Mutation Analysis (MutSig vS2N)
Acute Myeloid Leukemia (Primary blood derived cancer - Peripheral blood)
22 February 2013  |  analyses__2013_02_22
Maintainer Information
Citation Information
doi:10.7908/C1571978
Maintained by Dan DiCara (Broad Institute)
Cite as Broad Institute TCGA Genome Data Analysis Center (2013): Mutation Analysis (MutSig vS2N). Broad Institute of MIT and Harvard. doi:10.7908/C1571978
- Overview
+ Introduction
- Summary
- Results
- Significantly Mutated Genes

Column Descriptions:

  • N = number of sequenced bases in this gene across the individual set

  • nnon = number of (nonsilent) mutations in this gene across the individual set

  • nnull = number of (nonsilent) null mutations in this gene across the individual set

  • nflank = number of noncoding mutations from this gene's flanking region, across the individual set

  • nsil = number of silent mutations in this gene across the individual set

  • p = p-value (overall)

  • q = q-value, False Discovery Rate (Benjamini-Hochberg procedure)

Table 1.  Get Full Table A Ranked List of Significantly Mutated Genes. Number of significant genes found: 0. Number of genes displayed: 35. Click on a gene name to display its stick figure depicting the distribution of mutations and mutation types across the chosen gene (this feature may not be available for all significant genes).

gene N nflank nsil nnon nnull p q
A1BG 20882 0 0 0 0 1 1
A1CF 42946 0 0 0 0 1 1
A2BP1 28762 0 0 0 0 1 1
A2LD1 0 0 0 0 0 1 1
A2M 93969 0 0 0 0 1 1
A2ML1 104804 0 0 0 0 1 1
A4GALT 19306 0 0 0 0 1 1
A4GNT 24822 0 0 0 0 1 1
AAAS 39400 0 0 0 0 1 1
AACS 45901 0 0 0 0 1 1
AADAC 29747 0 0 0 0 1 1
AADACL2 29747 0 0 0 0 1 1
AADACL3 25216 0 0 0 0 1 1
AADACL4 28762 0 0 0 0 1 1
AADAT 31520 0 0 0 0 1 1
AAGAB 22655 0 0 0 0 1 1
AAK1 48462 0 0 0 0 1 1
AAMP 31914 0 0 0 0 1 1
AANAT 8274 0 0 0 0 1 1
AARS 65207 0 0 0 0 1 1
AARS2 54175 0 0 0 0 1 1
AARSD1 38809 0 0 0 0 1 1
AASDH 81558 0 0 0 0 1 1
AASDHPPT 22458 0 0 0 0 1 1
AASS 66980 0 0 0 0 1 1
AATF 36642 0 0 0 0 1 1
AATK 22458 0 0 0 0 1 1
ABAT 35854 0 0 0 0 1 1
ABCA1 164889 0 0 0 0 1 1
ABCA10 124307 1 0 0 0 1 1
ABCA12 204092 0 0 0 0 1 1
ABCA13 363662 0 0 0 0 1 1
ABCA2 114260 0 0 0 0 1 1
ABCA3 106183 0 0 0 0 1 1
ABCA4 158388 0 0 0 0 1 1
+ Methods & Data
Copyright © 2013 Broad Institute TCGA GDAC as part of the TCGA Research Network. All rights reserved.
Made with Nozzle