22
'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S278.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
ZNF644 MUTATED 3 1 5
ZNF644 WILD-TYPE 34 15 26
'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 1

Table S279.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
ZNF644 MUTATED 3 5 1
ZNF644 WILD-TYPE 35 15 25
'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S280.  Gene #35: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
ZNF644 MUTATED 5 1 3
ZNF644 WILD-TYPE 22 18 35
'NAGPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S281.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
NAGPA MUTATED 3 3 2
NAGPA WILD-TYPE 21 42 19
'NAGPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S282.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
NAGPA MUTATED 3 2 3
NAGPA WILD-TYPE 28 33 21
'NAGPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S283.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
NAGPA MUTATED 6 2 0
NAGPA WILD-TYPE 34 23 19
'NAGPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00419 (Fisher's exact test), Q value = 1

Table S284.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
NAGPA MUTATED 1 0 7
NAGPA WILD-TYPE 0 31 45

Figure S27.  Get High-res Image Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S285.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
NAGPA MUTATED 4 2 0 2
NAGPA WILD-TYPE 27 18 11 20
'NAGPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S286.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
NAGPA MUTATED 5 0 3
NAGPA WILD-TYPE 32 16 28
'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S287.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
NAGPA MUTATED 5 3 0
NAGPA WILD-TYPE 33 17 26
'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S288.  Gene #36: 'NAGPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
NAGPA MUTATED 3 0 5
NAGPA WILD-TYPE 24 19 33
'WWTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S289.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
WWTR1 MUTATED 5 6 1
WWTR1 WILD-TYPE 19 39 20
'WWTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S290.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
WWTR1 MUTATED 5 4 3
WWTR1 WILD-TYPE 26 31 21
'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S291.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
WWTR1 MUTATED 7 2 3
WWTR1 WILD-TYPE 33 23 16
'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S292.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
WWTR1 MUTATED 1 5 6
WWTR1 WILD-TYPE 0 26 46
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S293.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
WWTR1 MUTATED 6 4 1 1
WWTR1 WILD-TYPE 25 16 10 21
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S294.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
WWTR1 MUTATED 6 2 4
WWTR1 WILD-TYPE 31 14 27
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S295.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
WWTR1 MUTATED 6 3 3
WWTR1 WILD-TYPE 32 17 23
'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S296.  Gene #37: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
WWTR1 MUTATED 4 2 6
WWTR1 WILD-TYPE 23 17 32
'B4GALT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S297.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
B4GALT2 MUTATED 4 3 3
B4GALT2 WILD-TYPE 20 42 18
'B4GALT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S298.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
B4GALT2 MUTATED 6 2 2
B4GALT2 WILD-TYPE 25 33 22
'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S299.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
B4GALT2 MUTATED 7 3 0
B4GALT2 WILD-TYPE 33 22 19
'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S300.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
B4GALT2 MUTATED 0 2 8
B4GALT2 WILD-TYPE 1 29 44
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S301.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
B4GALT2 MUTATED 7 2 0 1
B4GALT2 WILD-TYPE 24 18 11 21
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S302.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
B4GALT2 MUTATED 6 1 3
B4GALT2 WILD-TYPE 31 15 28
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S303.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
B4GALT2 MUTATED 7 2 1
B4GALT2 WILD-TYPE 31 18 25
'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S304.  Gene #38: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
B4GALT2 MUTATED 2 1 7
B4GALT2 WILD-TYPE 25 18 31
'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S305.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SGOL2 MUTATED 5 5 1
SGOL2 WILD-TYPE 19 40 20
'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S306.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SGOL2 MUTATED 5 4 2
SGOL2 WILD-TYPE 26 31 22
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S307.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SGOL2 MUTATED 7 3 1
SGOL2 WILD-TYPE 33 22 18
'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S308.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SGOL2 MUTATED 1 3 7
SGOL2 WILD-TYPE 0 28 45
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S309.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SGOL2 MUTATED 6 2 2 1
SGOL2 WILD-TYPE 25 18 9 21
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S310.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
SGOL2 MUTATED 5 0 6
SGOL2 WILD-TYPE 32 16 25
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S311.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
SGOL2 MUTATED 6 4 1
SGOL2 WILD-TYPE 32 16 25
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
SGOL2 MUTATED 4 0 7
SGOL2 WILD-TYPE 23 19 31
'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S313.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
EDC4 MUTATED 4 9 5
EDC4 WILD-TYPE 20 36 16
'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S314.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
EDC4 MUTATED 5 8 5
EDC4 WILD-TYPE 26 27 19
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S315.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
EDC4 MUTATED 9 5 3
EDC4 WILD-TYPE 31 20 16
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S316.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
EDC4 MUTATED 1 6 10
EDC4 WILD-TYPE 0 25 42
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S317.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
EDC4 MUTATED 5 6 2 4
EDC4 WILD-TYPE 26 14 9 18
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S318.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
EDC4 MUTATED 7 3 7
EDC4 WILD-TYPE 30 13 24
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S319.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
EDC4 MUTATED 7 5 5
EDC4 WILD-TYPE 31 15 21
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S320.  Gene #40: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
EDC4 MUTATED 7 4 6
EDC4 WILD-TYPE 20 15 32
'RAB11FIP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S321.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
RAB11FIP5 MUTATED 2 4 2
RAB11FIP5 WILD-TYPE 22 41 19
'RAB11FIP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S322.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
RAB11FIP5 MUTATED 1 4 3
RAB11FIP5 WILD-TYPE 30 31 21
'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S323.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
RAB11FIP5 MUTATED 3 1 4
RAB11FIP5 WILD-TYPE 37 24 15
'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S324.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
RAB11FIP5 MUTATED 0 4 4
RAB11FIP5 WILD-TYPE 1 27 48
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S325.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
RAB11FIP5 MUTATED 2 2 2 2
RAB11FIP5 WILD-TYPE 29 18 9 20
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S326.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
RAB11FIP5 MUTATED 4 2 2
RAB11FIP5 WILD-TYPE 33 14 29
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S327.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
RAB11FIP5 MUTATED 3 2 3
RAB11FIP5 WILD-TYPE 35 18 23
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S328.  Gene #41: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
RAB11FIP5 MUTATED 2 2 4
RAB11FIP5 WILD-TYPE 25 17 34
'DHRS7B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S329.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
DHRS7B MUTATED 1 3 1
DHRS7B WILD-TYPE 23 42 20
'DHRS7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S330.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
DHRS7B MUTATED 2 2 1
DHRS7B WILD-TYPE 29 33 23
'DHRS7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S331.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
DHRS7B MUTATED 3 2 0
DHRS7B WILD-TYPE 37 23 19
'DHRS7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S332.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
DHRS7B MUTATED 0 1 4
DHRS7B WILD-TYPE 1 30 48
'DHRS7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S333.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
DHRS7B MUTATED 2 1 0 2
DHRS7B WILD-TYPE 29 19 11 20
'DHRS7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S334.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
DHRS7B MUTATED 3 0 2
DHRS7B WILD-TYPE 34 16 29
'DHRS7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S335.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
DHRS7B MUTATED 3 1 1
DHRS7B WILD-TYPE 35 19 25
'DHRS7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S336.  Gene #42: 'DHRS7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
DHRS7B MUTATED 2 0 3
DHRS7B WILD-TYPE 25 19 35
'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S337.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
PAK1 MUTATED 2 3 1
PAK1 WILD-TYPE 22 42 20
'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S338.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
PAK1 MUTATED 3 2 2
PAK1 WILD-TYPE 28 33 22
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S339.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
PAK1 MUTATED 4 2 1
PAK1 WILD-TYPE 36 23 18
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S340.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
PAK1 MUTATED 0 3 4
PAK1 WILD-TYPE 1 28 48
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S341.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
PAK1 MUTATED 3 2 1 1
PAK1 WILD-TYPE 28 18 10 21
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S342.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
PAK1 MUTATED 2 1 4
PAK1 WILD-TYPE 35 15 27
'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S343.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
PAK1 MUTATED 4 1 2
PAK1 WILD-TYPE 34 19 24
'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S344.  Gene #43: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
PAK1 MUTATED 2 2 3
PAK1 WILD-TYPE 25 17 35
'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S345.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
FYN MUTATED 1 6 1
FYN WILD-TYPE 23 39 20
'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S346.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
FYN MUTATED 1 4 3
FYN WILD-TYPE 30 31 21
'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S347.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
FYN MUTATED 2 2 4
FYN WILD-TYPE 38 23 15
'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S348.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
FYN MUTATED 0 5 3
FYN WILD-TYPE 1 26 49
'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S349.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
FYN MUTATED 1 2 2 3
FYN WILD-TYPE 30 18 9 19
'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S350.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
FYN MUTATED 2 3 3
FYN WILD-TYPE 35 13 28
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S351.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
FYN MUTATED 2 3 3
FYN WILD-TYPE 36 17 23
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S352.  Gene #44: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
FYN MUTATED 3 3 2
FYN WILD-TYPE 24 16 36
'TMCO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S353.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
TMCO1 MUTATED 2 7 3
TMCO1 WILD-TYPE 22 38 18
'TMCO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S354.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
TMCO1 MUTATED 5 4 3
TMCO1 WILD-TYPE 26 31 21
'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S355.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
TMCO1 MUTATED 7 3 2
TMCO1 WILD-TYPE 33 22 17
'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S356.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
TMCO1 MUTATED 1 4 7
TMCO1 WILD-TYPE 0 27 45
'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 1

Table S357.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
TMCO1 MUTATED 7 3 2 0
TMCO1 WILD-TYPE 24 17 9 22
'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S358.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
TMCO1 MUTATED 5 2 5
TMCO1 WILD-TYPE 32 14 26
'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S359.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
TMCO1 MUTATED 7 3 2
TMCO1 WILD-TYPE 31 17 24
'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S360.  Gene #45: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
TMCO1 MUTATED 4 2 6
TMCO1 WILD-TYPE 23 17 32
'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S361.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
NPNT MUTATED 4 5 1
NPNT WILD-TYPE 20 40 20
'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S362.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
NPNT MUTATED 3 5 2
NPNT WILD-TYPE 28 30 22
'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
NPNT MUTATED 6 0 4
NPNT WILD-TYPE 34 25 15

Figure S28.  Get High-res Image Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S364.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
NPNT MUTATED 0 4 6
NPNT WILD-TYPE 1 27 46
'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S365.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
NPNT MUTATED 5 1 0 4
NPNT WILD-TYPE 26 19 11 18
'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S366.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
NPNT MUTATED 6 3 1
NPNT WILD-TYPE 31 13 30
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S367.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
NPNT MUTATED 5 1 4
NPNT WILD-TYPE 33 19 22
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S368.  Gene #46: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
NPNT MUTATED 1 4 5
NPNT WILD-TYPE 26 15 33
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S369.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
ERF MUTATED 3 9 4
ERF WILD-TYPE 21 36 17
'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S370.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
ERF MUTATED 4 8 4
ERF WILD-TYPE 27 27 20
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S371.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
ERF MUTATED 8 4 4
ERF WILD-TYPE 32 21 15
'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 1

Table S372.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
ERF MUTATED 1 8 7
ERF WILD-TYPE 0 23 45
'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S373.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
ERF MUTATED 4 6 2 4
ERF WILD-TYPE 27 14 9 18
'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S374.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
ERF MUTATED 6 3 7
ERF WILD-TYPE 31 13 24
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S375.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
ERF MUTATED 5 6 5
ERF WILD-TYPE 33 14 21
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S376.  Gene #47: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
ERF MUTATED 7 3 6
ERF WILD-TYPE 20 16 32
'SLC24A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S377.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SLC24A1 MUTATED 1 7 1
SLC24A1 WILD-TYPE 23 38 20
'SLC24A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S378.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SLC24A1 MUTATED 2 6 1
SLC24A1 WILD-TYPE 29 29 23
'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S379.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SLC24A1 MUTATED 3 3 3
SLC24A1 WILD-TYPE 37 22 16
'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00626 (Fisher's exact test), Q value = 1

Table S380.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SLC24A1 MUTATED 1 6 2
SLC24A1 WILD-TYPE 0 25 50

Figure S29.  Get High-res Image Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S381.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SLC24A1 MUTATED 2 4 3 0
SLC24A1 WILD-TYPE 29 16 8 22

Figure S30.  Get High-res Image Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S382.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
SLC24A1 MUTATED 2 2 5
SLC24A1 WILD-TYPE 35 14 26
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S383.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
SLC24A1 MUTATED 2 5 2
SLC24A1 WILD-TYPE 36 15 24
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S384.  Gene #48: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
SLC24A1 MUTATED 5 2 2
SLC24A1 WILD-TYPE 22 17 36
'TULP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S385.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
TULP1 MUTATED 4 4 0
TULP1 WILD-TYPE 20 41 21
'TULP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S386.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
TULP1 MUTATED 4 4 1
TULP1 WILD-TYPE 27 31 23
'TULP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S387.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
TULP1 MUTATED 2 2 5
TULP1 WILD-TYPE 38 23 14
'TULP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S388.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
TULP1 MUTATED 0 6 3
TULP1 WILD-TYPE 1 25 49
'TULP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S389.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
TULP1 MUTATED 2 2 3 2
TULP1 WILD-TYPE 29 18 8 20
'TULP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S390.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
TULP1 MUTATED 3 4 2
TULP1 WILD-TYPE 34 12 29
'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S391.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
TULP1 MUTATED 2 2 5
TULP1 WILD-TYPE 36 18 21
'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S392.  Gene #49: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
TULP1 MUTATED 2 4 3
TULP1 WILD-TYPE 25 15 35
'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S393.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
BMP2K MUTATED 3 9 1
BMP2K WILD-TYPE 21 36 20
'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S394.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
BMP2K MUTATED 4 7 3
BMP2K WILD-TYPE 27 28 21
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S395.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
BMP2K MUTATED 4 6 4
BMP2K WILD-TYPE 36 19 15
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 1

Table S396.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
BMP2K MUTATED 1 7 6
BMP2K WILD-TYPE 0 24 46
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S397.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
BMP2K MUTATED 4 5 3 2
BMP2K WILD-TYPE 27 15 8 20
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S398.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
BMP2K MUTATED 3 4 7
BMP2K WILD-TYPE 34 12 24
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S399.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
BMP2K MUTATED 6 3 5
BMP2K WILD-TYPE 32 17 21
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S400.  Gene #50: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
BMP2K MUTATED 6 3 5
BMP2K WILD-TYPE 21 16 33
'FADS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S401.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
FADS2 MUTATED 1 8 3
FADS2 WILD-TYPE 23 37 18
'FADS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
FADS2 MUTATED 4 6 3
FADS2 WILD-TYPE 27 29 21
'FADS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 1

Table S403.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
FADS2 MUTATED 2 2 8
FADS2 WILD-TYPE 38 23 11

Figure S31.  Get High-res Image Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 1

Table S404.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
FADS2 MUTATED 0 8 4
FADS2 WILD-TYPE 1 23 48
'FADS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S405.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
FADS2 MUTATED 2 2 4 4
FADS2 WILD-TYPE 29 18 7 18
'FADS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S406.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
FADS2 MUTATED 4 5 3
FADS2 WILD-TYPE 33 11 28
'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 1

Table S407.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
FADS2 MUTATED 3 1 8
FADS2 WILD-TYPE 35 19 18

Figure S32.  Get High-res Image Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S408.  Gene #51: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
FADS2 MUTATED 3 5 4
FADS2 WILD-TYPE 24 14 34
'SMG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S409.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SMG7 MUTATED 2 5 1
SMG7 WILD-TYPE 22 40 20
'SMG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S410.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SMG7 MUTATED 3 3 2
SMG7 WILD-TYPE 28 32 22
'SMG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S411.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SMG7 MUTATED 5 2 1
SMG7 WILD-TYPE 35 23 18
'SMG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S412.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SMG7 MUTATED 1 2 5
SMG7 WILD-TYPE 0 29 47
'SMG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S413.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SMG7 MUTATED 4 1 1 2
SMG7 WILD-TYPE 27 19 10 20
'SMG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S414.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 37 16 31
SMG7 MUTATED 4 1 3
SMG7 WILD-TYPE 33 15 28
'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S415.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 38 20 26
SMG7 MUTATED 5 2 1
SMG7 WILD-TYPE 33 18 25
'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S416.  Gene #52: 'SMG7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 19 38
SMG7 MUTATED 3 1 4
SMG7 WILD-TYPE 24 18 34
'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S417.  Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 24 45 21
SLC39A5 MUTATED 1 8 2
SLC39A5 WILD-TYPE 23 37 19
'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S418.  Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 31 35 24
SLC39A5 MUTATED 2 7 2
SLC39A5 WILD-TYPE 29 28 22
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S419.  Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 40 25 19
SLC39A5 MUTATED 3 5 3
SLC39A5 WILD-TYPE 37 20 16
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S420.  Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 1 31 52
SLC39A5 MUTATED 0 7 4
SLC39A5 WILD-TYPE 1 24 48
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00397 (Fisher's exact test), Q value = 1

Table S421.  Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 31 20 11 22
SLC39A5 MUTATED 0 4 4 3
SLC39A5 WILD-TYPE 31 16 7 19

Figure S33.  Get High-res Image Gene #53: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1