stddata__2014_05_18 Samples Report

- Overview

+ Introduction

- Summary

There were 161 redactions, 2854 replicate aliquots, 23 blacklisted aliquots, and 584 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1. Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF
ACC	92	76	90	0	80	0	79	0	80	0	91
BLCA	367	215	252	112	253	0	252	0	252	127	130
BRCA	1061	991	1042	19	1044	526	1048	0	1031	408	976
CESC	257	170	192	0	211	0	196	0	200	0	39
COAD	448	438	427	69	445	153	432	0	406	331	154
COADREAD	619	609	589	104	607	222	595	0	549	461	223
DLBC	58	30	28	0	28	0	28	0	27	0	0
ESCA	185	76	103	32	165	0	70	0	72	0	0
GBM	613	582	571	0	414	540	160	565	0	214	290
HNSC	528	418	511	108	516	0	497	0	512	212	306
KICH	113	94	66	0	66	0	66	0	66	0	66
KIRC	537	508	514	0	534	72	518	0	502	454	417
KIRP	274	175	198	0	227	16	198	0	198	0	168
LAML	200	200	197	0	194	0	179	0	188	0	197
LGG	516	372	463	52	512	27	463	0	438	258	289
LIHC	291	160	199	0	237	0	200	0	200	0	202
LUAD	576	470	493	120	555	32	488	0	491	237	229
LUSC	504	412	490	0	492	154	489	0	467	195	178
MESO	87	15	37	0	37	0	36	0	26	0	0
OV	602	580	576	0	584	574	296	570	453	412	316
PAAD	147	81	91	0	91	0	85	0	85	0	91
PCPG	179	10	172	0	179	0	177	0	149	0	0
PRAD	427	248	331	115	336	0	333	0	326	164	261
READ	171	171	162	35	162	69	163	0	143	130	69
SARC	242	104	150	0	170	0	103	0	149	0	0
SKCM	470	352	384	118	385	0	371	0	353	204	343
STAD	386	323	352	107	373	0	274	0	323	264	221
THCA	503	490	494	98	496	0	494	0	495	222	402
UCEC	560	490	525	106	532	54	527	0	513	200	248
UCS	57	57	56	0	57	0	57	0	56	0	57
UVM	80	0	0	0	0	0	0	0	0	0	0
Totals	10531	8308	9166	1091	9375	2217	8279	1135	8201	4032	5740

- Results

+ Sample Heatmaps

ACC

Figure 1. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

BLCA

Figure 2. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

BRCA

Figure 3. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

CESC

Figure 4. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

COAD

Figure 5. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

COADREAD

Figure 6. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

DLBC

Figure 7. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

ESCA

Figure 8. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

GBM

Figure 9. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

HNSC

Figure 10. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

KICH

Figure 11. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

KIRC

Figure 12. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

KIRP

Figure 13. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LAML

Figure 14. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LGG

Figure 15. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LIHC

Figure 16. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LUAD

Figure 17. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

LUSC

Figure 18. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

MESO

Figure 19. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

Figure 20. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

PAAD

Figure 21. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

PCPG

Figure 22. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

PRAD

Figure 23. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

READ

Figure 24. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

SARC

Figure 25. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

SKCM

Figure 26. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

STAD

Figure 27. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

THCA

Figure 28. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

UCEC

Figure 29. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

UCS

Figure 30. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

UVM

Figure 31. Get High-res Image This figure depicts the distribution of available data on a per participant basis.

+ Filtered Samples

+ FFPE Cases

+ Additional Annotations from the DCC's Annotations Manager

+ Methods & Data

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