PARADIGM pathway analysis of mRNASeq expression and copy number data
Liver Hepatocellular Carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression and copy number data. Broad Institute of MIT and Harvard. doi:10.7908/C11835XF
- Overview
+ Introduction
- Summary

There were 70 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
Glypican 2 network 169
FOXM1 transcription factor network 159
Plasma membrane estrogen receptor signaling 100
PDGFR-alpha signaling pathway 87
Aurora B signaling 87
Signaling events regulated by Ret tyrosine kinase 85
Signaling mediated by p38-alpha and p38-beta 85
EPO signaling pathway 77
Nongenotropic Androgen signaling 77
Ephrin A reverse signaling 74
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data