PARADIGM pathway analysis of mRNASeq expression data
Esophageal Carcinoma (Primary solid tumor)
02 April 2015  |  analyses__2015_04_02
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C14748VR
- Overview
+ Introduction
- Summary

There were 38 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
TCGA08_retinoblastoma 58
Signaling events mediated by the Hedgehog family 56
FOXA2 and FOXA3 transcription factor networks 51
Glypican 1 network 28
p75(NTR)-mediated signaling 25
Ephrin B reverse signaling 24
IL23-mediated signaling events 23
IL4-mediated signaling events 22
TCGA08_p53 22
Glucocorticoid receptor regulatory network 19
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data