TCGA AWG analyses for SKCM: 2013_05_02
Maintained by TCGA GDAC Team
(Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Complete Sample Count
| Tumor | BCR | Clinical | CN | LowP | Methylation | mRNA | mRNAseq | miR | miRseq | RPPA | MAF |
| SKCM | 336 | 211 | 288 | 119 | 316 | 0 | 282 | 0 | 283 | 164 | 264 |
Detailed Samples Report
Download run results with firehose_get
Example download command: firehose_get awg_skcm 2013_05_02
For More Help: firehose_get --help
Overview
Introduction
This is the analysis overview for Firehose run "02 May 2013".
Summary
Note: These results are offered to the community as an additional reference point, enabling a wide range of cancer biologists, clinical investigators, and genome and computational scientists to easily incorporate TCGA into the backdrop of ongoing research. While every effort is made to ensure that Firehose input data and algorithms are of the highest possible quality, these analyses have not been reviewed by domain experts.
A total of 315 reports are available for analysis run "02 May 2013".
A total of 315 reports are available for analysis run "02 May 2013".
Results
Cancer Types
Table 1. Click "Browse" to view reports for a cancer type of interest. If you prefer to view reports on your own computer, you may download a ZIP archive containing all reports for a cancer type by clicking "Download".
| Cancer Type | Cohort | Reports | HTML | ZIP |
|---|---|---|---|---|
| Skin Cutaneous Melanoma | SKCM-All_Metastatic | 36 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-All_Primary | 31 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-All_Samples | 35 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-BRAF_Hotspot_Mutants | 30 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-NF1_Any_Mutants | 37 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-NRAS_Hotspot_Mutants | 37 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-Regional_LN | 36 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-Regional_Metastatic | 36 | Browse | Download |
| Skin Cutaneous Melanoma | SKCM-WT | 37 | Browse | Download |
An archive containing all reports for the 02 May 2013 run is available for download. Links to archives with reports for individual cancer types are included in Table 1.
Methods & Data
Input
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Run Prefix = awg_skcm__2013_05_02
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Summary Report Date = Mon May 13 16:13:48 2013
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Protection = FALSE
Copyright © 2013
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.