Correlation between gene mutation status and molecular subtypes
Pancreatic Adenocarcinoma (Primary solid tumor)
15 January 2014  |  analyses__2014_01_15
Maintainer Information
Citation Information
doi:10.7908/C1WQ028S
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1WQ028S
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 106 genes and 8 molecular subtypes across 57 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 106 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
C15ORF24 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.622
(1.00) 		0.248
(1.00) 		0.621
(1.00) 		0.848
(1.00) 		0.214
(1.00) 		0.261
(1.00)
IRS1 5 (9%) 52 0.336
(1.00) 		0.506
(1.00) 		0.741
(1.00) 		1
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.711
(1.00) 		1
(1.00)
FYN 5 (9%) 52 0.126
(1.00) 		0.244
(1.00) 		0.0383
(1.00) 		0.0972
(1.00) 		0.164
(1.00) 		0.451
(1.00) 		0.0919
(1.00) 		0.0693
(1.00)
FADS2 5 (9%) 52 1
(1.00) 		0.712
(1.00) 		0.412
(1.00) 		1
(1.00) 		0.215
(1.00) 		0.0964
(1.00) 		0.711
(1.00) 		0.0239
(1.00)
C14ORF49 9 (16%) 48 0.31
(1.00) 		0.117
(1.00) 		0.259
(1.00) 		0.233
(1.00) 		0.149
(1.00) 		0.191
(1.00) 		0.441
(1.00) 		0.239
(1.00)
FGF10 6 (11%) 51 1
(1.00) 		0.103
(1.00) 		0.622
(1.00) 		0.423
(1.00) 		0.155
(1.00) 		0.848
(1.00) 		0.0911
(1.00) 		0.261
(1.00)
CEL 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.391
(1.00) 		0.29
(1.00)
CCR3 5 (9%) 52 0.7
(1.00) 		0.712
(1.00) 		0.738
(1.00) 		1
(1.00) 		0.582
(1.00) 		0.694
(1.00) 		0.831
(1.00) 		0.832
(1.00)
OR10A2 6 (11%) 51 0.339
(1.00) 		0.08
(1.00) 		0.0383
(1.00) 		0.132
(1.00) 		0.057
(1.00) 		0.0482
(1.00) 		0.272
(1.00) 		0.109
(1.00)
OR10A7 9 (16%) 48 0.718
(1.00) 		0.342
(1.00) 		0.0971
(1.00) 		0.415
(1.00) 		0.396
(1.00) 		0.786
(1.00) 		0.622
(1.00) 		0.49
(1.00)
POP5 5 (9%) 52 0.126
(1.00) 		0.155
(1.00) 		0.0199
(1.00) 		0.132
(1.00) 		0.029
(1.00) 		0.451
(1.00) 		0.0919
(1.00) 		0.0693
(1.00)
SRP14 7 (12%) 50 1
(1.00) 		1
(1.00) 		0.932
(1.00) 		0.514
(1.00) 		0.758
(1.00) 		0.492
(1.00) 		0.204
(1.00) 		0.426
(1.00)
WRN 5 (9%) 52 0.329
(1.00) 		0.845
(1.00) 		0.914
(1.00) 		0.611
(1.00) 		0.691
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
TMEM40 9 (16%) 48 0.691
(1.00) 		0.342
(1.00) 		0.567
(1.00) 		1
(1.00) 		0.561
(1.00) 		0.786
(1.00) 		0.317
(1.00) 		1
(1.00)
KRAS 33 (58%) 24 0.0479
(1.00) 		0.000979
(0.82) 		0.0506
(1.00) 		0.0158
(1.00) 		0.0805
(1.00) 		0.133
(1.00) 		0.207
(1.00) 		0.286
(1.00)
TP53 37 (65%) 20 0.0713
(1.00) 		0.00522
(1.00) 		0.125
(1.00) 		0.0992
(1.00) 		0.419
(1.00) 		0.389
(1.00) 		0.302
(1.00) 		0.497
(1.00)
QRICH1 7 (12%) 50 0.0687
(1.00) 		0.123
(1.00) 		0.386
(1.00) 		0.0845
(1.00) 		0.426
(1.00) 		0.12
(1.00) 		0.00445
(1.00) 		0.11
(1.00)
ST6GALNAC5 6 (11%) 51 1
(1.00) 		0.356
(1.00) 		0.655
(1.00) 		0.82
(1.00) 		1
(1.00) 		1
(1.00) 		0.721
(1.00) 		1
(1.00)
TNFSF9 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.169
(1.00) 		0.135
(1.00) 		0.451
(1.00) 		0.848
(1.00) 		0.112
(1.00) 		0.851
(1.00)
CDKN2A 13 (23%) 44 0.413
(1.00) 		0.11
(1.00) 		0.599
(1.00) 		0.876
(1.00) 		0.213
(1.00) 		0.82
(1.00) 		0.906
(1.00) 		0.753
(1.00)
SEH1L 8 (14%) 49 0.405
(1.00) 		0.388
(1.00) 		0.589
(1.00) 		0.608
(1.00) 		0.689
(1.00) 		0.0889
(1.00) 		0.0339
(1.00) 		0.104
(1.00)
SCD 8 (14%) 49 0.405
(1.00) 		0.388
(1.00) 		0.093
(1.00) 		1
(1.00) 		0.357
(1.00) 		0.77
(1.00) 		0.6
(1.00) 		0.275
(1.00)
TMC4 9 (16%) 48 0.889
(1.00) 		0.214
(1.00) 		0.39
(1.00) 		0.153
(1.00) 		0.136
(1.00) 		0.516
(1.00) 		0.676
(1.00) 		0.462
(1.00)
MED15 9 (16%) 48 1
(1.00) 		0.816
(1.00) 		0.665
(1.00) 		0.375
(1.00) 		0.632
(1.00) 		1
(1.00) 		0.492
(1.00) 		1
(1.00)
TNFRSF9 6 (11%) 51 1
(1.00) 		0.549
(1.00) 		0.595
(1.00) 		0.611
(1.00) 		0.527
(1.00) 		0.436
(1.00) 		0.857
(1.00) 		0.63
(1.00)
BRDT 8 (14%) 49 0.405
(1.00) 		0.388
(1.00) 		0.479
(1.00) 		0.836
(1.00) 		0.0503
(1.00) 		0.391
(1.00) 		0.467
(1.00) 		0.522
(1.00)
CXXC4 6 (11%) 51 0.7
(1.00) 		0.748
(1.00) 		0.932
(1.00) 		0.645
(1.00) 		0.855
(1.00) 		0.521
(1.00) 		1
(1.00) 		0.541
(1.00)
MBD3 6 (11%) 51 1
(1.00) 		0.866
(1.00) 		0.689
(1.00) 		0.771
(1.00) 		0.451
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
TULP1 6 (11%) 51 0.238
(1.00) 		0.549
(1.00) 		0.227
(1.00) 		0.423
(1.00) 		0.057
(1.00) 		0.115
(1.00) 		0.272
(1.00) 		0.00854
(1.00)
PHF13 4 (7%) 53 0.66
(1.00) 		0.0816
(1.00) 		0.236
(1.00) 		0.118
(1.00) 		0.323
(1.00) 		0.499
(1.00) 		0.0922
(1.00) 		0.657
(1.00)
BHLHB9 5 (9%) 52 0.255
(1.00) 		0.0507
(1.00) 		0.118
(1.00) 		0.0485
(1.00) 		0.0892
(1.00) 		0.073
(1.00) 		0.0353
(1.00) 		0.0364
(1.00)
PRDM8 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.914
(1.00) 		1
(1.00) 		0.235
(1.00) 		0.0806
(1.00) 		0.214
(1.00) 		0.0729
(1.00)
SMAD4 10 (18%) 47 0.113
(1.00) 		0.0402
(1.00) 		0.235
(1.00) 		0.182
(1.00) 		0.0725
(1.00) 		0.335
(1.00) 		0.134
(1.00) 		0.209
(1.00)
C14ORF43 7 (12%) 50 0.655
(1.00) 		0.145
(1.00) 		0.355
(1.00) 		0.584
(1.00) 		1
(1.00) 		1
(1.00) 		0.578
(1.00) 		0.658
(1.00)
MEPCE 7 (12%) 50 0.147
(1.00) 		0.592
(1.00) 		0.479
(1.00) 		0.836
(1.00) 		0.233
(1.00) 		0.0603
(1.00) 		0.138
(1.00) 		0.0871
(1.00)
HVCN1 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.0789
(1.00) 		0.391
(1.00) 		0.0155
(1.00)
FOXP2 8 (14%) 49 0.782
(1.00) 		0.625
(1.00) 		0.479
(1.00) 		0.836
(1.00) 		0.0503
(1.00) 		0.192
(1.00) 		0.275
(1.00) 		0.316
(1.00)
GRIN1 5 (9%) 52 0.41
(1.00) 		0.712
(1.00) 		0.0932
(1.00) 		1
(1.00) 		0.215
(1.00) 		1
(1.00) 		0.485
(1.00) 		0.247
(1.00)
MAGEA10 4 (7%) 53 0.164
(1.00) 		0.349
(1.00) 		0.0843
(1.00) 		0.189
(1.00) 		0.0728
(1.00) 		0.499
(1.00) 		0.17
(1.00) 		0.0591
(1.00)
C16ORF79 4 (7%) 53 1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ERF 6 (11%) 51 0.339
(1.00) 		0.182
(1.00) 		0.138
(1.00) 		0.611
(1.00) 		0.0759
(1.00) 		0.154
(1.00) 		0.272
(1.00) 		0.261
(1.00)
IFNGR2 4 (7%) 53 0.66
(1.00) 		0.272
(1.00) 		0.209
(1.00) 		0.511
(1.00) 		0.66
(1.00) 		0.499
(1.00) 		0.663
(1.00) 		0.657
(1.00)
OLIG3 5 (9%) 52 0.7
(1.00) 		0.593
(1.00) 		0.181
(1.00) 		0.0191
(1.00) 		0.0892
(1.00) 		0.367
(1.00) 		0.114
(1.00) 		0.313
(1.00)
NDEL1 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.391
(1.00) 		0.29
(1.00)
EGR1 8 (14%) 49 0.691
(1.00) 		0.705
(1.00) 		0.817
(1.00) 		0.82
(1.00) 		0.462
(1.00) 		0.872
(1.00) 		0.315
(1.00) 		0.881
(1.00)
CDH3 4 (7%) 53 0.799
(1.00) 		0.272
(1.00) 		0.0222
(1.00) 		0.431
(1.00) 		0.0511
(1.00) 		0.362
(1.00) 		0.391
(1.00) 		0.383
(1.00)
PCDHAC2 9 (16%) 48 0.272
(1.00) 		0.0367
(1.00) 		0.82
(1.00) 		0.329
(1.00) 		0.882
(1.00) 		1
(1.00) 		0.676
(1.00) 		1
(1.00)
ZFP36 4 (7%) 53 0.799
(1.00) 		0.349
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.431
(1.00) 		0.362
(1.00) 		0.391
(1.00) 		0.383
(1.00)
NR4A3 5 (9%) 52 0.329
(1.00) 		0.0507
(1.00) 		0.855
(1.00) 		0.771
(1.00) 		1
(1.00) 		0.837
(1.00) 		1
(1.00) 		1
(1.00)
RAB11FIP5 5 (9%) 52 0.584
(1.00) 		0.244
(1.00) 		0.451
(1.00) 		0.743
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.711
(1.00) 		1
(1.00)
OTUD4 7 (12%) 50 0.205
(1.00) 		1
(1.00) 		0.298
(1.00) 		1
(1.00) 		0.66
(1.00) 		1
(1.00) 		0.761
(1.00) 		0.658
(1.00)
PPARGC1B 7 (12%) 50 1
(1.00) 		0.592
(1.00) 		0.938
(1.00) 		0.707
(1.00) 		0.873
(1.00) 		0.492
(1.00) 		0.086
(1.00) 		0.658
(1.00)
PDZD2 9 (16%) 48 0.57
(1.00) 		0.462
(1.00) 		0.513
(1.00) 		0.534
(1.00) 		0.506
(1.00) 		0.191
(1.00) 		0.0688
(1.00) 		0.0558
(1.00)
NPNT 4 (7%) 53 0.336
(1.00) 		1
(1.00) 		0.738
(1.00) 		0.743
(1.00) 		0.66
(1.00) 		0.812
(1.00) 		1
(1.00) 		1
(1.00)
MED9 3 (5%) 54 0.282
(1.00) 		0.0131
(1.00) 		0.589
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
BCL2L1 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		0.767
(1.00) 		0.289
(1.00) 		0.589
(1.00) 		1
(1.00) 		0.582
(1.00) 		1
(1.00)
CPLX3 3 (5%) 54 0.414
(1.00) 		0.603
(1.00) 		0.203
(1.00) 		0.431
(1.00) 		0.0663
(1.00) 		0.112
(1.00) 		0.138
(1.00) 		0.129
(1.00)
IRX4 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
NFAT5 8 (14%) 49 0.782
(1.00) 		0.388
(1.00) 		0.567
(1.00) 		0.862
(1.00) 		0.783
(1.00) 		0.516
(1.00) 		0.886
(1.00) 		0.881
(1.00)
WASF3 5 (9%) 52 0.584
(1.00) 		0.244
(1.00) 		0.209
(1.00) 		0.511
(1.00) 		0.582
(1.00) 		0.694
(1.00) 		1
(1.00) 		0.832
(1.00)
ABCC2 6 (11%) 51 0.238
(1.00) 		0.182
(1.00) 		0.255
(1.00) 		0.423
(1.00) 		0.527
(1.00) 		0.154
(1.00) 		0.272
(1.00) 		0.261
(1.00)
ATP13A3 4 (7%) 53 0.53
(1.00) 		0.272
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.827
(1.00) 		1
(1.00)
ARHGAP18 4 (7%) 53 0.414
(1.00) 		0.349
(1.00) 		0.071
(1.00) 		0.189
(1.00) 		0.0728
(1.00) 		0.362
(1.00) 		0.17
(1.00) 		0.165
(1.00)
CIR1 3 (5%) 54 1
(1.00) 		0.603
(1.00) 		0.188
(1.00) 		0.755
(1.00) 		0.582
(1.00) 		0.776
(1.00)
KIAA0020 4 (7%) 53 0.799
(1.00) 		0.272
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.431
(1.00) 		1
(1.00) 		0.391
(1.00) 		0.657
(1.00)
ZNF608 6 (11%) 51 0.0687
(1.00) 		0.103
(1.00) 		0.622
(1.00) 		0.423
(1.00) 		0.155
(1.00) 		0.154
(1.00) 		0.0455
(1.00) 		0.0184
(1.00)
NEDD4L 6 (11%) 51 1
(1.00) 		0.466
(1.00) 		0.817
(1.00) 		0.82
(1.00) 		0.733
(1.00) 		0.36
(1.00) 		0.857
(1.00) 		0.317
(1.00)
THBS4 6 (11%) 51 0.339
(1.00) 		0.103
(1.00) 		0.138
(1.00) 		0.611
(1.00) 		0.527
(1.00) 		0.848
(1.00) 		0.214
(1.00) 		0.261
(1.00)
MMRN1 6 (11%) 51 1
(1.00) 		0.748
(1.00) 		0.914
(1.00) 		1
(1.00) 		0.733
(1.00) 		0.848
(1.00) 		0.626
(1.00) 		0.851
(1.00)
GPR25 3 (5%) 54 0.414
(1.00) 		0.603
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.112
(1.00) 		0.293
(1.00) 		0.129
(1.00)
SORBS2 6 (11%) 51 0.522
(1.00) 		0.0307
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
SULT1C3 3 (5%) 54 0.795
(1.00) 		0.102
(1.00) 		0.88
(1.00) 		0.667
(1.00) 		0.589
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ECSIT 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.391
(1.00) 		0.29
(1.00)
ZNF326 4 (7%) 53 0.799
(1.00) 		0.272
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.66
(1.00) 		0.499
(1.00) 		0.663
(1.00) 		0.657
(1.00)
C15ORF52 3 (5%) 54 1
(1.00) 		0.603
(1.00) 		0.786
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
SLC39A5 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.755
(1.00) 		0.582
(1.00) 		0.776
(1.00)
SLC24A1 4 (7%) 53 0.164
(1.00) 		0.349
(1.00) 		0.451
(1.00) 		0.743
(1.00) 		0.431
(1.00) 		0.113
(1.00) 		0.17
(1.00) 		0.165
(1.00)
PUM2 5 (9%) 52 0.41
(1.00) 		0.712
(1.00) 		0.638
(1.00) 		1
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.312
(1.00) 		0.247
(1.00)
SYT2 5 (9%) 52 0.126
(1.00) 		0.0249
(1.00) 		0.15
(1.00) 		0.132
(1.00) 		0.029
(1.00) 		0.0425
(1.00) 		0.0919
(1.00) 		0.0693
(1.00)
SLITRK5 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.255
(1.00) 		1
(1.00) 		0.527
(1.00) 		0.848
(1.00) 		0.214
(1.00) 		0.261
(1.00)
NAP1L3 3 (5%) 54 1
(1.00) 		0.782
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
PHF14 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
CCDC28B 4 (7%) 53 0.164
(1.00) 		0.349
(1.00) 		0.0142
(1.00) 		0.118
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.17
(1.00) 		0.29
(1.00)
PDE12 3 (5%) 54 0.603
(1.00) 		0.786
(1.00) 		0.755
(1.00) 		0.786
(1.00) 		0.776
(1.00)
FLAD1 3 (5%) 54 0.414
(1.00) 		0.175
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.117
(1.00) 		0.182
(1.00) 		0.138
(1.00) 		0.208
(1.00)
ENG 3 (5%) 54 0.414
(1.00) 		0.175
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.117
(1.00) 		0.03
(1.00) 		0.293
(1.00) 		0.0392
(1.00)
PABPC1 4 (7%) 53 0.53
(1.00) 		0.556
(1.00) 		0.767
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ATG16L2 3 (5%) 54 1
(1.00) 		0.331
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		0.376
(1.00) 		0.786
(1.00) 		0.0796
(1.00)
LRCH1 7 (12%) 50 0.655
(1.00) 		0.451
(1.00) 		0.298
(1.00) 		1
(1.00) 		0.66
(1.00) 		0.655
(1.00) 		0.761
(1.00) 		0.226
(1.00)
PLCZ1 3 (5%) 54 1
(1.00) 		0.331
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.776
(1.00)
TAOK2 6 (11%) 51 1
(1.00) 		1
(1.00) 		1
(1.00) 		0.645
(1.00) 		1
(1.00) 		0.848
(1.00) 		0.112
(1.00) 		0.851
(1.00)
ZMIZ1 6 (11%) 51 0.149
(1.00) 		0.866
(1.00) 		0.554
(1.00) 		0.463
(1.00) 		0.855
(1.00) 		1
(1.00) 		0.332
(1.00) 		1
(1.00)
SYT15 6 (11%) 51 1
(1.00) 		0.0617
(1.00) 		0.817
(1.00) 		0.82
(1.00) 		1
(1.00) 		0.724
(1.00) 		0.857
(1.00) 		0.851
(1.00)
LRTM1 3 (5%) 54 0.414
(1.00) 		0.175
(1.00) 		0.00345
(1.00) 		0.289
(1.00) 		1
(1.00) 		0.376
(1.00) 		0.582
(1.00) 		0.392
(1.00)
TIMM50 4 (7%) 53 0.336
(1.00) 		0.556
(1.00) 		0.408
(1.00) 		1
(1.00) 		0.799
(1.00) 		0.812
(1.00) 		0.827
(1.00) 		1
(1.00)
CCNK 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.296
(1.00) 		1
(1.00) 		0.66
(1.00) 		0.499
(1.00) 		0.663
(1.00) 		0.657
(1.00)
TTK 5 (9%) 52 0.126
(1.00) 		0.244
(1.00) 		0.595
(1.00) 		0.343
(1.00) 		0.833
(1.00) 		0.224
(1.00) 		0.0713
(1.00) 		0.247
(1.00)
TMEM175 4 (7%) 53 0.66
(1.00) 		0.349
(1.00) 		0.676
(1.00) 		0.743
(1.00) 		0.323
(1.00) 		0.0273
(1.00) 		0.17
(1.00) 		0.0323
(1.00)
CD93 5 (9%) 52 1
(1.00) 		0.00748
(1.00) 		0.554
(1.00) 		0.235
(1.00) 		0.483
(1.00) 		0.837
(1.00) 		0.384
(1.00) 		1
(1.00)
C19ORF55 4 (7%) 53 0.53
(1.00) 		0.0289
(1.00) 		0.88
(1.00) 		0.667
(1.00) 		0.541
(1.00) 		1
(1.00) 		0.827
(1.00) 		1
(1.00)
MRPL48 3 (5%) 54 1
(1.00) 		0.603
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.112
(1.00) 		0.041
(1.00) 		0.129
(1.00)
PVRL1 5 (9%) 52 0.41
(1.00) 		0.845
(1.00) 		0.0932
(1.00) 		1
(1.00) 		0.215
(1.00) 		0.451
(1.00) 		0.485
(1.00) 		0.478
(1.00)
ACIN1 3 (5%) 54 1
(1.00) 		0.331
(1.00) 		0.589
(1.00) 		0.755
(1.00) 		0.582
(1.00) 		0.776
(1.00)
MAML3 7 (12%) 50 0.879
(1.00) 		0.145
(1.00) 		0.5
(1.00) 		0.464
(1.00) 		0.325
(1.00) 		0.741
(1.00) 		1
(1.00) 		1
(1.00)
EDC4 5 (9%) 52 1
(1.00) 		0.712
(1.00) 		0.495
(1.00) 		0.667
(1.00) 		1
(1.00) 		1
(1.00) 		0.384
(1.00) 		1
(1.00)
SETD1A 3 (5%) 54 0.795
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		1
(1.00) 		0.582
(1.00) 		0.776
(1.00)
'C15ORF24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C15ORF24 MUTATED 1 5 0
C15ORF24 WILD-TYPE 12 24 14
'C15ORF24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C15ORF24 MUTATED 1 3 2
C15ORF24 WILD-TYPE 17 21 12
'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C15ORF24 MUTATED 1 2 2 1
C15ORF24 WILD-TYPE 17 10 7 7
'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C15ORF24 MUTATED 1 1 4
C15ORF24 WILD-TYPE 3 17 21
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C15ORF24 MUTATED 2 2 2
C15ORF24 WILD-TYPE 23 9 12
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C15ORF24 MUTATED 1 3 2
C15ORF24 WILD-TYPE 7 16 21
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C15ORF24 MUTATED 1 2 3
C15ORF24 WILD-TYPE 20 7 17
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C15ORF24 MUTATED 2 1 3
C15ORF24 WILD-TYPE 7 21 16
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S9.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
IRS1 MUTATED 2 2 0
IRS1 WILD-TYPE 11 27 14
'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S10.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
IRS1 MUTATED 2 3 0
IRS1 WILD-TYPE 16 21 14
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
IRS1 MUTATED 2 2 0 1
IRS1 WILD-TYPE 16 10 9 7
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
IRS1 MUTATED 0 2 3
IRS1 WILD-TYPE 4 16 22
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
IRS1 MUTATED 2 1 2
IRS1 WILD-TYPE 23 10 12
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
IRS1 MUTATED 1 2 2
IRS1 WILD-TYPE 7 17 21
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
IRS1 MUTATED 2 0 3
IRS1 WILD-TYPE 19 9 17
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
IRS1 MUTATED 1 2 2
IRS1 WILD-TYPE 8 20 17
'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S17.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FYN MUTATED 0 5 0
FYN WILD-TYPE 13 24 14
'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S18.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FYN MUTATED 0 3 2
FYN WILD-TYPE 18 21 12
'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S19.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FYN MUTATED 0 1 3 1
FYN WILD-TYPE 18 11 6 7

Figure S1.  Get High-res Image Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 1

Table S20.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FYN MUTATED 1 0 4
FYN WILD-TYPE 3 18 21
'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FYN MUTATED 1 1 3
FYN WILD-TYPE 24 10 11
'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FYN MUTATED 1 3 1
FYN WILD-TYPE 7 16 22
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FYN MUTATED 0 1 4
FYN WILD-TYPE 21 8 16
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FYN MUTATED 2 0 3
FYN WILD-TYPE 7 22 16
'FADS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S25.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FADS2 MUTATED 1 3 1
FADS2 WILD-TYPE 12 26 13
'FADS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S26.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FADS2 MUTATED 1 2 2
FADS2 WILD-TYPE 17 22 12
'FADS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S27.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FADS2 MUTATED 2 0 2 1
FADS2 WILD-TYPE 16 12 7 7
'FADS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FADS2 MUTATED 0 2 3
FADS2 WILD-TYPE 4 16 22
'FADS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S29.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FADS2 MUTATED 2 0 3
FADS2 WILD-TYPE 23 11 11
'FADS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0964 (Fisher's exact test), Q value = 1

Table S30.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FADS2 MUTATED 2 0 3
FADS2 WILD-TYPE 6 19 20
'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FADS2 MUTATED 2 0 3
FADS2 WILD-TYPE 19 9 17
'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FADS2 MUTATED 3 2 0
FADS2 WILD-TYPE 6 20 19

Figure S2.  Get High-res Image Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C14ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S33.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C14ORF49 MUTATED 1 7 1
C14ORF49 WILD-TYPE 12 22 13
'C14ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S34.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C14ORF49 MUTATED 1 7 1
C14ORF49 WILD-TYPE 17 17 13
'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S35.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C14ORF49 MUTATED 1 2 3 1
C14ORF49 WILD-TYPE 17 10 6 7
'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S36.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C14ORF49 MUTATED 0 1 6
C14ORF49 WILD-TYPE 4 17 19
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S37.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C14ORF49 MUTATED 2 3 4
C14ORF49 WILD-TYPE 23 8 10
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S38.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C14ORF49 MUTATED 3 4 2
C14ORF49 WILD-TYPE 5 15 21
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C14ORF49 MUTATED 2 2 5
C14ORF49 WILD-TYPE 19 7 15
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C14ORF49 MUTATED 3 2 4
C14ORF49 WILD-TYPE 6 20 15
'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S41.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FGF10 MUTATED 1 4 1
FGF10 WILD-TYPE 12 25 13
'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S42.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FGF10 MUTATED 0 3 3
FGF10 WILD-TYPE 18 21 11
'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S43.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FGF10 MUTATED 1 2 2 1
FGF10 WILD-TYPE 17 10 7 7
'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S44.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FGF10 MUTATED 0 1 5
FGF10 WILD-TYPE 4 17 20
'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S45.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FGF10 MUTATED 1 2 3
FGF10 WILD-TYPE 24 9 11
'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S46.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FGF10 MUTATED 1 3 2
FGF10 WILD-TYPE 7 16 21
'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S47.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FGF10 MUTATED 1 0 5
FGF10 WILD-TYPE 20 9 15
'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S48.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FGF10 MUTATED 2 1 3
FGF10 WILD-TYPE 7 21 16
'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S49.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CEL MUTATED 1 3 0
CEL WILD-TYPE 12 26 14
'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S50.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CEL MUTATED 1 2 1
CEL WILD-TYPE 17 22 13
'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S51.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CEL MUTATED 1 0 3 0
CEL WILD-TYPE 17 12 6 8

Figure S3.  Get High-res Image Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S52.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CEL MUTATED 0 1 3
CEL WILD-TYPE 4 17 22
'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S53.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CEL MUTATED 1 0 3
CEL WILD-TYPE 24 11 11
'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S54.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CEL MUTATED 1 1 2
CEL WILD-TYPE 7 18 21
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S55.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CEL MUTATED 1 0 3
CEL WILD-TYPE 20 9 17
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CEL MUTATED 2 1 1
CEL WILD-TYPE 7 21 18
'CCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S57.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CCR3 MUTATED 2 2 1
CCR3 WILD-TYPE 11 27 13
'CCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S58.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CCR3 MUTATED 1 2 2
CCR3 WILD-TYPE 17 22 12
'CCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S59.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CCR3 MUTATED 2 0 1 1
CCR3 WILD-TYPE 16 12 8 7
'CCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S60.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CCR3 MUTATED 0 2 2
CCR3 WILD-TYPE 4 16 23
'CCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S61.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CCR3 MUTATED 3 0 2
CCR3 WILD-TYPE 22 11 12
'CCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S62.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CCR3 MUTATED 1 1 3
CCR3 WILD-TYPE 7 18 20
'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S63.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CCR3 MUTATED 3 0 2
CCR3 WILD-TYPE 18 9 18
'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CCR3 MUTATED 1 3 1
CCR3 WILD-TYPE 8 19 18
'OR10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S65.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OR10A2 MUTATED 0 5 1
OR10A2 WILD-TYPE 13 24 13
'OR10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S66.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OR10A2 MUTATED 0 5 1
OR10A2 WILD-TYPE 18 19 13
'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S67.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OR10A2 MUTATED 0 1 3 1
OR10A2 WILD-TYPE 18 11 6 7

Figure S4.  Get High-res Image Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S68.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OR10A2 MUTATED 0 0 5
OR10A2 WILD-TYPE 4 18 20
'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S69.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OR10A2 MUTATED 1 1 4
OR10A2 WILD-TYPE 24 10 10
'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 1

Table S70.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OR10A2 MUTATED 3 2 1
OR10A2 WILD-TYPE 5 17 22

Figure S5.  Get High-res Image Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S71.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OR10A2 MUTATED 1 1 4
OR10A2 WILD-TYPE 20 8 16
'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S72.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OR10A2 MUTATED 3 1 2
OR10A2 WILD-TYPE 6 21 17
'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S73.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OR10A7 MUTATED 1 6 2
OR10A7 WILD-TYPE 12 23 12
'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S74.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OR10A7 MUTATED 1 5 3
OR10A7 WILD-TYPE 17 19 11
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OR10A7 MUTATED 2 2 4 0
OR10A7 WILD-TYPE 16 10 5 8
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S76.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OR10A7 MUTATED 0 2 6
OR10A7 WILD-TYPE 4 16 19
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S77.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OR10A7 MUTATED 3 2 4
OR10A7 WILD-TYPE 22 9 10
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S78.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OR10A7 MUTATED 2 3 4
OR10A7 WILD-TYPE 6 16 19
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S79.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OR10A7 MUTATED 3 1 5
OR10A7 WILD-TYPE 18 8 15
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S80.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OR10A7 MUTATED 3 3 3
OR10A7 WILD-TYPE 6 19 16
'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S81.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
POP5 MUTATED 0 5 0
POP5 WILD-TYPE 13 24 14
'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S82.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
POP5 MUTATED 0 4 1
POP5 WILD-TYPE 18 20 13
'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S83.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
POP5 MUTATED 0 2 3 0
POP5 WILD-TYPE 18 10 6 8

Figure S6.  Get High-res Image Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S84.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
POP5 MUTATED 0 0 5
POP5 WILD-TYPE 4 18 20
'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S85.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
POP5 MUTATED 0 2 3
POP5 WILD-TYPE 25 9 11

Figure S7.  Get High-res Image Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S86.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
POP5 MUTATED 1 3 1
POP5 WILD-TYPE 7 16 22
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S87.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
POP5 MUTATED 0 1 4
POP5 WILD-TYPE 21 8 16
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S88.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
POP5 MUTATED 2 0 3
POP5 WILD-TYPE 7 22 16
'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SRP14 MUTATED 1 4 2
SRP14 WILD-TYPE 12 25 12
'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S90.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SRP14 MUTATED 2 3 2
SRP14 WILD-TYPE 16 21 12
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S91.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SRP14 MUTATED 3 1 1 1
SRP14 WILD-TYPE 15 11 8 7
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S92.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SRP14 MUTATED 1 3 2
SRP14 WILD-TYPE 3 15 23
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S93.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SRP14 MUTATED 4 2 1
SRP14 WILD-TYPE 21 9 13
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S94.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SRP14 MUTATED 0 4 3
SRP14 WILD-TYPE 8 15 20
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S95.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SRP14 MUTATED 2 3 2
SRP14 WILD-TYPE 19 6 18
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S96.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SRP14 MUTATED 0 3 4
SRP14 WILD-TYPE 9 19 15
'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S97.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
WRN MUTATED 2 3 0
WRN WILD-TYPE 11 26 14
'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S98.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
WRN MUTATED 1 3 1
WRN WILD-TYPE 17 21 13
'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S99.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
WRN MUTATED 2 2 1 0
WRN WILD-TYPE 16 10 8 8
'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S100.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
WRN MUTATED 0 1 4
WRN WILD-TYPE 4 17 21
'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S101.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
WRN MUTATED 2 2 1
WRN WILD-TYPE 23 9 13
'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S102.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
WRN MUTATED 1 2 2
WRN WILD-TYPE 7 17 21
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
WRN MUTATED 2 1 2
WRN WILD-TYPE 19 8 18
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
WRN MUTATED 1 2 2
WRN WILD-TYPE 8 20 17
'TMEM40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S105.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TMEM40 MUTATED 1 4 3
TMEM40 WILD-TYPE 12 25 11
'TMEM40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S106.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TMEM40 MUTATED 1 5 3
TMEM40 WILD-TYPE 17 19 11
'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S107.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TMEM40 MUTATED 3 1 3 1
TMEM40 WILD-TYPE 15 11 6 7
'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S108.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TMEM40 MUTATED 0 3 5
TMEM40 WILD-TYPE 4 15 20
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S109.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TMEM40 MUTATED 4 1 4
TMEM40 WILD-TYPE 21 10 10
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S110.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TMEM40 MUTATED 2 3 4
TMEM40 WILD-TYPE 6 16 19
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S111.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TMEM40 MUTATED 4 0 5
TMEM40 WILD-TYPE 17 9 15
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S112.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TMEM40 MUTATED 2 4 3
TMEM40 WILD-TYPE 7 18 16
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 1

Table S113.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
KRAS MUTATED 11 13 9
KRAS WILD-TYPE 2 16 5

Figure S8.  Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.000979 (Fisher's exact test), Q value = 0.82

Table S114.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
KRAS MUTATED 13 7 12
KRAS WILD-TYPE 5 17 2

Figure S9.  Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
KRAS MUTATED 14 4 3 4
KRAS WILD-TYPE 4 8 6 4
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 1

Table S116.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
KRAS MUTATED 2 14 9
KRAS WILD-TYPE 2 4 16

Figure S10.  Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 1

Table S117.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
KRAS MUTATED 17 4 5
KRAS WILD-TYPE 8 7 9
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S118.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
KRAS MUTATED 2 9 15
KRAS WILD-TYPE 6 10 8
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S119.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
KRAS MUTATED 14 4 8
KRAS WILD-TYPE 7 5 12
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S120.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
KRAS MUTATED 3 14 9
KRAS WILD-TYPE 6 8 10
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S121.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TP53 MUTATED 10 15 12
TP53 WILD-TYPE 3 14 2
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00522 (Fisher's exact test), Q value = 1

Table S122.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TP53 MUTATED 16 10 10
TP53 WILD-TYPE 2 14 4

Figure S11.  Get High-res Image Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S123.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TP53 MUTATED 15 8 5 3
TP53 WILD-TYPE 3 4 4 5
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S124.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TP53 MUTATED 2 15 14
TP53 WILD-TYPE 2 3 11
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S125.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TP53 MUTATED 18 7 7
TP53 WILD-TYPE 7 4 7
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S126.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TP53 MUTATED 4 11 17
TP53 WILD-TYPE 4 8 6
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S127.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TP53 MUTATED 16 5 11
TP53 WILD-TYPE 5 4 9
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S128.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TP53 MUTATED 5 16 11
TP53 WILD-TYPE 4 6 8
'QRICH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S129.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
QRICH1 MUTATED 0 6 0
QRICH1 WILD-TYPE 13 23 14
'QRICH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S130.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
QRICH1 MUTATED 0 4 3
QRICH1 WILD-TYPE 18 20 11
'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S131.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
QRICH1 MUTATED 1 3 1 2
QRICH1 WILD-TYPE 17 9 8 6
'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 1

Table S132.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
QRICH1 MUTATED 2 1 4
QRICH1 WILD-TYPE 2 17 21
'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S133.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
QRICH1 MUTATED 3 3 1
QRICH1 WILD-TYPE 22 8 13
'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S134.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
QRICH1 MUTATED 1 5 1
QRICH1 WILD-TYPE 7 14 22
'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 1

Table S135.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
QRICH1 MUTATED 0 4 3
QRICH1 WILD-TYPE 21 5 17

Figure S12.  Get High-res Image Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S136.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
QRICH1 MUTATED 1 1 5
QRICH1 WILD-TYPE 8 21 14
'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ST6GALNAC5 MUTATED 1 4 1
ST6GALNAC5 WILD-TYPE 12 25 13
'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S138.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ST6GALNAC5 MUTATED 3 3 0
ST6GALNAC5 WILD-TYPE 15 21 14
'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S139.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ST6GALNAC5 MUTATED 3 1 2 0
ST6GALNAC5 WILD-TYPE 15 11 7 8
'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S140.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ST6GALNAC5 MUTATED 0 3 3
ST6GALNAC5 WILD-TYPE 4 15 22
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S141.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ST6GALNAC5 MUTATED 3 1 2
ST6GALNAC5 WILD-TYPE 22 10 12
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S142.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ST6GALNAC5 MUTATED 1 2 3
ST6GALNAC5 WILD-TYPE 7 17 20
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S143.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ST6GALNAC5 MUTATED 3 0 3
ST6GALNAC5 WILD-TYPE 18 9 17
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S144.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ST6GALNAC5 MUTATED 1 3 2
ST6GALNAC5 WILD-TYPE 8 19 17
'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S145.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TNFSF9 MUTATED 1 5 0
TNFSF9 WILD-TYPE 12 24 14
'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S146.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TNFSF9 MUTATED 1 3 2
TNFSF9 WILD-TYPE 17 21 12
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S147.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TNFSF9 MUTATED 2 1 0 3
TNFSF9 WILD-TYPE 16 11 9 5
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S148.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TNFSF9 MUTATED 2 2 2
TNFSF9 WILD-TYPE 2 16 23
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S149.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TNFSF9 MUTATED 4 0 2
TNFSF9 WILD-TYPE 21 11 12
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S150.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TNFSF9 MUTATED 1 3 2
TNFSF9 WILD-TYPE 7 16 21
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S151.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TNFSF9 MUTATED 1 3 2
TNFSF9 WILD-TYPE 20 6 18
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S152.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TNFSF9 MUTATED 1 2 3
TNFSF9 WILD-TYPE 8 20 16
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S153.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CDKN2A MUTATED 3 5 5
CDKN2A WILD-TYPE 10 24 9
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S154.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CDKN2A MUTATED 4 3 6
CDKN2A WILD-TYPE 14 21 8
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CDKN2A MUTATED 5 4 1 1
CDKN2A WILD-TYPE 13 8 8 7
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S156.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CDKN2A MUTATED 1 5 5
CDKN2A WILD-TYPE 3 13 20
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S157.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CDKN2A MUTATED 7 4 1
CDKN2A WILD-TYPE 18 7 13
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S158.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CDKN2A MUTATED 1 5 6
CDKN2A WILD-TYPE 7 14 17
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S159.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CDKN2A MUTATED 6 2 4
CDKN2A WILD-TYPE 15 7 16
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S160.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CDKN2A MUTATED 1 6 5
CDKN2A WILD-TYPE 8 16 14
'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S161.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SEH1L MUTATED 1 6 1
SEH1L WILD-TYPE 12 23 13
'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S162.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SEH1L MUTATED 1 5 2
SEH1L WILD-TYPE 17 19 12
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S163.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SEH1L MUTATED 2 2 3 1
SEH1L WILD-TYPE 16 10 6 7
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S164.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SEH1L MUTATED 1 2 5
SEH1L WILD-TYPE 3 16 20
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S165.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SEH1L MUTATED 3 2 3
SEH1L WILD-TYPE 22 9 11
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 1

Table S166.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SEH1L MUTATED 2 5 1
SEH1L WILD-TYPE 6 14 22
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S167.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SEH1L MUTATED 1 4 3
SEH1L WILD-TYPE 20 5 17

Figure S13.  Get High-res Image Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S168.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SEH1L MUTATED 2 1 5
SEH1L WILD-TYPE 7 21 14
'SCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S169.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SCD MUTATED 1 6 1
SCD WILD-TYPE 12 23 13
'SCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S170.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SCD MUTATED 1 4 3
SCD WILD-TYPE 17 20 11
'SCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 1

Table S171.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SCD MUTATED 3 1 4 0
SCD WILD-TYPE 15 11 5 8
'SCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S172.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SCD MUTATED 0 3 5
SCD WILD-TYPE 4 15 20
'SCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S173.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SCD MUTATED 3 1 4
SCD WILD-TYPE 22 10 10
'SCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S174.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SCD MUTATED 2 3 3
SCD WILD-TYPE 6 16 20
'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S175.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SCD MUTATED 2 2 4
SCD WILD-TYPE 19 7 16
'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S176.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SCD MUTATED 3 2 3
SCD WILD-TYPE 6 20 16
'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S177.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TMC4 MUTATED 2 4 3
TMC4 WILD-TYPE 11 25 11
'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S178.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TMC4 MUTATED 5 2 2
TMC4 WILD-TYPE 13 22 12
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S179.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TMC4 MUTATED 5 2 0 1
TMC4 WILD-TYPE 13 10 9 7
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S180.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TMC4 MUTATED 1 5 2
TMC4 WILD-TYPE 3 13 23
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S181.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TMC4 MUTATED 6 2 0
TMC4 WILD-TYPE 19 9 14
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S182.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TMC4 MUTATED 0 4 4
TMC4 WILD-TYPE 8 15 19
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S183.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TMC4 MUTATED 4 2 2
TMC4 WILD-TYPE 17 7 18
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S184.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TMC4 MUTATED 0 4 4
TMC4 WILD-TYPE 9 18 15
'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MED15 MUTATED 2 5 2
MED15 WILD-TYPE 11 24 12
'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S186.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MED15 MUTATED 2 4 3
MED15 WILD-TYPE 16 20 11
'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S187.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MED15 MUTATED 5 1 2 1
MED15 WILD-TYPE 13 11 7 7
'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S188.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MED15 MUTATED 1 5 3
MED15 WILD-TYPE 3 13 22
'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S189.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MED15 MUTATED 6 1 2
MED15 WILD-TYPE 19 10 12
'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S190.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MED15 MUTATED 1 4 4
MED15 WILD-TYPE 7 15 19
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S191.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MED15 MUTATED 3 3 3
MED15 WILD-TYPE 18 6 17
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S192.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MED15 MUTATED 1 4 4
MED15 WILD-TYPE 8 18 15
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S193.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TNFRSF9 MUTATED 1 4 1
TNFRSF9 WILD-TYPE 12 25 13
'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S194.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TNFRSF9 MUTATED 1 4 1
TNFRSF9 WILD-TYPE 17 20 13
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S195.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TNFRSF9 MUTATED 1 1 2 1
TNFRSF9 WILD-TYPE 17 11 7 7
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S196.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TNFRSF9 MUTATED 0 1 4
TNFRSF9 WILD-TYPE 4 17 21
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S197.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TNFRSF9 MUTATED 2 1 3
TNFRSF9 WILD-TYPE 23 10 11
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S198.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TNFRSF9 MUTATED 2 2 2
TNFRSF9 WILD-TYPE 6 17 21
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S199.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TNFRSF9 MUTATED 2 1 3
TNFRSF9 WILD-TYPE 19 8 17
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S200.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TNFRSF9 MUTATED 2 2 2
TNFRSF9 WILD-TYPE 7 20 17
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S201.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
BRDT MUTATED 1 6 1
BRDT WILD-TYPE 12 23 13
'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S202.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
BRDT MUTATED 1 5 2
BRDT WILD-TYPE 17 19 12
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S203.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
BRDT MUTATED 2 1 3 1
BRDT WILD-TYPE 16 11 6 7
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S204.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
BRDT MUTATED 0 2 5
BRDT WILD-TYPE 4 16 20
'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S205.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
BRDT MUTATED 3 0 5
BRDT WILD-TYPE 22 11 9
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S206.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
BRDT MUTATED 2 4 2
BRDT WILD-TYPE 6 15 21
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S207.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
BRDT MUTATED 2 1 5
BRDT WILD-TYPE 19 8 15
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S208.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
BRDT MUTATED 2 2 4
BRDT WILD-TYPE 7 20 15
'CXXC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S209.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CXXC4 MUTATED 2 2 1
CXXC4 WILD-TYPE 11 27 13
'CXXC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S210.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CXXC4 MUTATED 1 3 2
CXXC4 WILD-TYPE 17 21 12
'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S211.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CXXC4 MUTATED 3 1 1 1
CXXC4 WILD-TYPE 15 11 8 7
'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S212.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CXXC4 MUTATED 1 2 3
CXXC4 WILD-TYPE 3 16 22
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S213.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CXXC4 MUTATED 4 1 1
CXXC4 WILD-TYPE 21 10 13
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S214.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CXXC4 MUTATED 1 1 4
CXXC4 WILD-TYPE 7 18 19
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S215.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CXXC4 MUTATED 3 1 2
CXXC4 WILD-TYPE 18 8 18
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S216.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CXXC4 MUTATED 1 4 1
CXXC4 WILD-TYPE 8 18 18
'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S217.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MBD3 MUTATED 1 3 2
MBD3 WILD-TYPE 12 26 12
'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S218.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MBD3 MUTATED 2 2 2
MBD3 WILD-TYPE 16 22 12
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S219.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MBD3 MUTATED 3 1 0 1
MBD3 WILD-TYPE 15 11 9 7
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S220.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MBD3 MUTATED 0 3 2
MBD3 WILD-TYPE 4 15 23
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S221.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MBD3 MUTATED 4 0 2
MBD3 WILD-TYPE 21 11 12
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S222.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MBD3 MUTATED 1 2 3
MBD3 WILD-TYPE 7 17 20
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MBD3 MUTATED 3 1 2
MBD3 WILD-TYPE 18 8 18
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S224.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MBD3 MUTATED 1 3 2
MBD3 WILD-TYPE 8 19 17
'TULP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S225.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TULP1 MUTATED 1 5 0
TULP1 WILD-TYPE 12 24 14
'TULP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S226.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TULP1 MUTATED 1 4 1
TULP1 WILD-TYPE 17 20 13
'TULP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S227.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TULP1 MUTATED 1 1 3 1
TULP1 WILD-TYPE 17 11 6 7
'TULP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S228.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TULP1 MUTATED 0 1 5
TULP1 WILD-TYPE 4 17 20
'TULP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S229.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TULP1 MUTATED 1 1 4
TULP1 WILD-TYPE 24 10 10
'TULP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S230.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TULP1 MUTATED 3 1 2
TULP1 WILD-TYPE 5 18 21
'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S231.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TULP1 MUTATED 1 1 4
TULP1 WILD-TYPE 20 8 16
'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00854 (Fisher's exact test), Q value = 1

Table S232.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TULP1 MUTATED 4 1 1
TULP1 WILD-TYPE 5 21 18

Figure S14.  Get High-res Image Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S233.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PHF13 MUTATED 1 3 0
PHF13 WILD-TYPE 12 26 14
'PHF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S234.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PHF13 MUTATED 0 4 0
PHF13 WILD-TYPE 18 20 14
'PHF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S235.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PHF13 MUTATED 0 2 1 1
PHF13 WILD-TYPE 18 10 8 7
'PHF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S236.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PHF13 MUTATED 1 0 3
PHF13 WILD-TYPE 3 18 22
'PHF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S237.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PHF13 MUTATED 1 2 1
PHF13 WILD-TYPE 24 9 13
'PHF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S238.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PHF13 MUTATED 1 2 1
PHF13 WILD-TYPE 7 17 22
'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S239.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PHF13 MUTATED 0 2 2
PHF13 WILD-TYPE 21 7 18
'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S240.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PHF13 MUTATED 1 1 2
PHF13 WILD-TYPE 8 21 17
'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S241.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
BHLHB9 MUTATED 2 1 2
BHLHB9 WILD-TYPE 11 28 12
'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S242.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
BHLHB9 MUTATED 2 0 3
BHLHB9 WILD-TYPE 16 24 11
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S243.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
BHLHB9 MUTATED 4 0 0 0
BHLHB9 WILD-TYPE 14 12 9 8
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S244.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
BHLHB9 MUTATED 0 4 0
BHLHB9 WILD-TYPE 4 14 25

Figure S15.  Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S245.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
BHLHB9 MUTATED 5 0 0
BHLHB9 WILD-TYPE 20 11 14
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 1

Table S246.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
BHLHB9 MUTATED 0 0 5
BHLHB9 WILD-TYPE 8 19 18
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 1

Table S247.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
BHLHB9 MUTATED 5 0 0
BHLHB9 WILD-TYPE 16 9 20

Figure S16.  Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S248.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
BHLHB9 MUTATED 0 5 0
BHLHB9 WILD-TYPE 9 17 19

Figure S17.  Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRDM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S249.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PRDM8 MUTATED 1 5 0
PRDM8 WILD-TYPE 12 24 14
'PRDM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S250.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PRDM8 MUTATED 1 3 2
PRDM8 WILD-TYPE 17 21 12
'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S251.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PRDM8 MUTATED 2 2 1 0
PRDM8 WILD-TYPE 16 10 8 8
'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S252.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PRDM8 MUTATED 0 2 3
PRDM8 WILD-TYPE 4 16 22
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S253.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PRDM8 MUTATED 2 3 1
PRDM8 WILD-TYPE 23 8 13
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S254.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PRDM8 MUTATED 0 5 1
PRDM8 WILD-TYPE 8 14 22
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S255.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PRDM8 MUTATED 1 2 3
PRDM8 WILD-TYPE 20 7 17
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S256.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PRDM8 MUTATED 0 1 5
PRDM8 WILD-TYPE 9 21 14
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S257.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SMAD4 MUTATED 5 4 1
SMAD4 WILD-TYPE 8 25 13
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S258.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SMAD4 MUTATED 4 1 5
SMAD4 WILD-TYPE 14 23 9

Figure S18.  Get High-res Image Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SMAD4 MUTATED 6 2 0 1
SMAD4 WILD-TYPE 12 10 9 7
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S260.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SMAD4 MUTATED 0 6 3
SMAD4 WILD-TYPE 4 12 22
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 1

Table S261.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SMAD4 MUTATED 7 2 0
SMAD4 WILD-TYPE 18 9 14
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S262.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SMAD4 MUTATED 0 3 6
SMAD4 WILD-TYPE 8 16 17
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S263.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SMAD4 MUTATED 6 2 1
SMAD4 WILD-TYPE 15 7 19
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S264.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SMAD4 MUTATED 0 6 3
SMAD4 WILD-TYPE 9 16 16
'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S265.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C14ORF43 MUTATED 1 5 1
C14ORF43 WILD-TYPE 12 24 13
'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S266.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C14ORF43 MUTATED 1 2 4
C14ORF43 WILD-TYPE 17 22 10
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S267.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C14ORF43 MUTATED 2 1 1 3
C14ORF43 WILD-TYPE 16 11 8 5
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S268.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C14ORF43 MUTATED 1 3 3
C14ORF43 WILD-TYPE 3 15 22
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S269.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C14ORF43 MUTATED 4 1 2
C14ORF43 WILD-TYPE 21 10 12
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S270.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C14ORF43 MUTATED 1 3 3
C14ORF43 WILD-TYPE 7 16 20
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S271.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C14ORF43 MUTATED 2 2 3
C14ORF43 WILD-TYPE 19 7 17
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S272.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C14ORF43 MUTATED 2 2 3
C14ORF43 WILD-TYPE 7 20 16
'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S273.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MEPCE MUTATED 1 6 0
MEPCE WILD-TYPE 12 23 14
'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S274.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MEPCE MUTATED 1 4 2
MEPCE WILD-TYPE 17 20 12
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S275.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MEPCE MUTATED 2 1 3 1
MEPCE WILD-TYPE 16 11 6 7
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S276.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MEPCE MUTATED 0 2 5
MEPCE WILD-TYPE 4 16 20
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S277.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MEPCE MUTATED 2 1 4
MEPCE WILD-TYPE 23 10 10
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S278.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MEPCE MUTATED 3 3 1
MEPCE WILD-TYPE 5 16 22
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S279.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MEPCE MUTATED 1 1 5
MEPCE WILD-TYPE 20 8 15
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S280.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MEPCE MUTATED 3 1 3
MEPCE WILD-TYPE 6 21 16
'HVCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S281.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
HVCN1 MUTATED 1 3 0
HVCN1 WILD-TYPE 12 26 14
'HVCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S282.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
HVCN1 MUTATED 1 2 1
HVCN1 WILD-TYPE 17 22 13
'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S283.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
HVCN1 MUTATED 1 0 3 0
HVCN1 WILD-TYPE 17 12 6 8

Figure S19.  Get High-res Image Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S284.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
HVCN1 MUTATED 0 1 3
HVCN1 WILD-TYPE 4 17 22
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S285.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
HVCN1 MUTATED 1 0 3
HVCN1 WILD-TYPE 24 11 11
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 1

Table S286.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
HVCN1 MUTATED 2 0 2
HVCN1 WILD-TYPE 6 19 21
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S287.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
HVCN1 MUTATED 1 0 3
HVCN1 WILD-TYPE 20 9 17
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 1

Table S288.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
HVCN1 MUTATED 3 1 0
HVCN1 WILD-TYPE 6 21 19

Figure S20.  Get High-res Image Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FOXP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S289.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FOXP2 MUTATED 2 5 1
FOXP2 WILD-TYPE 11 24 13
'FOXP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S290.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FOXP2 MUTATED 2 5 1
FOXP2 WILD-TYPE 16 19 13
'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S291.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FOXP2 MUTATED 2 1 3 1
FOXP2 WILD-TYPE 16 11 6 7
'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S292.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FOXP2 MUTATED 0 2 5
FOXP2 WILD-TYPE 4 16 20
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S293.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FOXP2 MUTATED 3 0 5
FOXP2 WILD-TYPE 22 11 9
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S294.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FOXP2 MUTATED 3 2 3
FOXP2 WILD-TYPE 5 17 20
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S295.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FOXP2 MUTATED 3 0 5
FOXP2 WILD-TYPE 18 9 15
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S296.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FOXP2 MUTATED 3 3 2
FOXP2 WILD-TYPE 6 19 17
'GRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S297.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
GRIN1 MUTATED 1 4 0
GRIN1 WILD-TYPE 12 25 14
'GRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S298.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
GRIN1 MUTATED 1 2 2
GRIN1 WILD-TYPE 17 22 12
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S299.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
GRIN1 MUTATED 2 0 3 0
GRIN1 WILD-TYPE 16 12 6 8
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S300.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
GRIN1 MUTATED 0 2 3
GRIN1 WILD-TYPE 4 16 22
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S301.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
GRIN1 MUTATED 2 0 3
GRIN1 WILD-TYPE 23 11 11
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S302.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
GRIN1 MUTATED 1 2 2
GRIN1 WILD-TYPE 7 17 21
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S303.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
GRIN1 MUTATED 1 1 3
GRIN1 WILD-TYPE 20 8 17
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S304.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
GRIN1 MUTATED 2 1 2
GRIN1 WILD-TYPE 7 21 17
'MAGEA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S305.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MAGEA10 MUTATED 0 4 0
MAGEA10 WILD-TYPE 13 25 14
'MAGEA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S306.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MAGEA10 MUTATED 0 3 1
MAGEA10 WILD-TYPE 18 21 13
'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S307.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MAGEA10 MUTATED 0 2 2 0
MAGEA10 WILD-TYPE 18 10 7 8
'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S308.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MAGEA10 MUTATED 0 0 4
MAGEA10 WILD-TYPE 4 18 21
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S309.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MAGEA10 MUTATED 0 2 2
MAGEA10 WILD-TYPE 25 9 12
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S310.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MAGEA10 MUTATED 1 2 1
MAGEA10 WILD-TYPE 7 17 22
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S311.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MAGEA10 MUTATED 0 1 3
MAGEA10 WILD-TYPE 21 8 17
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MAGEA10 MUTATED 2 0 2
MAGEA10 WILD-TYPE 7 22 17
'C16ORF79 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C16ORF79 MUTATED 1 2 1
C16ORF79 WILD-TYPE 12 27 13
'C16ORF79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S314.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C16ORF79 MUTATED 1 2 1
C16ORF79 WILD-TYPE 17 22 13
'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S315.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C16ORF79 MUTATED 2 1 1 0
C16ORF79 WILD-TYPE 16 11 8 8
'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S316.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C16ORF79 MUTATED 0 2 2
C16ORF79 WILD-TYPE 4 16 23
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S317.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C16ORF79 MUTATED 2 1 1
C16ORF79 WILD-TYPE 23 10 13
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S318.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C16ORF79 MUTATED 0 2 2
C16ORF79 WILD-TYPE 8 17 21
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S319.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C16ORF79 MUTATED 2 0 2
C16ORF79 WILD-TYPE 19 9 18
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S320.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C16ORF79 MUTATED 0 2 2
C16ORF79 WILD-TYPE 9 20 17
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S321.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ERF MUTATED 0 5 1
ERF WILD-TYPE 13 24 13
'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S322.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ERF MUTATED 0 4 2
ERF WILD-TYPE 18 20 12
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S323.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ERF MUTATED 1 1 3 0
ERF WILD-TYPE 17 11 6 8
'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S324.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ERF MUTATED 0 1 4
ERF WILD-TYPE 4 17 21
'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S325.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ERF MUTATED 2 0 4
ERF WILD-TYPE 23 11 10
'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S326.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ERF MUTATED 2 3 1
ERF WILD-TYPE 6 16 22
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S327.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ERF MUTATED 1 1 4
ERF WILD-TYPE 20 8 16
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S328.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ERF MUTATED 2 1 3
ERF WILD-TYPE 7 21 16
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S329.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
IFNGR2 MUTATED 1 3 0
IFNGR2 WILD-TYPE 12 26 14
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S330.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
IFNGR2 MUTATED 0 2 2
IFNGR2 WILD-TYPE 18 22 12
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S331.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
IFNGR2 MUTATED 1 0 1 2
IFNGR2 WILD-TYPE 17 12 8 6
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S332.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 3 17 23
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S333.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
IFNGR2 MUTATED 2 0 2
IFNGR2 WILD-TYPE 23 11 12
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S334.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 7 17 22
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S335.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 20 8 18
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S336.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 8 21 17
'OLIG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S337.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OLIG3 MUTATED 2 2 1
OLIG3 WILD-TYPE 11 27 13
'OLIG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S338.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OLIG3 MUTATED 2 1 2
OLIG3 WILD-TYPE 16 23 12
'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S339.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OLIG3 MUTATED 4 0 0 1
OLIG3 WILD-TYPE 14 12 9 7
'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S340.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OLIG3 MUTATED 1 4 0
OLIG3 WILD-TYPE 3 14 25

Figure S21.  Get High-res Image Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S341.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OLIG3 MUTATED 5 0 0
OLIG3 WILD-TYPE 20 11 14
'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S342.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OLIG3 MUTATED 0 1 4
OLIG3 WILD-TYPE 8 18 19
'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S343.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OLIG3 MUTATED 3 2 0
OLIG3 WILD-TYPE 18 7 20
'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S344.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OLIG3 MUTATED 0 4 1
OLIG3 WILD-TYPE 9 18 18
'NDEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S345.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NDEL1 MUTATED 1 3 0
NDEL1 WILD-TYPE 12 26 14
'NDEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S346.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NDEL1 MUTATED 1 2 1
NDEL1 WILD-TYPE 17 22 13
'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S347.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NDEL1 MUTATED 1 0 3 0
NDEL1 WILD-TYPE 17 12 6 8

Figure S22.  Get High-res Image Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S348.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NDEL1 MUTATED 0 1 3
NDEL1 WILD-TYPE 4 17 22
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S349.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NDEL1 MUTATED 1 0 3
NDEL1 WILD-TYPE 24 11 11
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S350.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NDEL1 MUTATED 1 1 2
NDEL1 WILD-TYPE 7 18 21
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S351.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NDEL1 MUTATED 1 0 3
NDEL1 WILD-TYPE 20 9 17
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S352.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NDEL1 MUTATED 2 1 1
NDEL1 WILD-TYPE 7 21 18
'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S353.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
EGR1 MUTATED 1 4 3
EGR1 WILD-TYPE 12 25 11
'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S354.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
EGR1 MUTATED 2 3 3
EGR1 WILD-TYPE 16 21 11
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S355.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
EGR1 MUTATED 3 2 1 0
EGR1 WILD-TYPE 15 10 8 8
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S356.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
EGR1 MUTATED 0 3 3
EGR1 WILD-TYPE 4 15 22
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S357.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
EGR1 MUTATED 4 3 1
EGR1 WILD-TYPE 21 8 13
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S358.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
EGR1 MUTATED 1 4 3
EGR1 WILD-TYPE 7 15 20
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S359.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
EGR1 MUTATED 3 3 2
EGR1 WILD-TYPE 18 6 18
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S360.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
EGR1 MUTATED 1 3 4
EGR1 WILD-TYPE 8 19 15
'CDH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S361.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CDH3 MUTATED 0 3 1
CDH3 WILD-TYPE 13 26 13
'CDH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S362.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CDH3 MUTATED 0 2 2
CDH3 WILD-TYPE 18 22 12
'CDH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CDH3 MUTATED 0 3 0 0
CDH3 WILD-TYPE 18 9 9 8

Figure S23.  Get High-res Image Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S364.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CDH3 MUTATED 0 0 3
CDH3 WILD-TYPE 4 18 22
'CDH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S365.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CDH3 MUTATED 1 3 0
CDH3 WILD-TYPE 24 8 14
'CDH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S366.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CDH3 MUTATED 0 3 1
CDH3 WILD-TYPE 8 16 22
'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S367.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CDH3 MUTATED 1 0 3
CDH3 WILD-TYPE 20 9 17
'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S368.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CDH3 MUTATED 0 1 3
CDH3 WILD-TYPE 9 21 16
'PCDHAC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S369.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PCDHAC2 MUTATED 4 3 2
PCDHAC2 WILD-TYPE 9 26 12
'PCDHAC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 1

Table S370.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PCDHAC2 MUTATED 6 1 2
PCDHAC2 WILD-TYPE 12 23 12

Figure S24.  Get High-res Image Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S371.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PCDHAC2 MUTATED 4 1 2 1
PCDHAC2 WILD-TYPE 14 11 7 7
'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S372.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PCDHAC2 MUTATED 0 5 3
PCDHAC2 WILD-TYPE 4 13 22
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S373.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PCDHAC2 MUTATED 5 1 2
PCDHAC2 WILD-TYPE 20 10 12
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PCDHAC2 MUTATED 1 3 4
PCDHAC2 WILD-TYPE 7 16 19
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S375.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PCDHAC2 MUTATED 4 2 2
PCDHAC2 WILD-TYPE 17 7 18
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PCDHAC2 MUTATED 1 4 3
PCDHAC2 WILD-TYPE 8 18 16
'ZFP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S377.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZFP36 MUTATED 0 3 1
ZFP36 WILD-TYPE 13 26 13
'ZFP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S378.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZFP36 MUTATED 0 3 1
ZFP36 WILD-TYPE 18 21 13
'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S379.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZFP36 MUTATED 0 1 2 0
ZFP36 WILD-TYPE 18 11 7 8
'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S380.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZFP36 MUTATED 0 0 3
ZFP36 WILD-TYPE 4 18 22
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S381.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZFP36 MUTATED 1 1 2
ZFP36 WILD-TYPE 24 10 12
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S382.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZFP36 MUTATED 0 3 1
ZFP36 WILD-TYPE 8 16 22
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S383.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZFP36 MUTATED 1 0 3
ZFP36 WILD-TYPE 20 9 17
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S384.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZFP36 MUTATED 0 1 3
ZFP36 WILD-TYPE 9 21 16
'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S385.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NR4A3 MUTATED 2 3 0
NR4A3 WILD-TYPE 11 26 14
'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S386.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NR4A3 MUTATED 2 0 3
NR4A3 WILD-TYPE 16 24 11
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S387.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NR4A3 MUTATED 3 1 1 0
NR4A3 WILD-TYPE 15 11 8 8
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S388.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NR4A3 MUTATED 0 3 2
NR4A3 WILD-TYPE 4 15 23
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S389.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NR4A3 MUTATED 3 1 1
NR4A3 WILD-TYPE 22 10 13
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S390.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NR4A3 MUTATED 0 2 3
NR4A3 WILD-TYPE 8 17 20
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S391.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NR4A3 MUTATED 2 1 2
NR4A3 WILD-TYPE 19 8 18
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S392.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NR4A3 MUTATED 1 2 2
NR4A3 WILD-TYPE 8 20 17
'RAB11FIP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S393.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
RAB11FIP5 MUTATED 0 3 2
RAB11FIP5 WILD-TYPE 13 26 12
'RAB11FIP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S394.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
RAB11FIP5 MUTATED 0 3 2
RAB11FIP5 WILD-TYPE 18 21 12
'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S395.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
RAB11FIP5 MUTATED 1 1 2 0
RAB11FIP5 WILD-TYPE 17 11 7 8
'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S396.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
RAB11FIP5 MUTATED 0 1 3
RAB11FIP5 WILD-TYPE 4 17 22
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S397.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
RAB11FIP5 MUTATED 2 1 2
RAB11FIP5 WILD-TYPE 23 10 12
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S398.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
RAB11FIP5 MUTATED 1 2 2
RAB11FIP5 WILD-TYPE 7 17 21
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S399.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
RAB11FIP5 MUTATED 2 0 3
RAB11FIP5 WILD-TYPE 19 9 17
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S400.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
RAB11FIP5 MUTATED 1 2 2
RAB11FIP5 WILD-TYPE 8 20 17
'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S401.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OTUD4 MUTATED 3 4 0
OTUD4 WILD-TYPE 10 25 14
'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OTUD4 MUTATED 2 3 2
OTUD4 WILD-TYPE 16 21 12
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S403.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OTUD4 MUTATED 3 1 3 0
OTUD4 WILD-TYPE 15 11 6 8
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S404.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OTUD4 MUTATED 0 3 4
OTUD4 WILD-TYPE 4 15 21
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S405.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OTUD4 MUTATED 3 1 3
OTUD4 WILD-TYPE 22 10 11
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S406.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OTUD4 MUTATED 1 3 3
OTUD4 WILD-TYPE 7 16 20
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S407.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OTUD4 MUTATED 2 1 4
OTUD4 WILD-TYPE 19 8 16
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S408.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OTUD4 MUTATED 2 2 3
OTUD4 WILD-TYPE 7 20 16
'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S409.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PPARGC1B MUTATED 1 4 1
PPARGC1B WILD-TYPE 12 25 13
'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S410.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PPARGC1B MUTATED 1 4 2
PPARGC1B WILD-TYPE 17 20 12
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S411.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PPARGC1B MUTATED 2 2 2 1
PPARGC1B WILD-TYPE 16 10 7 7
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S412.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PPARGC1B MUTATED 1 2 4
PPARGC1B WILD-TYPE 3 16 21
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S413.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PPARGC1B MUTATED 3 2 2
PPARGC1B WILD-TYPE 22 9 12
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S414.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PPARGC1B MUTATED 0 4 3
PPARGC1B WILD-TYPE 8 15 20
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 1

Table S415.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PPARGC1B MUTATED 1 3 3
PPARGC1B WILD-TYPE 20 6 17
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S416.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PPARGC1B MUTATED 1 2 4
PPARGC1B WILD-TYPE 8 20 15
'PDZD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S417.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PDZD2 MUTATED 2 6 1
PDZD2 WILD-TYPE 11 23 13
'PDZD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S418.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PDZD2 MUTATED 2 3 4
PDZD2 WILD-TYPE 16 21 10
'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S419.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PDZD2 MUTATED 2 3 3 1
PDZD2 WILD-TYPE 16 9 6 7
'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S420.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PDZD2 MUTATED 1 2 6
PDZD2 WILD-TYPE 3 16 19
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S421.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PDZD2 MUTATED 3 3 3
PDZD2 WILD-TYPE 22 8 11
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S422.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PDZD2 MUTATED 1 6 2
PDZD2 WILD-TYPE 7 13 21
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 1

Table S423.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PDZD2 MUTATED 1 3 5
PDZD2 WILD-TYPE 20 6 15
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S424.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PDZD2 MUTATED 2 1 6
PDZD2 WILD-TYPE 7 21 13
'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S425.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NPNT MUTATED 2 2 0
NPNT WILD-TYPE 11 27 14
'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S426.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NPNT MUTATED 1 2 1
NPNT WILD-TYPE 17 22 13
'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S427.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NPNT MUTATED 2 0 1 1
NPNT WILD-TYPE 16 12 8 7
'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S428.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NPNT MUTATED 0 1 3
NPNT WILD-TYPE 4 17 22
'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S429.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NPNT MUTATED 2 0 2
NPNT WILD-TYPE 23 11 12
'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S430.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NPNT MUTATED 1 1 2
NPNT WILD-TYPE 7 18 21
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S431.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NPNT MUTATED 2 0 2
NPNT WILD-TYPE 19 9 18
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S432.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NPNT MUTATED 1 2 1
NPNT WILD-TYPE 8 20 18
'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S433.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MED9 MUTATED 0 1 2
MED9 WILD-TYPE 13 28 12
'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S434.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MED9 MUTATED 0 0 3
MED9 WILD-TYPE 18 24 11

Figure S25.  Get High-res Image Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S435.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MED9 MUTATED 2 1 0
MED9 WILD-TYPE 23 10 14
'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S436.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MED9 MUTATED 0 1 2
MED9 WILD-TYPE 8 18 21
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MED9 MUTATED 2 0 1
MED9 WILD-TYPE 19 9 19
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S438.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MED9 MUTATED 0 2 1
MED9 WILD-TYPE 9 20 18
'BCL2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S439.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
BCL2L1 MUTATED 1 2 0
BCL2L1 WILD-TYPE 12 27 14
'BCL2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S440.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
BCL2L1 MUTATED 1 2 0
BCL2L1 WILD-TYPE 17 22 14
'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S441.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
BCL2L1 MUTATED 1 1 0 1
BCL2L1 WILD-TYPE 17 11 9 7
'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S442.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
BCL2L1 MUTATED 1 1 1
BCL2L1 WILD-TYPE 3 17 24
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S443.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
BCL2L1 MUTATED 2 1 0
BCL2L1 WILD-TYPE 23 10 14
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S444.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
BCL2L1 MUTATED 0 1 2
BCL2L1 WILD-TYPE 8 18 21
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S445.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
BCL2L1 MUTATED 1 1 1
BCL2L1 WILD-TYPE 20 8 19
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S446.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
BCL2L1 MUTATED 0 2 1
BCL2L1 WILD-TYPE 9 20 18
'CPLX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S447.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CPLX3 MUTATED 0 3 0
CPLX3 WILD-TYPE 13 26 14
'CPLX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S448.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CPLX3 MUTATED 0 2 1
CPLX3 WILD-TYPE 18 22 13
'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S449.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CPLX3 MUTATED 0 2 1 0
CPLX3 WILD-TYPE 18 10 8 8
'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S450.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CPLX3 MUTATED 0 0 3
CPLX3 WILD-TYPE 4 18 22
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S451.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CPLX3 MUTATED 0 2 1
CPLX3 WILD-TYPE 25 9 13
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S452.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CPLX3 MUTATED 0 3 0
CPLX3 WILD-TYPE 8 16 23
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S453.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CPLX3 MUTATED 0 0 3
CPLX3 WILD-TYPE 21 9 17
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S454.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CPLX3 MUTATED 0 0 3
CPLX3 WILD-TYPE 9 22 16
'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S455.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
IRX4 MUTATED 1 2 0
IRX4 WILD-TYPE 12 27 14
'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S456.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
IRX4 MUTATED 1 2 0
IRX4 WILD-TYPE 17 22 14
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S457.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
IRX4 MUTATED 1 0 2 0
IRX4 WILD-TYPE 17 12 7 8
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S458.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
IRX4 MUTATED 0 1 2
IRX4 WILD-TYPE 4 17 23
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S459.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
IRX4 MUTATED 1 0 2
IRX4 WILD-TYPE 24 11 12
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S460.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
IRX4 MUTATED 1 1 1
IRX4 WILD-TYPE 7 18 22
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S461.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
IRX4 MUTATED 1 0 2
IRX4 WILD-TYPE 20 9 18
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S462.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
IRX4 MUTATED 1 1 1
IRX4 WILD-TYPE 8 21 18
'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S463.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NFAT5 MUTATED 2 5 1
NFAT5 WILD-TYPE 11 24 13
'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S464.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NFAT5 MUTATED 1 4 3
NFAT5 WILD-TYPE 17 20 11
'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S465.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NFAT5 MUTATED 3 1 3 1
NFAT5 WILD-TYPE 15 11 6 7
'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S466.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NFAT5 MUTATED 1 3 4
NFAT5 WILD-TYPE 3 15 21
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S467.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NFAT5 MUTATED 4 1 3
NFAT5 WILD-TYPE 21 10 11
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S468.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NFAT5 MUTATED 0 4 4
NFAT5 WILD-TYPE 8 15 19
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S469.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NFAT5 MUTATED 3 1 4
NFAT5 WILD-TYPE 18 8 16
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S470.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NFAT5 MUTATED 1 3 4
NFAT5 WILD-TYPE 8 19 15
'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S471.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
WASF3 MUTATED 0 3 2
WASF3 WILD-TYPE 13 26 12
'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S472.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
WASF3 MUTATED 0 3 2
WASF3 WILD-TYPE 18 21 12
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S473.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
WASF3 MUTATED 1 0 1 2
WASF3 WILD-TYPE 17 12 8 6
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S474.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
WASF3 MUTATED 1 1 2
WASF3 WILD-TYPE 3 17 23
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S475.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
WASF3 MUTATED 3 0 2
WASF3 WILD-TYPE 22 11 12
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S476.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
WASF3 MUTATED 1 1 3
WASF3 WILD-TYPE 7 18 20
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S477.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
WASF3 MUTATED 2 1 2
WASF3 WILD-TYPE 19 8 18
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S478.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
WASF3 MUTATED 1 3 1
WASF3 WILD-TYPE 8 19 18
'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S479.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ABCC2 MUTATED 1 5 0
ABCC2 WILD-TYPE 12 24 14
'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S480.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ABCC2 MUTATED 0 4 2
ABCC2 WILD-TYPE 18 20 12
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S481.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ABCC2 MUTATED 2 1 3 0
ABCC2 WILD-TYPE 16 11 6 8
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S482.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ABCC2 MUTATED 0 1 5
ABCC2 WILD-TYPE 4 17 20
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S483.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ABCC2 MUTATED 2 1 3
ABCC2 WILD-TYPE 23 10 11
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S484.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ABCC2 MUTATED 2 3 1
ABCC2 WILD-TYPE 6 16 22
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S485.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ABCC2 MUTATED 1 1 4
ABCC2 WILD-TYPE 20 8 16
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S486.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ABCC2 MUTATED 2 1 3
ABCC2 WILD-TYPE 7 21 16
'ATP13A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S487.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 13 27 12
'ATP13A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S488.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 18 22 12
'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S489.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ATP13A3 MUTATED 1 1 1 0
ATP13A3 WILD-TYPE 17 11 8 8
'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S490.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ATP13A3 MUTATED 0 1 2
ATP13A3 WILD-TYPE 4 17 23
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S491.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ATP13A3 MUTATED 2 1 1
ATP13A3 WILD-TYPE 23 10 13
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S492.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 8 17 21
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S493.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ATP13A3 MUTATED 2 1 1
ATP13A3 WILD-TYPE 19 8 19
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S494.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 9 20 17
'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S495.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ARHGAP18 MUTATED 0 3 0
ARHGAP18 WILD-TYPE 13 26 14
'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S496.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ARHGAP18 MUTATED 0 3 1
ARHGAP18 WILD-TYPE 18 21 13
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 1

Table S497.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ARHGAP18 MUTATED 0 3 1 0
ARHGAP18 WILD-TYPE 18 9 8 8
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S498.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ARHGAP18 MUTATED 0 0 4
ARHGAP18 WILD-TYPE 4 18 21
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S499.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ARHGAP18 MUTATED 0 2 2
ARHGAP18 WILD-TYPE 25 9 12
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S500.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ARHGAP18 MUTATED 0 3 1
ARHGAP18 WILD-TYPE 8 16 22
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S501.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ARHGAP18 MUTATED 0 1 3
ARHGAP18 WILD-TYPE 21 8 17
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S502.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ARHGAP18 MUTATED 1 0 3
ARHGAP18 WILD-TYPE 8 22 16
'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 13 27 13
'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S504.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 18 22 13
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S505.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CIR1 MUTATED 1 2 0
CIR1 WILD-TYPE 24 9 14
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S506.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 8 17 22
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S507.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CIR1 MUTATED 1 1 1
CIR1 WILD-TYPE 20 8 19
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S508.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CIR1 MUTATED 0 1 2
CIR1 WILD-TYPE 9 21 17
'KIAA0020 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S509.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
KIAA0020 MUTATED 0 3 1
KIAA0020 WILD-TYPE 13 26 13
'KIAA0020 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S510.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
KIAA0020 MUTATED 0 2 2
KIAA0020 WILD-TYPE 18 22 12
'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S511.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
KIAA0020 MUTATED 0 1 2 0
KIAA0020 WILD-TYPE 18 11 7 8
'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S512.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
KIAA0020 MUTATED 0 0 3
KIAA0020 WILD-TYPE 4 18 22
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S513.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
KIAA0020 MUTATED 1 1 2
KIAA0020 WILD-TYPE 24 10 12
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S514.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
KIAA0020 MUTATED 0 2 2
KIAA0020 WILD-TYPE 8 17 21
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S515.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
KIAA0020 MUTATED 1 0 3
KIAA0020 WILD-TYPE 20 9 17
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S516.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
KIAA0020 MUTATED 1 1 2
KIAA0020 WILD-TYPE 8 21 17
'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S517.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZNF608 MUTATED 0 6 0
ZNF608 WILD-TYPE 13 23 14
'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S518.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZNF608 MUTATED 0 3 3
ZNF608 WILD-TYPE 18 21 11
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S519.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZNF608 MUTATED 1 2 2 1
ZNF608 WILD-TYPE 17 10 7 7
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S520.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZNF608 MUTATED 0 1 5
ZNF608 WILD-TYPE 4 17 20
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S521.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZNF608 MUTATED 1 2 3
ZNF608 WILD-TYPE 24 9 11
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S522.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZNF608 MUTATED 2 3 1
ZNF608 WILD-TYPE 6 16 22
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S523.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZNF608 MUTATED 0 2 4
ZNF608 WILD-TYPE 21 7 16

Figure S26.  Get High-res Image Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 1

Table S524.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZNF608 MUTATED 3 0 3
ZNF608 WILD-TYPE 6 22 16

Figure S27.  Get High-res Image Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NEDD4L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NEDD4L MUTATED 1 4 1
NEDD4L WILD-TYPE 12 25 13
'NEDD4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S526.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NEDD4L MUTATED 1 2 3
NEDD4L WILD-TYPE 17 22 11
'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S527.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NEDD4L MUTATED 3 2 1 0
NEDD4L WILD-TYPE 15 10 8 8
'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S528.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NEDD4L MUTATED 0 3 3
NEDD4L WILD-TYPE 4 15 22
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S529.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NEDD4L MUTATED 3 2 1
NEDD4L WILD-TYPE 22 9 13
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S530.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NEDD4L MUTATED 0 4 2
NEDD4L WILD-TYPE 8 15 21
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S531.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NEDD4L MUTATED 2 1 3
NEDD4L WILD-TYPE 19 8 17
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S532.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NEDD4L MUTATED 0 2 4
NEDD4L WILD-TYPE 9 20 15
'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S533.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
THBS4 MUTATED 0 5 1
THBS4 WILD-TYPE 13 24 13
'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S534.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
THBS4 MUTATED 0 3 3
THBS4 WILD-TYPE 18 21 11
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S535.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
THBS4 MUTATED 1 1 3 0
THBS4 WILD-TYPE 17 11 6 8
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S536.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
THBS4 MUTATED 0 1 4
THBS4 WILD-TYPE 4 17 21
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S537.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
THBS4 MUTATED 2 1 3
THBS4 WILD-TYPE 23 10 11
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S538.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
THBS4 MUTATED 1 3 2
THBS4 WILD-TYPE 7 16 21
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S539.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
THBS4 MUTATED 1 2 3
THBS4 WILD-TYPE 20 7 17
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S540.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
THBS4 MUTATED 2 1 3
THBS4 WILD-TYPE 7 21 16
'MMRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MMRN1 MUTATED 1 4 1
MMRN1 WILD-TYPE 12 25 13
'MMRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S542.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MMRN1 MUTATED 1 3 2
MMRN1 WILD-TYPE 17 21 12
'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S543.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MMRN1 MUTATED 2 2 1 0
MMRN1 WILD-TYPE 16 10 8 8
'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S544.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MMRN1 MUTATED 0 2 3
MMRN1 WILD-TYPE 4 16 22
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S545.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MMRN1 MUTATED 3 2 1
MMRN1 WILD-TYPE 22 9 13
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S546.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MMRN1 MUTATED 1 3 2
MMRN1 WILD-TYPE 7 16 21
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S547.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MMRN1 MUTATED 2 2 2
MMRN1 WILD-TYPE 19 7 18
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S548.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MMRN1 MUTATED 1 2 3
MMRN1 WILD-TYPE 8 20 16
'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S549.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
GPR25 MUTATED 0 3 0
GPR25 WILD-TYPE 13 26 14
'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S550.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
GPR25 MUTATED 0 2 1
GPR25 WILD-TYPE 18 22 13
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S551.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
GPR25 MUTATED 1 1 1 0
GPR25 WILD-TYPE 17 11 8 8
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
GPR25 MUTATED 0 1 2
GPR25 WILD-TYPE 4 17 23
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S553.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
GPR25 MUTATED 1 1 1
GPR25 WILD-TYPE 24 10 13
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S554.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
GPR25 MUTATED 0 3 0
GPR25 WILD-TYPE 8 16 23
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S555.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
GPR25 MUTATED 0 1 2
GPR25 WILD-TYPE 21 8 18
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S556.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
GPR25 MUTATED 0 0 3
GPR25 WILD-TYPE 9 22 16
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S557.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SORBS2 MUTATED 0 4 2
SORBS2 WILD-TYPE 13 25 12
'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S558.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SORBS2 MUTATED 0 2 4
SORBS2 WILD-TYPE 18 22 10

Figure S28.  Get High-res Image Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S559.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SORBS2 MUTATED 2 1 1 0
SORBS2 WILD-TYPE 16 11 8 8
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S560.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SORBS2 MUTATED 0 2 2
SORBS2 WILD-TYPE 4 16 23
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S561.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SORBS2 MUTATED 3 1 1
SORBS2 WILD-TYPE 22 10 13
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S562.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SORBS2 MUTATED 1 2 2
SORBS2 WILD-TYPE 7 17 21
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S563.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SORBS2 MUTATED 2 1 2
SORBS2 WILD-TYPE 19 8 18
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S564.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SORBS2 MUTATED 1 2 2
SORBS2 WILD-TYPE 8 20 17
'SULT1C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S565.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SULT1C3 MUTATED 1 1 1
SULT1C3 WILD-TYPE 12 28 13
'SULT1C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S566.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SULT1C3 MUTATED 1 0 2
SULT1C3 WILD-TYPE 17 24 12
'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S567.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SULT1C3 MUTATED 2 1 0 0
SULT1C3 WILD-TYPE 16 11 9 8
'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S568.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SULT1C3 MUTATED 0 2 1
SULT1C3 WILD-TYPE 4 16 24
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S569.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SULT1C3 MUTATED 2 1 0
SULT1C3 WILD-TYPE 23 10 14
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S570.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SULT1C3 MUTATED 0 1 2
SULT1C3 WILD-TYPE 8 18 21
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SULT1C3 MUTATED 2 0 1
SULT1C3 WILD-TYPE 19 9 19
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S572.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SULT1C3 MUTATED 0 2 1
SULT1C3 WILD-TYPE 9 20 18
'ECSIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S573.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ECSIT MUTATED 1 3 0
ECSIT WILD-TYPE 12 26 14
'ECSIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S574.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ECSIT MUTATED 1 2 1
ECSIT WILD-TYPE 17 22 13
'ECSIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S575.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ECSIT MUTATED 1 0 3 0
ECSIT WILD-TYPE 17 12 6 8

Figure S29.  Get High-res Image Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S576.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ECSIT MUTATED 0 1 3
ECSIT WILD-TYPE 4 17 22
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S577.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ECSIT MUTATED 1 0 3
ECSIT WILD-TYPE 24 11 11
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S578.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ECSIT MUTATED 1 1 2
ECSIT WILD-TYPE 7 18 21
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S579.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ECSIT MUTATED 1 0 3
ECSIT WILD-TYPE 20 9 17
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S580.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ECSIT MUTATED 2 1 1
ECSIT WILD-TYPE 7 21 18
'ZNF326 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S581.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZNF326 MUTATED 0 3 1
ZNF326 WILD-TYPE 13 26 13
'ZNF326 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S582.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZNF326 MUTATED 0 2 2
ZNF326 WILD-TYPE 18 22 12
'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S583.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZNF326 MUTATED 1 0 2 0
ZNF326 WILD-TYPE 17 12 7 8
'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S584.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZNF326 MUTATED 0 1 2
ZNF326 WILD-TYPE 4 17 23
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S585.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZNF326 MUTATED 2 0 2
ZNF326 WILD-TYPE 23 11 12
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S586.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZNF326 MUTATED 1 2 1
ZNF326 WILD-TYPE 7 17 22
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S587.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZNF326 MUTATED 1 1 2
ZNF326 WILD-TYPE 20 8 18
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S588.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZNF326 MUTATED 1 1 2
ZNF326 WILD-TYPE 8 21 17
'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C15ORF52 MUTATED 0 2 1
C15ORF52 WILD-TYPE 13 27 13
'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S590.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C15ORF52 MUTATED 0 2 1
C15ORF52 WILD-TYPE 18 22 13
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S591.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C15ORF52 MUTATED 1 1 1
C15ORF52 WILD-TYPE 24 10 13
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S592.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C15ORF52 MUTATED 1 1 1
C15ORF52 WILD-TYPE 7 18 22
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S593.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C15ORF52 MUTATED 1 0 2
C15ORF52 WILD-TYPE 20 9 18
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S594.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C15ORF52 MUTATED 1 1 1
C15ORF52 WILD-TYPE 8 21 18
'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S595.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SLC39A5 MUTATED 1 2 0
SLC39A5 WILD-TYPE 12 27 14
'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S596.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SLC39A5 MUTATED 1 2 0
SLC39A5 WILD-TYPE 17 22 14
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SLC39A5 MUTATED 1 1 1 0
SLC39A5 WILD-TYPE 17 11 8 8
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S598.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SLC39A5 MUTATED 0 1 2
SLC39A5 WILD-TYPE 4 17 23
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S599.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SLC39A5 MUTATED 1 1 1
SLC39A5 WILD-TYPE 24 10 13
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S600.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SLC39A5 MUTATED 0 2 1
SLC39A5 WILD-TYPE 8 17 22
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S601.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SLC39A5 MUTATED 1 1 1
SLC39A5 WILD-TYPE 20 8 19
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S602.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SLC39A5 MUTATED 0 1 2
SLC39A5 WILD-TYPE 9 21 17
'SLC24A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S603.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SLC24A1 MUTATED 0 4 0
SLC24A1 WILD-TYPE 13 25 14
'SLC24A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S604.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SLC24A1 MUTATED 0 3 1
SLC24A1 WILD-TYPE 18 21 13
'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S605.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SLC24A1 MUTATED 1 1 2 0
SLC24A1 WILD-TYPE 17 11 7 8
'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S606.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SLC24A1 MUTATED 0 1 3
SLC24A1 WILD-TYPE 4 17 22
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S607.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SLC24A1 MUTATED 1 1 2
SLC24A1 WILD-TYPE 24 10 12
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S608.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SLC24A1 MUTATED 1 3 0
SLC24A1 WILD-TYPE 7 16 23
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S609.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SLC24A1 MUTATED 0 1 3
SLC24A1 WILD-TYPE 21 8 17
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S610.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SLC24A1 MUTATED 1 0 3
SLC24A1 WILD-TYPE 8 22 16
'PUM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S611.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PUM2 MUTATED 1 4 0
PUM2 WILD-TYPE 12 25 14
'PUM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S612.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PUM2 MUTATED 1 2 2
PUM2 WILD-TYPE 17 22 12
'PUM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S613.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PUM2 MUTATED 2 1 2 0
PUM2 WILD-TYPE 16 11 7 8
'PUM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S614.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PUM2 MUTATED 0 2 3
PUM2 WILD-TYPE 4 16 22
'PUM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S615.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PUM2 MUTATED 2 1 2
PUM2 WILD-TYPE 23 10 12
'PUM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S616.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PUM2 MUTATED 1 2 2
PUM2 WILD-TYPE 7 17 21
'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S617.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PUM2 MUTATED 1 2 2
PUM2 WILD-TYPE 20 7 18
'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S618.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PUM2 MUTATED 2 1 2
PUM2 WILD-TYPE 7 21 17
'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S619.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SYT2 MUTATED 0 5 0
SYT2 WILD-TYPE 13 24 14
'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S620.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SYT2 MUTATED 0 5 0
SYT2 WILD-TYPE 18 19 14

Figure S30.  Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S621.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SYT2 MUTATED 0 2 2 1
SYT2 WILD-TYPE 18 10 7 7
'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S622.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SYT2 MUTATED 0 0 5
SYT2 WILD-TYPE 4 18 20
'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S623.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SYT2 MUTATED 0 2 3
SYT2 WILD-TYPE 25 9 11

Figure S31.  Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 1

Table S624.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SYT2 MUTATED 2 3 0
SYT2 WILD-TYPE 6 16 23

Figure S32.  Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S625.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SYT2 MUTATED 0 1 4
SYT2 WILD-TYPE 21 8 16
'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S626.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SYT2 MUTATED 2 0 3
SYT2 WILD-TYPE 7 22 16
'SLITRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S627.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SLITRK5 MUTATED 1 5 0
SLITRK5 WILD-TYPE 12 24 14
'SLITRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S628.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SLITRK5 MUTATED 1 3 2
SLITRK5 WILD-TYPE 17 21 12
'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S629.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SLITRK5 MUTATED 2 1 3 0
SLITRK5 WILD-TYPE 16 11 6 8
'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S630.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SLITRK5 MUTATED 0 2 4
SLITRK5 WILD-TYPE 4 16 21
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S631.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SLITRK5 MUTATED 2 1 3
SLITRK5 WILD-TYPE 23 10 11
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S632.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SLITRK5 MUTATED 1 3 2
SLITRK5 WILD-TYPE 7 16 21
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S633.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SLITRK5 MUTATED 1 2 3
SLITRK5 WILD-TYPE 20 7 17
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S634.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SLITRK5 MUTATED 2 1 3
SLITRK5 WILD-TYPE 7 21 16
'NAP1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S635.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NAP1L3 MUTATED 0 2 1
NAP1L3 WILD-TYPE 13 27 13
'NAP1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S636.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NAP1L3 MUTATED 1 2 0
NAP1L3 WILD-TYPE 17 22 14
'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S637.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NAP1L3 MUTATED 1 0 2 0
NAP1L3 WILD-TYPE 17 12 7 8
'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S638.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NAP1L3 MUTATED 0 1 2
NAP1L3 WILD-TYPE 4 17 23
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S639.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NAP1L3 MUTATED 1 0 2
NAP1L3 WILD-TYPE 24 11 12
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S640.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NAP1L3 MUTATED 1 1 1
NAP1L3 WILD-TYPE 7 18 22
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S641.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NAP1L3 MUTATED 1 0 2
NAP1L3 WILD-TYPE 20 9 18
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S642.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NAP1L3 MUTATED 1 1 1
NAP1L3 WILD-TYPE 8 21 18
'PHF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S643.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PHF14 MUTATED 1 2 0
PHF14 WILD-TYPE 12 27 14
'PHF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S644.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PHF14 MUTATED 1 2 0
PHF14 WILD-TYPE 17 22 14
'PHF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S645.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PHF14 MUTATED 1 1 1 0
PHF14 WILD-TYPE 17 11 8 8
'PHF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S646.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PHF14 MUTATED 0 1 2
PHF14 WILD-TYPE 4 17 23
'PHF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S647.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PHF14 MUTATED 1 1 1
PHF14 WILD-TYPE 24 10 13
'PHF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S648.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PHF14 MUTATED 1 1 1
PHF14 WILD-TYPE 7 18 22
'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S649.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PHF14 MUTATED 1 0 2
PHF14 WILD-TYPE 20 9 18
'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S650.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PHF14 MUTATED 1 1 1
PHF14 WILD-TYPE 8 21 18
'CCDC28B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S651.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CCDC28B MUTATED 0 4 0
CCDC28B WILD-TYPE 13 25 14
'CCDC28B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S652.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CCDC28B MUTATED 0 3 1
CCDC28B WILD-TYPE 18 21 13
'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S653.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CCDC28B MUTATED 0 0 3 1
CCDC28B WILD-TYPE 18 12 6 7

Figure S33.  Get High-res Image Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S654.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CCDC28B MUTATED 1 0 3
CCDC28B WILD-TYPE 3 18 22
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S655.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CCDC28B MUTATED 1 0 3
CCDC28B WILD-TYPE 24 11 11
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S656.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CCDC28B MUTATED 1 1 2
CCDC28B WILD-TYPE 7 18 21
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S657.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CCDC28B MUTATED 0 1 3
CCDC28B WILD-TYPE 21 8 17
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S658.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CCDC28B MUTATED 2 1 1
CCDC28B WILD-TYPE 7 21 18
'PDE12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S659.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PDE12 MUTATED 0 2 1
PDE12 WILD-TYPE 18 22 13
'PDE12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S660.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PDE12 MUTATED 1 1 1
PDE12 WILD-TYPE 24 10 13
'PDE12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S661.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PDE12 MUTATED 0 2 1
PDE12 WILD-TYPE 8 17 22
'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S662.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PDE12 MUTATED 1 0 2
PDE12 WILD-TYPE 20 9 18
'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S663.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PDE12 MUTATED 0 1 2
PDE12 WILD-TYPE 9 21 17
'FLAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S664.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FLAD1 MUTATED 0 3 0
FLAD1 WILD-TYPE 13 26 14
'FLAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S665.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FLAD1 MUTATED 0 3 0
FLAD1 WILD-TYPE 18 21 14
'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S666.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FLAD1 MUTATED 0 1 2 0
FLAD1 WILD-TYPE 18 11 7 8
'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S667.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FLAD1 MUTATED 0 0 3
FLAD1 WILD-TYPE 4 18 22
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S668.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FLAD1 MUTATED 0 1 2
FLAD1 WILD-TYPE 25 10 12
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S669.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FLAD1 MUTATED 1 2 0
FLAD1 WILD-TYPE 7 17 23
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S670.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FLAD1 MUTATED 0 0 3
FLAD1 WILD-TYPE 21 9 17
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S671.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FLAD1 MUTATED 1 0 2
FLAD1 WILD-TYPE 8 22 17
'ENG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S672.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ENG MUTATED 0 3 0
ENG WILD-TYPE 13 26 14
'ENG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S673.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ENG MUTATED 0 3 0
ENG WILD-TYPE 18 21 14
'ENG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S674.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ENG MUTATED 0 1 2 0
ENG WILD-TYPE 18 11 7 8
'ENG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S675.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ENG MUTATED 0 0 3
ENG WILD-TYPE 4 18 22
'ENG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S676.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ENG MUTATED 0 1 2
ENG WILD-TYPE 25 10 12
'ENG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S677.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ENG MUTATED 2 1 0
ENG WILD-TYPE 6 18 23

Figure S34.  Get High-res Image Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S678.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ENG MUTATED 0 1 2
ENG WILD-TYPE 21 8 18
'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S679.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ENG MUTATED 2 0 1
ENG WILD-TYPE 7 22 18

Figure S35.  Get High-res Image Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S680.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PABPC1 MUTATED 0 2 2
PABPC1 WILD-TYPE 13 27 12
'PABPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S681.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PABPC1 MUTATED 1 1 2
PABPC1 WILD-TYPE 17 23 12
'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S682.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PABPC1 MUTATED 1 1 0 1
PABPC1 WILD-TYPE 17 11 9 7
'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S683.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PABPC1 MUTATED 0 1 2
PABPC1 WILD-TYPE 4 17 23
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S684.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PABPC1 MUTATED 2 1 1
PABPC1 WILD-TYPE 23 10 13
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S685.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PABPC1 MUTATED 0 2 2
PABPC1 WILD-TYPE 8 17 21
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S686.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PABPC1 MUTATED 2 0 2
PABPC1 WILD-TYPE 19 9 18
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S687.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PABPC1 MUTATED 0 2 2
PABPC1 WILD-TYPE 9 20 17
'ATG16L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S688.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ATG16L2 MUTATED 0 2 1
ATG16L2 WILD-TYPE 13 27 13
'ATG16L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S689.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ATG16L2 MUTATED 0 1 2
ATG16L2 WILD-TYPE 18 23 12
'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S690.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ATG16L2 MUTATED 1 0 2 0
ATG16L2 WILD-TYPE 17 12 7 8
'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S691.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ATG16L2 MUTATED 0 1 2
ATG16L2 WILD-TYPE 4 17 23
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S692.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ATG16L2 MUTATED 1 0 2
ATG16L2 WILD-TYPE 24 11 12
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S693.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ATG16L2 MUTATED 1 0 2
ATG16L2 WILD-TYPE 7 19 21
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S694.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ATG16L2 MUTATED 1 0 2
ATG16L2 WILD-TYPE 20 9 18
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S695.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ATG16L2 MUTATED 2 1 0
ATG16L2 WILD-TYPE 7 21 19
'LRCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S696.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
LRCH1 MUTATED 1 5 1
LRCH1 WILD-TYPE 12 24 13
'LRCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S697.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
LRCH1 MUTATED 1 3 3
LRCH1 WILD-TYPE 17 21 11
'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S698.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
LRCH1 MUTATED 3 1 3 0
LRCH1 WILD-TYPE 15 11 6 8
'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S699.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
LRCH1 MUTATED 0 3 4
LRCH1 WILD-TYPE 4 15 21
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S700.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
LRCH1 MUTATED 3 1 3
LRCH1 WILD-TYPE 22 10 11
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S701.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
LRCH1 MUTATED 2 2 3
LRCH1 WILD-TYPE 6 17 20
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S702.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
LRCH1 MUTATED 2 1 4
LRCH1 WILD-TYPE 19 8 16
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S703.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
LRCH1 MUTATED 3 2 2
LRCH1 WILD-TYPE 6 20 17
'PLCZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S704.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PLCZ1 MUTATED 0 2 1
PLCZ1 WILD-TYPE 13 27 13
'PLCZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S705.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PLCZ1 MUTATED 0 1 2
PLCZ1 WILD-TYPE 18 23 12
'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S706.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PLCZ1 MUTATED 1 0 2 0
PLCZ1 WILD-TYPE 17 12 7 8
'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S707.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PLCZ1 MUTATED 0 1 2
PLCZ1 WILD-TYPE 4 17 23
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S708.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PLCZ1 MUTATED 1 0 2
PLCZ1 WILD-TYPE 24 11 12
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S709.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PLCZ1 MUTATED 0 1 2
PLCZ1 WILD-TYPE 8 18 21
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S710.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PLCZ1 MUTATED 1 0 2
PLCZ1 WILD-TYPE 20 9 18
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S711.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PLCZ1 MUTATED 1 1 1
PLCZ1 WILD-TYPE 8 21 18
'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S712.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TAOK2 MUTATED 1 4 1
TAOK2 WILD-TYPE 12 25 13
'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S713.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TAOK2 MUTATED 2 3 1
TAOK2 WILD-TYPE 16 21 13
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S714.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TAOK2 MUTATED 2 2 1 1
TAOK2 WILD-TYPE 16 10 8 7
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S715.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TAOK2 MUTATED 1 2 3
TAOK2 WILD-TYPE 3 16 22
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S716.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TAOK2 MUTATED 3 1 2
TAOK2 WILD-TYPE 22 10 12
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S717.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TAOK2 MUTATED 1 3 2
TAOK2 WILD-TYPE 7 16 21
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S718.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TAOK2 MUTATED 1 3 2
TAOK2 WILD-TYPE 20 6 18
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S719.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TAOK2 MUTATED 1 2 3
TAOK2 WILD-TYPE 8 20 16
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S720.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZMIZ1 MUTATED 3 3 0
ZMIZ1 WILD-TYPE 10 26 14
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S721.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZMIZ1 MUTATED 2 2 2
ZMIZ1 WILD-TYPE 16 22 12
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S722.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZMIZ1 MUTATED 3 0 1 1
ZMIZ1 WILD-TYPE 15 12 8 7
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S723.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZMIZ1 MUTATED 1 2 2
ZMIZ1 WILD-TYPE 3 16 23
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S724.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZMIZ1 MUTATED 4 1 1
ZMIZ1 WILD-TYPE 21 10 13
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S725.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZMIZ1 MUTATED 1 2 3
ZMIZ1 WILD-TYPE 7 17 20
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S726.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZMIZ1 MUTATED 3 2 1
ZMIZ1 WILD-TYPE 18 7 19
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S727.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZMIZ1 MUTATED 1 3 2
ZMIZ1 WILD-TYPE 8 19 17
'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S728.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SYT15 MUTATED 1 4 1
SYT15 WILD-TYPE 12 25 13
'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S729.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SYT15 MUTATED 1 1 4
SYT15 WILD-TYPE 17 23 10
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S730.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SYT15 MUTATED 3 2 1 0
SYT15 WILD-TYPE 15 10 8 8
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S731.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SYT15 MUTATED 0 3 3
SYT15 WILD-TYPE 4 15 22
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S732.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SYT15 MUTATED 3 1 2
SYT15 WILD-TYPE 22 10 12
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S733.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SYT15 MUTATED 0 3 3
SYT15 WILD-TYPE 8 16 20
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S734.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SYT15 MUTATED 2 1 3
SYT15 WILD-TYPE 19 8 17
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S735.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SYT15 MUTATED 1 2 3
SYT15 WILD-TYPE 8 20 16
'LRTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S736.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
LRTM1 MUTATED 0 3 0
LRTM1 WILD-TYPE 13 26 14
'LRTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S737.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
LRTM1 MUTATED 0 3 0
LRTM1 WILD-TYPE 18 21 14
'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 1

Table S738.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
LRTM1 MUTATED 0 0 0 3
LRTM1 WILD-TYPE 18 12 9 5

Figure S36.  Get High-res Image Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S739.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
LRTM1 MUTATED 1 1 1
LRTM1 WILD-TYPE 3 17 24
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S740.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
LRTM1 MUTATED 2 0 1
LRTM1 WILD-TYPE 23 11 13
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S741.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
LRTM1 MUTATED 1 0 2
LRTM1 WILD-TYPE 7 19 21
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S742.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
LRTM1 MUTATED 1 1 1
LRTM1 WILD-TYPE 20 8 19
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S743.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
LRTM1 MUTATED 1 2 0
LRTM1 WILD-TYPE 8 20 19
'TIMM50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S744.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TIMM50 MUTATED 2 2 0
TIMM50 WILD-TYPE 11 27 14
'TIMM50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S745.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TIMM50 MUTATED 1 1 2
TIMM50 WILD-TYPE 17 23 12
'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S746.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TIMM50 MUTATED 3 0 1 0
TIMM50 WILD-TYPE 15 12 8 8
'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S747.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TIMM50 MUTATED 0 2 2
TIMM50 WILD-TYPE 4 16 23
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S748.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TIMM50 MUTATED 3 0 1
TIMM50 WILD-TYPE 22 11 13
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S749.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TIMM50 MUTATED 1 1 2
TIMM50 WILD-TYPE 7 18 21
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S750.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TIMM50 MUTATED 2 1 1
TIMM50 WILD-TYPE 19 8 19
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S751.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TIMM50 MUTATED 1 2 1
TIMM50 WILD-TYPE 8 20 18
'CCNK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S752.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CCNK MUTATED 1 3 0
CCNK WILD-TYPE 12 26 14
'CCNK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CCNK MUTATED 1 2 1
CCNK WILD-TYPE 17 22 13
'CCNK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S754.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CCNK MUTATED 2 0 2 0
CCNK WILD-TYPE 16 12 7 8
'CCNK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S755.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CCNK MUTATED 0 2 2
CCNK WILD-TYPE 4 16 23
'CCNK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S756.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CCNK MUTATED 2 0 2
CCNK WILD-TYPE 23 11 12
'CCNK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S757.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CCNK MUTATED 1 2 1
CCNK WILD-TYPE 7 17 22
'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S758.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CCNK MUTATED 1 1 2
CCNK WILD-TYPE 20 8 18
'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S759.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CCNK MUTATED 1 1 2
CCNK WILD-TYPE 8 21 17
'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S760.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TTK MUTATED 0 5 0
TTK WILD-TYPE 13 24 14
'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S761.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TTK MUTATED 0 3 2
TTK WILD-TYPE 18 21 12
'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S762.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TTK MUTATED 1 1 2 1
TTK WILD-TYPE 17 11 7 7
'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S763.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TTK MUTATED 1 1 3
TTK WILD-TYPE 3 17 22
'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S764.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TTK MUTATED 2 1 2
TTK WILD-TYPE 23 10 12
'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S765.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TTK MUTATED 2 2 1
TTK WILD-TYPE 6 17 22
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S766.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TTK MUTATED 0 2 3
TTK WILD-TYPE 21 7 17
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S767.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TTK MUTATED 2 1 2
TTK WILD-TYPE 7 21 17
'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S768.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TMEM175 MUTATED 1 3 0
TMEM175 WILD-TYPE 12 26 14
'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S769.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TMEM175 MUTATED 0 3 1
TMEM175 WILD-TYPE 18 21 13
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S770.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TMEM175 MUTATED 1 2 1 0
TMEM175 WILD-TYPE 17 10 8 8
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S771.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TMEM175 MUTATED 0 1 3
TMEM175 WILD-TYPE 4 17 22
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S772.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TMEM175 MUTATED 1 2 1
TMEM175 WILD-TYPE 24 9 13
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S773.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TMEM175 MUTATED 0 4 0
TMEM175 WILD-TYPE 8 15 23

Figure S37.  Get High-res Image Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S774.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TMEM175 MUTATED 0 1 3
TMEM175 WILD-TYPE 21 8 17
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 1

Table S775.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TMEM175 MUTATED 0 0 4
TMEM175 WILD-TYPE 9 22 15

Figure S38.  Get High-res Image Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S776.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CD93 MUTATED 1 3 1
CD93 WILD-TYPE 12 26 13
'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 1

Table S777.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CD93 MUTATED 1 0 4
CD93 WILD-TYPE 17 24 10

Figure S39.  Get High-res Image Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S778.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CD93 MUTATED 3 0 1 1
CD93 WILD-TYPE 15 12 8 7
'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S779.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CD93 MUTATED 1 3 1
CD93 WILD-TYPE 3 15 24
'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S780.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CD93 MUTATED 4 0 1
CD93 WILD-TYPE 21 11 13
'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S781.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CD93 MUTATED 0 2 3
CD93 WILD-TYPE 8 17 20
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S782.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CD93 MUTATED 2 2 1
CD93 WILD-TYPE 19 7 19
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S783.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CD93 MUTATED 1 2 2
CD93 WILD-TYPE 8 20 17
'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S784.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C19ORF55 MUTATED 0 2 2
C19ORF55 WILD-TYPE 13 27 12
'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S785.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C19ORF55 MUTATED 1 0 3
C19ORF55 WILD-TYPE 17 24 11

Figure S40.  Get High-res Image Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S786.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C19ORF55 MUTATED 2 1 0 0
C19ORF55 WILD-TYPE 16 11 9 8
'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S787.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C19ORF55 MUTATED 0 2 1
C19ORF55 WILD-TYPE 4 16 24
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S788.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C19ORF55 MUTATED 3 1 0
C19ORF55 WILD-TYPE 22 10 14
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S789.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C19ORF55 MUTATED 0 2 2
C19ORF55 WILD-TYPE 8 17 21
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S790.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C19ORF55 MUTATED 2 1 1
C19ORF55 WILD-TYPE 19 8 19
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S791.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C19ORF55 MUTATED 0 2 2
C19ORF55 WILD-TYPE 9 20 17
'MRPL48 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S792.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MRPL48 MUTATED 0 2 1
MRPL48 WILD-TYPE 13 27 13
'MRPL48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S793.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MRPL48 MUTATED 0 2 1
MRPL48 WILD-TYPE 18 22 13
'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S794.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MRPL48 MUTATED 1 1 1 0
MRPL48 WILD-TYPE 17 11 8 8
'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S795.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MRPL48 MUTATED 0 1 2
MRPL48 WILD-TYPE 4 17 23
'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S796.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MRPL48 MUTATED 1 1 1
MRPL48 WILD-TYPE 24 10 13
'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S797.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MRPL48 MUTATED 0 3 0
MRPL48 WILD-TYPE 8 16 23
'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S798.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MRPL48 MUTATED 0 2 1
MRPL48 WILD-TYPE 21 7 19

Figure S41.  Get High-res Image Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S799.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MRPL48 MUTATED 0 0 3
MRPL48 WILD-TYPE 9 22 16
'PVRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S800.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PVRL1 MUTATED 1 4 0
PVRL1 WILD-TYPE 12 25 14
'PVRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S801.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PVRL1 MUTATED 1 3 1
PVRL1 WILD-TYPE 17 21 13
'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S802.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PVRL1 MUTATED 2 0 3 0
PVRL1 WILD-TYPE 16 12 6 8
'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S803.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PVRL1 MUTATED 0 2 3
PVRL1 WILD-TYPE 4 16 22
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S804.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PVRL1 MUTATED 2 0 3
PVRL1 WILD-TYPE 23 11 11
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S805.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PVRL1 MUTATED 1 3 1
PVRL1 WILD-TYPE 7 16 22
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S806.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PVRL1 MUTATED 1 1 3
PVRL1 WILD-TYPE 20 8 17
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S807.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PVRL1 MUTATED 1 1 3
PVRL1 WILD-TYPE 8 21 16
'ACIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S808.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ACIN1 MUTATED 0 2 1
ACIN1 WILD-TYPE 13 27 13
'ACIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S809.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ACIN1 MUTATED 0 1 2
ACIN1 WILD-TYPE 18 23 12
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S810.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ACIN1 MUTATED 2 1 0
ACIN1 WILD-TYPE 23 10 14
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S811.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ACIN1 MUTATED 0 2 1
ACIN1 WILD-TYPE 8 17 22
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S812.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ACIN1 MUTATED 1 1 1
ACIN1 WILD-TYPE 20 8 19
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S813.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ACIN1 MUTATED 0 1 2
ACIN1 WILD-TYPE 9 21 17
'MAML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S814.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MAML3 MUTATED 2 4 1
MAML3 WILD-TYPE 11 25 13
'MAML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S815.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MAML3 MUTATED 1 2 4
MAML3 WILD-TYPE 17 22 10
'MAML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S816.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MAML3 MUTATED 4 1 2 0
MAML3 WILD-TYPE 14 11 7 8
'MAML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S817.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MAML3 MUTATED 0 4 3
MAML3 WILD-TYPE 4 14 22
'MAML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S818.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MAML3 MUTATED 4 0 3
MAML3 WILD-TYPE 21 11 11
'MAML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S819.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MAML3 MUTATED 0 3 4
MAML3 WILD-TYPE 8 16 19
'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S820.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MAML3 MUTATED 3 1 3
MAML3 WILD-TYPE 18 8 17
'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S821.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MAML3 MUTATED 1 3 3
MAML3 WILD-TYPE 8 19 16
'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S822.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
EDC4 MUTATED 1 3 1
EDC4 WILD-TYPE 12 26 13
'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S823.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
EDC4 MUTATED 1 2 2
EDC4 WILD-TYPE 17 22 12
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S824.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
EDC4 MUTATED 2 0 0 1
EDC4 WILD-TYPE 16 12 9 7
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S825.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
EDC4 MUTATED 0 2 1
EDC4 WILD-TYPE 4 16 24
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S826.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
EDC4 MUTATED 3 1 1
EDC4 WILD-TYPE 22 10 13
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S827.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
EDC4 MUTATED 1 2 2
EDC4 WILD-TYPE 7 17 21
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S828.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
EDC4 MUTATED 2 2 1
EDC4 WILD-TYPE 19 7 19
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S829.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
EDC4 MUTATED 1 2 2
EDC4 WILD-TYPE 8 20 17
'SETD1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S830.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SETD1A MUTATED 1 2 0
SETD1A WILD-TYPE 12 27 14
'SETD1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S831.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 17 23 13
'SETD1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S832.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SETD1A MUTATED 1 1 1 0
SETD1A WILD-TYPE 17 11 8 8
'SETD1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S833.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SETD1A MUTATED 0 1 2
SETD1A WILD-TYPE 4 17 23
'SETD1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S834.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 24 10 13
'SETD1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S835.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SETD1A MUTATED 0 1 2
SETD1A WILD-TYPE 8 18 21
'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S836.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 20 8 19
'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S837.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 8 21 18
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = PAAD-TP.transferedmergedcluster.txt

  • Number of patients = 57

  • Number of significantly mutated genes = 106

  • Number of Molecular subtypes = 8

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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