This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 69 focal events and 12 clinical features across 1062 patients, 229 significant findings detected with Q value < 0.25.
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amp_1p22.3 cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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amp_1q21.3 cnv correlated to 'PATHOLOGY_T_STAGE'.
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amp_1q44 cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_3p25.1 cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
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amp_3q26.32 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_4q13.3 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_5p15.33 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'RADIATIONS_RADIATION_REGIMENINDICATION'.
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amp_6p23 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_6q21 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_8p11.23 cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_8p11.21 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_8q24.21 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_10p15.1 cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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amp_10q22.3 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_11p13 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_11q13.3 cnv correlated to 'PATHOLOGY_T_STAGE'.
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amp_11q14.1 cnv correlated to 'PATHOLOGY_T_STAGE' and 'HISTOLOGICAL_TYPE'.
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amp_12p13.33 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'RACE', and 'ETHNICITY'.
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amp_12q15 cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_13q34 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_14q21.1 cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_15q26.3 cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_17p11.2 cnv correlated to 'RADIATIONS_RADIATION_REGIMENINDICATION'.
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amp_17q12 cnv correlated to 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_17q23.1 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'GENDER', and 'HISTOLOGICAL_TYPE'.
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amp_19p13.12 cnv correlated to 'PATHOLOGY_M_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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amp_19q12 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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amp_19q13.42 cnv correlated to 'HISTOLOGICAL_TYPE'.
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amp_20q13.2 cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'RADIATIONS_RADIATION_REGIMENINDICATION'.
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del_1p36.13 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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del_1p22.1 cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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del_2q37.3 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'RACE'.
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del_3p21.31 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_4p16.3 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_4q35.1 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_5q11.2 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_5q21.3 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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del_6p25.3 cnv correlated to 'YEARS_TO_BIRTH' and 'PATHOLOGY_T_STAGE'.
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del_6q15 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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del_6q27 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_N_STAGE', and 'RADIATIONS_RADIATION_REGIMENINDICATION'.
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del_7p22.3 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_7q36.1 cnv correlated to 'HISTOLOGICAL_TYPE'.
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del_8p23.2 cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_8p11.21 cnv correlated to 'Time to Death' and 'HISTOLOGICAL_TYPE'.
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del_9p23 cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_9p21.3 cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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del_9q21.11 cnv correlated to 'HISTOLOGICAL_TYPE' and 'RADIATIONS_RADIATION_REGIMENINDICATION'.
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del_9q34.2 cnv correlated to 'PATHOLOGY_T_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_10q23.31 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'ETHNICITY'.
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del_10q26.3 cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'ETHNICITY'.
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del_11p15.5 cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_11q13.1 cnv correlated to 'RACE'.
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del_11q23.3 cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', and 'RACE'.
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del_11q25 cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_12p13.1 cnv correlated to 'HISTOLOGICAL_TYPE'.
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del_12q23.1 cnv correlated to 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_13q14.2 cnv correlated to 'PATHOLOGY_T_STAGE' and 'HISTOLOGICAL_TYPE'.
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del_14q24.1 cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'RACE'.
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del_15q13.1 cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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del_16q24.3 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_17p12 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_17q21.31 cnv correlated to 'YEARS_TO_BIRTH', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_18q23 cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', and 'HISTOLOGICAL_TYPE'.
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del_19p13.3 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_19q13.32 cnv correlated to 'HISTOLOGICAL_TYPE' and 'RADIATIONS_RADIATION_REGIMENINDICATION'.
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del_20p13 cnv correlated to 'YEARS_TO_BIRTH' and 'HISTOLOGICAL_TYPE'.
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del_21q11.2 cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'HISTOLOGICAL_TYPE'.
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del_22q13.32 cnv correlated to 'HISTOLOGICAL_TYPE' and 'RADIATIONS_RADIATION_REGIMENINDICATION'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
NEOPLASM DISEASESTAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
HISTOLOGICAL TYPE |
RADIATIONS RADIATION REGIMENINDICATION |
NUMBER OF LYMPH NODES |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
del 1p36 13 | 441 (42%) | 621 |
0.0953 (0.3) |
0.0158 (0.0905) |
0.00163 (0.0173) |
1e-05 (0.000244) |
0.00038 (0.00552) |
0.0746 (0.261) |
0.0599 (0.232) |
0.0133 (0.0801) |
0.0498 (0.211) |
0.00136 (0.015) |
0.909 (0.979) |
0.867 (0.953) |
del 9p23 | 321 (30%) | 741 |
0.000376 (0.00552) |
0.305 (0.572) |
0.00267 (0.0246) |
0.00071 (0.00891) |
0.00056 (0.00724) |
0.0541 (0.217) |
0.0984 (0.305) |
1e-05 (0.000244) |
0.549 (0.764) |
0.0244 (0.13) |
0.354 (0.602) |
0.72 (0.867) |
del 9p21 3 | 358 (34%) | 704 |
0.0369 (0.175) |
0.41 (0.651) |
0.0144 (0.084) |
0.0023 (0.0222) |
0.00179 (0.0181) |
0.106 (0.318) |
0.0508 (0.211) |
1e-05 (0.000244) |
0.422 (0.659) |
0.046 (0.199) |
0.217 (0.466) |
0.725 (0.867) |
del 11q25 | 505 (48%) | 557 |
0.329 (0.587) |
0.035 (0.172) |
0.0243 (0.13) |
0.00327 (0.0283) |
0.0341 (0.168) |
0.662 (0.834) |
0.0307 (0.154) |
0.00444 (0.035) |
0.89 (0.967) |
0.222 (0.47) |
0.00037 (0.00552) |
0.869 (0.953) |
del 15q13 1 | 369 (35%) | 693 |
0.634 (0.823) |
0.446 (0.679) |
0.173 (0.411) |
0.00152 (0.0166) |
0.0336 (0.166) |
0.495 (0.719) |
1 (1.00) |
1e-05 (0.000244) |
0.0502 (0.211) |
0.0403 (0.183) |
0.052 (0.213) |
0.73 (0.869) |
amp 3p25 1 | 197 (19%) | 865 |
0.0427 (0.19) |
0.161 (0.394) |
0.0371 (0.175) |
0.0003 (0.00497) |
0.0253 (0.132) |
0.411 (0.651) |
0.7 (0.855) |
1e-05 (0.000244) |
0.535 (0.754) |
0.429 (0.666) |
0.497 (0.721) |
1 (1.00) |
amp 12q15 | 274 (26%) | 788 |
0.289 (0.546) |
0.264 (0.514) |
0.386 (0.632) |
0.0229 (0.125) |
0.00944 (0.0641) |
1 (1.00) |
0.00877 (0.0614) |
0.00579 (0.0436) |
0.875 (0.956) |
0.0115 (0.0747) |
0.39 (0.637) |
0.25 (0.504) |
amp 19p13 12 | 227 (21%) | 835 |
0.554 (0.766) |
0.776 (0.898) |
0.436 (0.672) |
0.46 (0.693) |
0.21 (0.461) |
0.0621 (0.234) |
0.0639 (0.236) |
0.0283 (0.145) |
0.0284 (0.145) |
0.000917 (0.0108) |
0.151 (0.389) |
1 (1.00) |
amp 20q13 2 | 540 (51%) | 522 |
0.672 (0.84) |
0.731 (0.869) |
0.193 (0.437) |
0.0024 (0.0228) |
0.00257 (0.0239) |
0.826 (0.929) |
0.0645 (0.236) |
1e-05 (0.000244) |
0.000252 (0.00427) |
0.167 (0.401) |
0.255 (0.507) |
0.323 (0.587) |
del 1p22 1 | 357 (34%) | 705 |
0.00478 (0.0374) |
0.0738 (0.261) |
0.0165 (0.0935) |
2e-05 (0.000448) |
0.00756 (0.054) |
0.485 (0.712) |
0.522 (0.743) |
0.309 (0.574) |
0.884 (0.964) |
0.00118 (0.0136) |
0.672 (0.84) |
0.156 (0.391) |
del 3p21 31 | 344 (32%) | 718 |
0.0157 (0.0901) |
0.00368 (0.0311) |
0.156 (0.391) |
1e-05 (0.000244) |
0.651 (0.83) |
0.637 (0.823) |
0.754 (0.884) |
3e-05 (0.000637) |
0.338 (0.592) |
0.319 (0.587) |
0.0121 (0.0771) |
0.725 (0.867) |
del 5q21 3 | 265 (25%) | 797 |
0.652 (0.83) |
0.000897 (0.0108) |
0.163 (0.394) |
0.00011 (0.00207) |
0.134 (0.368) |
0.617 (0.814) |
0.0751 (0.261) |
1e-05 (0.000244) |
0.202 (0.451) |
0.00288 (0.0256) |
0.0005 (0.00679) |
0.703 (0.856) |
del 14q24 1 | 346 (33%) | 716 |
0.0402 (0.183) |
0.244 (0.5) |
0.212 (0.463) |
0.00019 (0.00335) |
0.409 (0.651) |
1 (1.00) |
0.755 (0.884) |
1e-05 (0.000244) |
0.0557 (0.219) |
0.331 (0.587) |
0.00077 (0.00952) |
0.725 (0.867) |
del 21q11 2 | 212 (20%) | 850 |
0.405 (0.648) |
0.465 (0.698) |
0.00983 (0.066) |
0.0121 (0.0771) |
0.0142 (0.0836) |
0.0564 (0.22) |
0.703 (0.856) |
0.00042 (0.006) |
0.546 (0.763) |
0.188 (0.431) |
0.244 (0.5) |
0.406 (0.648) |
amp 1p22 3 | 244 (23%) | 818 |
0.938 (0.997) |
0.284 (0.538) |
0.329 (0.587) |
0.00988 (0.066) |
0.0137 (0.0818) |
0.597 (0.801) |
1 (1.00) |
0.329 (0.587) |
0.624 (0.814) |
0.00935 (0.064) |
0.045 (0.197) |
1 (1.00) |
amp 1q44 | 774 (73%) | 288 |
0.0413 (0.187) |
0.374 (0.622) |
0.109 (0.325) |
0.00393 (0.0325) |
0.258 (0.51) |
0.622 (0.814) |
1 (1.00) |
0.0128 (0.08) |
0.938 (0.997) |
0.554 (0.766) |
0.0504 (0.211) |
0.099 (0.305) |
amp 8q24 21 | 668 (63%) | 394 |
0.118 (0.337) |
0.0527 (0.213) |
0.312 (0.577) |
0.0611 (0.233) |
0.322 (0.587) |
0.493 (0.718) |
0.228 (0.477) |
1e-05 (0.000244) |
0.1 (0.308) |
0.622 (0.814) |
0.00243 (0.0229) |
0.172 (0.411) |
amp 12p13 33 | 279 (26%) | 783 |
0.827 (0.929) |
0.439 (0.674) |
0.623 (0.814) |
0.00298 (0.0262) |
0.683 (0.847) |
1 (1.00) |
0.306 (0.572) |
1e-05 (0.000244) |
0.272 (0.525) |
0.35 (0.599) |
0.0235 (0.126) |
0.0613 (0.233) |
amp 14q21 1 | 217 (20%) | 845 |
0.406 (0.648) |
0.201 (0.451) |
0.332 (0.587) |
0.0333 (0.166) |
0.0234 (0.126) |
0.42 (0.659) |
1 (1.00) |
0.009 (0.0621) |
0.732 (0.87) |
0.0104 (0.0691) |
0.568 (0.778) |
0.21 (0.461) |
amp 17q23 1 | 419 (39%) | 643 |
0.12 (0.34) |
0.414 (0.652) |
0.0355 (0.173) |
0.00043 (0.00603) |
0.3 (0.564) |
1 (1.00) |
3.33e-05 (0.000672) |
1e-05 (0.000244) |
0.778 (0.898) |
0.425 (0.663) |
0.157 (0.391) |
0.867 (0.953) |
amp 19q12 | 278 (26%) | 784 |
0.596 (0.801) |
0.58 (0.79) |
0.0177 (0.0991) |
0.619 (0.814) |
0.0376 (0.175) |
0.468 (0.699) |
0.492 (0.718) |
1e-05 (0.000244) |
0.388 (0.635) |
0.00504 (0.0386) |
0.0733 (0.26) |
1 (1.00) |
del 2q37 3 | 313 (29%) | 749 |
0.814 (0.927) |
0.696 (0.855) |
0.337 (0.591) |
0.00185 (0.0185) |
0.333 (0.587) |
0.469 (0.699) |
1 (1.00) |
1e-05 (0.000244) |
0.0493 (0.211) |
0.255 (0.507) |
0.0438 (0.194) |
0.46 (0.693) |
del 5q11 2 | 274 (26%) | 788 |
0.281 (0.537) |
3.32e-05 (0.000672) |
0.26 (0.51) |
0.00051 (0.00681) |
0.348 (0.599) |
0.619 (0.814) |
0.0758 (0.263) |
1e-05 (0.000244) |
0.581 (0.79) |
0.118 (0.337) |
0.00056 (0.00724) |
0.851 (0.946) |
del 8p23 2 | 552 (52%) | 510 |
0.0504 (0.211) |
0.591 (0.799) |
0.901 (0.974) |
0.0132 (0.0801) |
0.0943 (0.3) |
1 (1.00) |
0.55 (0.764) |
1e-05 (0.000244) |
0.836 (0.934) |
0.828 (0.929) |
0.00159 (0.0171) |
0.62 (0.814) |
del 9q34 2 | 293 (28%) | 769 |
0.777 (0.898) |
0.904 (0.975) |
0.104 (0.315) |
0.0253 (0.132) |
0.0926 (0.297) |
0.808 (0.927) |
0.013 (0.0801) |
1e-05 (0.000244) |
0.0763 (0.263) |
0.193 (0.437) |
0.0667 (0.242) |
0.352 (0.601) |
del 10q26 3 | 315 (30%) | 747 |
0.057 (0.222) |
0.557 (0.767) |
0.133 (0.368) |
0.0249 (0.131) |
0.159 (0.393) |
0.233 (0.484) |
0.522 (0.743) |
1e-05 (0.000244) |
0.327 (0.587) |
0.358 (0.603) |
0.142 (0.383) |
0.00623 (0.0465) |
del 11p15 5 | 303 (29%) | 759 |
0.0528 (0.213) |
0.899 (0.974) |
0.205 (0.453) |
0.0041 (0.0334) |
0.394 (0.641) |
0.342 (0.595) |
0.52 (0.742) |
2e-05 (0.000448) |
0.593 (0.799) |
0.869 (0.953) |
0.0173 (0.0972) |
0.265 (0.515) |
del 11q23 3 | 539 (51%) | 523 |
0.508 (0.732) |
0.261 (0.51) |
0.0992 (0.305) |
0.0399 (0.183) |
0.052 (0.213) |
0.278 (0.533) |
0.0644 (0.236) |
0.0764 (0.263) |
1 (1.00) |
0.125 (0.35) |
0.0142 (0.0836) |
1 (1.00) |
del 16q24 3 | 678 (64%) | 384 |
0.711 (0.863) |
0.000601 (0.00766) |
0.234 (0.484) |
0.102 (0.312) |
0.466 (0.698) |
0.0651 (0.238) |
1 (1.00) |
1e-05 (0.000244) |
0.615 (0.814) |
0.314 (0.58) |
0.00412 (0.0334) |
0.231 (0.482) |
del 17p12 | 638 (60%) | 424 |
0.672 (0.84) |
0.0023 (0.0222) |
0.6 (0.802) |
0.0625 (0.234) |
0.803 (0.923) |
0.656 (0.831) |
0.541 (0.761) |
0.00883 (0.0614) |
0.725 (0.867) |
0.865 (0.953) |
0.0551 (0.219) |
0.737 (0.873) |
del 18q23 | 349 (33%) | 713 |
0.0617 (0.233) |
0.259 (0.51) |
0.0673 (0.243) |
0.0194 (0.107) |
0.071 (0.255) |
0.816 (0.927) |
0.355 (0.603) |
0.0011 (0.0128) |
0.142 (0.382) |
0.605 (0.806) |
0.0797 (0.271) |
0.725 (0.867) |
del 19p13 3 | 356 (34%) | 706 |
0.178 (0.416) |
0.00331 (0.0283) |
0.935 (0.997) |
0.0422 (0.19) |
0.967 (1.00) |
0.816 (0.927) |
0.352 (0.601) |
1e-05 (0.000244) |
0.827 (0.929) |
0.162 (0.394) |
0.00134 (0.015) |
0.862 (0.953) |
amp 3q26 32 | 337 (32%) | 725 |
0.871 (0.954) |
0.411 (0.651) |
0.0984 (0.305) |
0.00012 (0.00221) |
0.34 (0.593) |
0.647 (0.828) |
0.75 (0.882) |
1e-05 (0.000244) |
0.0885 (0.288) |
0.115 (0.333) |
0.00192 (0.0189) |
0.106 (0.318) |
amp 5p15 33 | 387 (36%) | 675 |
0.202 (0.451) |
0.153 (0.389) |
0.864 (0.953) |
0.175 (0.411) |
0.0133 (0.0801) |
1 (1.00) |
0.542 (0.761) |
0.0526 (0.213) |
0.0627 (0.234) |
0.958 (1.00) |
0.238 (0.489) |
0.391 (0.637) |
amp 6p23 | 294 (28%) | 768 |
0.828 (0.929) |
0.364 (0.607) |
0.495 (0.719) |
0.00165 (0.0173) |
0.248 (0.504) |
0.808 (0.927) |
0.307 (0.572) |
1e-05 (0.000244) |
0.217 (0.466) |
0.903 (0.974) |
0.00434 (0.0349) |
0.852 (0.946) |
amp 6q21 | 198 (19%) | 864 |
0.128 (0.356) |
0.429 (0.666) |
0.0947 (0.3) |
0.00023 (0.00397) |
0.157 (0.391) |
1 (1.00) |
0.7 (0.855) |
1e-05 (0.000244) |
0.376 (0.623) |
0.037 (0.175) |
0.204 (0.453) |
1 (1.00) |
amp 8p11 23 | 406 (38%) | 656 |
0.0301 (0.153) |
0.173 (0.411) |
0.0553 (0.219) |
0.554 (0.766) |
0.0745 (0.261) |
0.112 (0.329) |
0.546 (0.763) |
0.322 (0.587) |
0.723 (0.867) |
0.00763 (0.054) |
0.625 (0.814) |
0.401 (0.646) |
amp 13q34 | 176 (17%) | 886 |
0.837 (0.934) |
0.0854 (0.283) |
0.225 (0.475) |
0.00724 (0.0526) |
0.248 (0.504) |
0.78 (0.9) |
0.228 (0.477) |
0.00079 (0.00962) |
1 (1.00) |
0.0528 (0.213) |
0.711 (0.863) |
0.826 (0.929) |
amp 15q26 3 | 193 (18%) | 869 |
0.174 (0.411) |
0.00714 (0.0526) |
0.845 (0.941) |
0.31 (0.574) |
0.911 (0.98) |
1 (1.00) |
0.122 (0.344) |
1e-05 (0.000244) |
0.421 (0.659) |
0.751 (0.882) |
0.0449 (0.197) |
0.283 (0.537) |
amp 17q12 | 329 (31%) | 733 |
0.0827 (0.276) |
0.814 (0.927) |
0.399 (0.645) |
0.0916 (0.296) |
0.0948 (0.3) |
0.485 (0.712) |
0.00514 (0.039) |
0.00034 (0.00541) |
0.263 (0.514) |
0.326 (0.587) |
0.00172 (0.0178) |
1 (1.00) |
del 4p16 3 | 333 (31%) | 729 |
0.901 (0.974) |
0.0715 (0.255) |
0.0939 (0.3) |
0.00015 (0.0027) |
0.636 (0.823) |
0.636 (0.823) |
1 (1.00) |
1e-05 (0.000244) |
0.206 (0.455) |
0.687 (0.85) |
0.0307 (0.154) |
0.594 (0.799) |
del 4q35 1 | 340 (32%) | 722 |
0.157 (0.391) |
0.454 (0.687) |
0.436 (0.672) |
0.00273 (0.0248) |
0.689 (0.851) |
0.648 (0.828) |
0.518 (0.742) |
1e-05 (0.000244) |
0.506 (0.729) |
0.745 (0.877) |
0.00762 (0.054) |
0.107 (0.318) |
del 6q15 | 353 (33%) | 709 |
0.588 (0.797) |
0.0616 (0.233) |
0.348 (0.599) |
0.323 (0.587) |
0.0375 (0.175) |
0.356 (0.603) |
1 (1.00) |
0.146 (0.388) |
0.143 (0.383) |
0.0134 (0.0801) |
0.137 (0.372) |
0.481 (0.71) |
del 6q27 | 370 (35%) | 692 |
0.088 (0.288) |
1.2e-05 (0.000284) |
0.526 (0.746) |
0.656 (0.831) |
0.0383 (0.177) |
0.821 (0.929) |
0.347 (0.599) |
0.307 (0.572) |
0.0358 (0.173) |
0.26 (0.51) |
0.642 (0.826) |
0.166 (0.399) |
del 7p22 3 | 135 (13%) | 927 |
0.983 (1.00) |
0.326 (0.587) |
0.473 (0.701) |
0.267 (0.518) |
0.0546 (0.218) |
1 (1.00) |
0.377 (0.624) |
1e-05 (0.000244) |
0.47 (0.7) |
0.0196 (0.108) |
0.759 (0.885) |
1 (1.00) |
del 10q23 31 | 315 (30%) | 747 |
0.647 (0.828) |
0.111 (0.328) |
0.256 (0.507) |
0.0123 (0.078) |
0.147 (0.388) |
1 (1.00) |
0.19 (0.434) |
0.00034 (0.00541) |
0.152 (0.389) |
0.333 (0.587) |
0.324 (0.587) |
0.0189 (0.105) |
del 12q23 1 | 197 (19%) | 865 |
1 (1.00) |
0.136 (0.372) |
0.57 (0.778) |
0.0361 (0.174) |
0.839 (0.935) |
0.399 (0.645) |
0.7 (0.855) |
0.00331 (0.0283) |
0.929 (0.996) |
0.395 (0.641) |
0.00723 (0.0526) |
0.679 (0.844) |
del 17q21 31 | 362 (34%) | 700 |
0.623 (0.814) |
0.000476 (0.00657) |
0.435 (0.672) |
0.0871 (0.287) |
0.117 (0.337) |
0.25 (0.504) |
0.349 (0.599) |
1e-05 (0.000244) |
0.716 (0.867) |
0.759 (0.885) |
0.00035 (0.00547) |
0.862 (0.953) |
amp 10p15 1 | 299 (28%) | 763 |
0.111 (0.328) |
0.69 (0.852) |
0.178 (0.416) |
0.0898 (0.292) |
0.472 (0.701) |
0.34 (0.593) |
0.737 (0.873) |
1e-05 (0.000244) |
0.192 (0.437) |
0.145 (0.388) |
6e-05 (0.00118) |
0.459 (0.693) |
amp 11q14 1 | 262 (25%) | 800 |
0.161 (0.394) |
0.214 (0.463) |
0.322 (0.587) |
0.0636 (0.236) |
0.104 (0.315) |
0.447 (0.679) |
0.152 (0.389) |
0.00383 (0.032) |
0.81 (0.927) |
0.797 (0.917) |
0.118 (0.337) |
0.251 (0.504) |
del 6p25 3 | 202 (19%) | 860 |
0.951 (1.00) |
0.0555 (0.219) |
0.33 (0.587) |
0.0256 (0.133) |
0.122 (0.344) |
1 (1.00) |
0.236 (0.486) |
0.0708 (0.255) |
0.0787 (0.269) |
0.57 (0.778) |
0.485 (0.712) |
0.405 (0.648) |
del 8p11 21 | 198 (19%) | 864 |
0.0495 (0.211) |
0.211 (0.463) |
0.739 (0.873) |
0.152 (0.389) |
0.213 (0.463) |
0.156 (0.391) |
0.233 (0.484) |
0.0128 (0.08) |
0.478 (0.707) |
0.155 (0.391) |
0.136 (0.372) |
0.832 (0.932) |
del 9q21 11 | 292 (27%) | 770 |
0.279 (0.534) |
0.932 (0.997) |
0.359 (0.603) |
0.0877 (0.288) |
0.227 (0.477) |
0.324 (0.587) |
0.0808 (0.271) |
1e-05 (0.000244) |
0.0368 (0.175) |
0.615 (0.814) |
0.162 (0.394) |
0.348 (0.599) |
del 13q14 2 | 489 (46%) | 573 |
0.15 (0.389) |
0.727 (0.868) |
0.854 (0.947) |
0.0456 (0.199) |
0.454 (0.687) |
0.511 (0.734) |
0.763 (0.887) |
1e-05 (0.000244) |
0.166 (0.399) |
0.643 (0.826) |
0.0751 (0.261) |
0.133 (0.368) |
del 19q13 32 | 212 (20%) | 850 |
0.272 (0.525) |
0.492 (0.718) |
0.413 (0.652) |
0.358 (0.603) |
0.0923 (0.297) |
0.274 (0.527) |
1 (1.00) |
1e-05 (0.000244) |
0.0154 (0.0894) |
0.971 (1.00) |
0.152 (0.389) |
0.544 (0.762) |
del 20p13 | 159 (15%) | 903 |
0.187 (0.43) |
0.061 (0.233) |
0.464 (0.698) |
0.503 (0.727) |
0.97 (1.00) |
0.117 (0.337) |
0.22 (0.47) |
3e-05 (0.000637) |
0.146 (0.388) |
0.935 (0.997) |
0.15 (0.389) |
0.639 (0.824) |
del 22q13 32 | 480 (45%) | 582 |
0.498 (0.721) |
0.44 (0.674) |
0.593 (0.799) |
0.185 (0.429) |
0.717 (0.867) |
0.278 (0.533) |
0.558 (0.767) |
0.00136 (0.015) |
0.00444 (0.035) |
0.936 (0.997) |
0.582 (0.79) |
0.618 (0.814) |
amp 1q21 3 | 771 (73%) | 291 |
0.7 (0.855) |
0.887 (0.966) |
0.147 (0.388) |
0.0109 (0.0715) |
0.441 (0.674) |
0.809 (0.927) |
0.185 (0.428) |
0.212 (0.463) |
0.486 (0.713) |
0.674 (0.84) |
0.181 (0.42) |
0.137 (0.372) |
amp 4q13 3 | 161 (15%) | 901 |
0.0835 (0.278) |
0.378 (0.625) |
0.816 (0.927) |
0.193 (0.438) |
0.635 (0.823) |
0.761 (0.887) |
0.225 (0.475) |
1e-05 (0.000244) |
0.336 (0.59) |
0.875 (0.956) |
0.163 (0.394) |
0.246 (0.502) |
amp 8p11 21 | 412 (39%) | 650 |
0.929 (0.996) |
0.158 (0.392) |
0.644 (0.826) |
0.888 (0.966) |
0.822 (0.929) |
0.37 (0.616) |
0.544 (0.762) |
0.00176 (0.018) |
0.202 (0.451) |
0.652 (0.83) |
0.194 (0.438) |
0.4 (0.646) |
amp 10q22 3 | 150 (14%) | 912 |
0.0958 (0.301) |
0.944 (1.00) |
0.35 (0.599) |
0.16 (0.394) |
0.221 (0.47) |
1 (1.00) |
0.66 (0.833) |
0.00038 (0.00552) |
0.113 (0.329) |
0.215 (0.464) |
0.151 (0.389) |
1 (1.00) |
amp 11p13 | 219 (21%) | 843 |
0.55 (0.764) |
0.359 (0.603) |
0.769 (0.892) |
0.476 (0.705) |
0.967 (1.00) |
0.419 (0.658) |
0.252 (0.504) |
1e-05 (0.000244) |
0.148 (0.388) |
0.527 (0.746) |
0.33 (0.587) |
0.679 (0.844) |
amp 11q13 3 | 390 (37%) | 672 |
0.152 (0.389) |
0.223 (0.473) |
0.382 (0.628) |
0.0427 (0.19) |
0.519 (0.742) |
0.175 (0.411) |
0.111 (0.328) |
0.253 (0.505) |
0.668 (0.839) |
0.567 (0.778) |
0.382 (0.628) |
0.73 (0.869) |
amp 17p11 2 | 147 (14%) | 915 |
0.175 (0.411) |
0.347 (0.599) |
0.6 (0.802) |
0.126 (0.352) |
0.614 (0.814) |
0.756 (0.884) |
0.186 (0.429) |
0.696 (0.855) |
0.0459 (0.199) |
0.289 (0.546) |
0.555 (0.766) |
1 (1.00) |
amp 19q13 42 | 271 (26%) | 791 |
0.514 (0.738) |
0.599 (0.802) |
0.963 (1.00) |
0.362 (0.606) |
0.633 (0.823) |
0.22 (0.47) |
0.16 (0.394) |
0.011 (0.0715) |
0.133 (0.368) |
0.115 (0.333) |
0.738 (0.873) |
0.569 (0.778) |
del 7q36 1 | 197 (19%) | 865 |
0.0982 (0.305) |
0.929 (0.996) |
0.656 (0.831) |
0.216 (0.465) |
0.307 (0.572) |
0.153 (0.389) |
1 (1.00) |
9e-05 (0.00173) |
0.658 (0.831) |
0.836 (0.934) |
0.684 (0.848) |
0.283 (0.537) |
del 11q13 1 | 238 (22%) | 824 |
0.33 (0.587) |
0.768 (0.892) |
0.434 (0.672) |
0.104 (0.315) |
0.381 (0.628) |
1 (1.00) |
0.717 (0.867) |
0.534 (0.754) |
0.741 (0.874) |
0.44 (0.674) |
0.0028 (0.0252) |
0.692 (0.853) |
del 12p13 1 | 183 (17%) | 879 |
0.442 (0.674) |
0.439 (0.674) |
0.252 (0.504) |
0.195 (0.439) |
0.955 (1.00) |
1 (1.00) |
0.415 (0.653) |
0.0049 (0.0379) |
0.361 (0.605) |
0.524 (0.745) |
0.673 (0.84) |
0.826 (0.929) |
del 12q24 31 | 205 (19%) | 857 |
0.249 (0.504) |
0.122 (0.344) |
0.892 (0.968) |
0.0804 (0.271) |
0.668 (0.839) |
1 (1.00) |
0.136 (0.372) |
0.0808 (0.271) |
1 (1.00) |
0.235 (0.485) |
0.0805 (0.271) |
0.405 (0.648) |
P value = 0.00988 (Fisher's exact test), Q value = 0.066
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 1(1P22.3) MUTATED | 43 | 153 | 35 | 11 |
AMP PEAK 1(1P22.3) WILD-TYPE | 229 | 463 | 95 | 29 |
P value = 0.0137 (Fisher's exact test), Q value = 0.082
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 1(1P22.3) MUTATED | 135 | 67 | 19 | 19 |
AMP PEAK 1(1P22.3) WILD-TYPE | 366 | 283 | 98 | 56 |
P value = 0.00935 (Wilcoxon-test), Q value = 0.064
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 1(1P22.3) MUTATED | 215 | 1.9 (4.0) |
AMP PEAK 1(1P22.3) WILD-TYPE | 682 | 2.5 (4.8) |
P value = 0.045 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 1(1P22.3) MUTATED | 0 | 9 | 51 | 162 |
AMP PEAK 1(1P22.3) WILD-TYPE | 1 | 51 | 119 | 574 |
P value = 0.0109 (Fisher's exact test), Q value = 0.071
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 2(1Q21.3) MUTATED | 180 | 456 | 97 | 35 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 92 | 160 | 33 | 5 |
P value = 0.0413 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
AMP PEAK 3(1Q44) MUTATED | 763 | 84 | 0.0 - 234.3 (23.8) |
AMP PEAK 3(1Q44) WILD-TYPE | 281 | 44 | 0.0 - 160.9 (24.8) |
P value = 0.00393 (Fisher's exact test), Q value = 0.033
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 3(1Q44) MUTATED | 176 | 467 | 95 | 33 |
AMP PEAK 3(1Q44) WILD-TYPE | 96 | 149 | 35 | 7 |
P value = 0.0128 (Fisher's exact test), Q value = 0.08
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 3(1Q44) MUTATED | 1 | 544 | 159 | 5 | 3 | 21 | 9 | 32 |
AMP PEAK 3(1Q44) WILD-TYPE | 0 | 219 | 33 | 1 | 1 | 9 | 8 | 16 |
P value = 0.0504 (Fisher's exact test), Q value = 0.21
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 3(1Q44) MUTATED | 1 | 35 | 125 | 546 |
AMP PEAK 3(1Q44) WILD-TYPE | 0 | 25 | 45 | 190 |
P value = 0.0427 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
AMP PEAK 4(3P25.1) MUTATED | 195 | 31 | 0.3 - 220.9 (24.5) |
AMP PEAK 4(3P25.1) WILD-TYPE | 849 | 97 | 0.0 - 234.3 (24.6) |
P value = 0.0371 (Fisher's exact test), Q value = 0.17
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
AMP PEAK 4(3P25.1) MUTATED | 12 | 12 | 0 | 1 | 79 | 34 | 0 | 33 | 10 | 8 | 6 | 0 | 2 |
AMP PEAK 4(3P25.1) WILD-TYPE | 77 | 69 | 8 | 2 | 274 | 211 | 2 | 117 | 19 | 55 | 14 | 1 | 11 |
P value = 3e-04 (Fisher's exact test), Q value = 0.005
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 4(3P25.1) MUTATED | 37 | 132 | 14 | 13 |
AMP PEAK 4(3P25.1) WILD-TYPE | 235 | 484 | 116 | 27 |
P value = 0.0253 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 4(3P25.1) MUTATED | 94 | 54 | 33 | 12 |
AMP PEAK 4(3P25.1) WILD-TYPE | 407 | 296 | 84 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 4(3P25.1) MUTATED | 1 | 167 | 14 | 1 | 0 | 5 | 1 | 8 |
AMP PEAK 4(3P25.1) WILD-TYPE | 0 | 596 | 178 | 5 | 4 | 25 | 16 | 40 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0022
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 5(3Q26.32) MUTATED | 65 | 224 | 30 | 17 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 207 | 392 | 100 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 5(3Q26.32) MUTATED | 1 | 291 | 15 | 5 | 3 | 6 | 1 | 14 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 0 | 472 | 177 | 1 | 1 | 24 | 16 | 34 |
P value = 0.00192 (Fisher's exact test), Q value = 0.019
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 5(3Q26.32) MUTATED | 1 | 27 | 63 | 206 |
AMP PEAK 5(3Q26.32) WILD-TYPE | 0 | 33 | 107 | 530 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 6(4Q13.3) MUTATED | 0 | 140 | 7 | 2 | 0 | 2 | 1 | 9 |
AMP PEAK 6(4Q13.3) WILD-TYPE | 1 | 623 | 185 | 4 | 4 | 28 | 16 | 39 |
P value = 0.0133 (Fisher's exact test), Q value = 0.08
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 7(5P15.33) MUTATED | 196 | 107 | 53 | 26 |
AMP PEAK 7(5P15.33) WILD-TYPE | 305 | 243 | 64 | 49 |
P value = 0.0526 (Fisher's exact test), Q value = 0.21
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 7(5P15.33) MUTATED | 1 | 293 | 60 | 2 | 3 | 9 | 2 | 16 |
AMP PEAK 7(5P15.33) WILD-TYPE | 0 | 470 | 132 | 4 | 1 | 21 | 15 | 32 |
P value = 0.0627 (Fisher's exact test), Q value = 0.23
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
AMP PEAK 7(5P15.33) MUTATED | 118 | 269 |
AMP PEAK 7(5P15.33) WILD-TYPE | 170 | 505 |
P value = 0.00165 (Fisher's exact test), Q value = 0.017
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 8(6P23) MUTATED | 53 | 195 | 33 | 12 |
AMP PEAK 8(6P23) WILD-TYPE | 219 | 421 | 97 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 8(6P23) MUTATED | 0 | 242 | 25 | 4 | 1 | 5 | 2 | 14 |
AMP PEAK 8(6P23) WILD-TYPE | 1 | 521 | 167 | 2 | 3 | 25 | 15 | 34 |
P value = 0.00434 (Fisher's exact test), Q value = 0.035
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 8(6P23) MUTATED | 0 | 15 | 65 | 185 |
AMP PEAK 8(6P23) WILD-TYPE | 1 | 45 | 105 | 551 |
P value = 0.00023 (Fisher's exact test), Q value = 0.004
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 9(6Q21) MUTATED | 32 | 141 | 21 | 4 |
AMP PEAK 9(6Q21) WILD-TYPE | 240 | 475 | 109 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 9(6Q21) MUTATED | 1 | 167 | 14 | 3 | 2 | 1 | 0 | 10 |
AMP PEAK 9(6Q21) WILD-TYPE | 0 | 596 | 178 | 3 | 2 | 29 | 17 | 38 |
P value = 0.037 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 9(6Q21) MUTATED | 169 | 2.0 (4.4) |
AMP PEAK 9(6Q21) WILD-TYPE | 728 | 2.5 (4.7) |
P value = 0.0301 (logrank test), Q value = 0.15
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
AMP PEAK 10(8P11.23) MUTATED | 400 | 62 | 0.0 - 220.9 (24.3) |
AMP PEAK 10(8P11.23) WILD-TYPE | 644 | 66 | 0.0 - 234.3 (24.8) |
P value = 0.0553 (Fisher's exact test), Q value = 0.22
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
AMP PEAK 10(8P11.23) MUTATED | 24 | 28 | 4 | 0 | 135 | 92 | 2 | 56 | 16 | 28 | 12 | 0 | 6 |
AMP PEAK 10(8P11.23) WILD-TYPE | 65 | 53 | 4 | 3 | 218 | 153 | 0 | 94 | 13 | 35 | 8 | 1 | 7 |
P value = 0.00763 (Wilcoxon-test), Q value = 0.054
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 10(8P11.23) MUTATED | 341 | 2.9 (5.3) |
AMP PEAK 10(8P11.23) WILD-TYPE | 556 | 2.1 (4.2) |
P value = 0.00176 (Fisher's exact test), Q value = 0.018
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 11(8P11.21) MUTATED | 1 | 316 | 53 | 5 | 1 | 11 | 4 | 20 |
AMP PEAK 11(8P11.21) WILD-TYPE | 0 | 447 | 139 | 1 | 3 | 19 | 13 | 28 |
P value = 0.0527 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
AMP PEAK 12(8Q24.21) MUTATED | 660 | 58.0 (13.1) |
AMP PEAK 12(8Q24.21) WILD-TYPE | 387 | 59.8 (13.3) |
P value = 0.0611 (Fisher's exact test), Q value = 0.23
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 12(8Q24.21) MUTATED | 156 | 407 | 76 | 25 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 116 | 209 | 54 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 12(8Q24.21) MUTATED | 1 | 539 | 68 | 6 | 2 | 17 | 5 | 29 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 0 | 224 | 124 | 0 | 2 | 13 | 12 | 19 |
P value = 0.00243 (Fisher's exact test), Q value = 0.023
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 12(8Q24.21) MUTATED | 1 | 41 | 123 | 432 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 0 | 19 | 47 | 304 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 13(10P15.1) MUTATED | 1 | 258 | 19 | 5 | 0 | 5 | 0 | 10 |
AMP PEAK 13(10P15.1) WILD-TYPE | 0 | 505 | 173 | 1 | 4 | 25 | 17 | 38 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0012
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 13(10P15.1) MUTATED | 1 | 14 | 71 | 184 |
AMP PEAK 13(10P15.1) WILD-TYPE | 0 | 46 | 99 | 552 |
P value = 0.00038 (Fisher's exact test), Q value = 0.0055
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 14(10Q22.3) MUTATED | 0 | 125 | 11 | 3 | 1 | 4 | 0 | 6 |
AMP PEAK 14(10Q22.3) WILD-TYPE | 1 | 638 | 181 | 3 | 3 | 26 | 17 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 15(11P13) MUTATED | 1 | 184 | 16 | 3 | 1 | 2 | 2 | 10 |
AMP PEAK 15(11P13) WILD-TYPE | 0 | 579 | 176 | 3 | 3 | 28 | 15 | 38 |
P value = 0.0427 (Fisher's exact test), Q value = 0.19
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 16(11Q13.3) MUTATED | 85 | 241 | 42 | 19 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 187 | 375 | 88 | 21 |
P value = 0.0636 (Fisher's exact test), Q value = 0.24
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 17(11Q14.1) MUTATED | 60 | 167 | 22 | 10 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 212 | 449 | 108 | 30 |
P value = 0.00383 (Fisher's exact test), Q value = 0.032
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 17(11Q14.1) MUTATED | 1 | 209 | 31 | 2 | 1 | 3 | 2 | 13 |
AMP PEAK 17(11Q14.1) WILD-TYPE | 0 | 554 | 161 | 4 | 3 | 27 | 15 | 35 |
P value = 0.00298 (Fisher's exact test), Q value = 0.026
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 18(12P13.33) MUTATED | 49 | 182 | 34 | 12 |
AMP PEAK 18(12P13.33) WILD-TYPE | 223 | 434 | 96 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 18(12P13.33) MUTATED | 1 | 227 | 27 | 4 | 0 | 10 | 1 | 9 |
AMP PEAK 18(12P13.33) WILD-TYPE | 0 | 536 | 165 | 2 | 4 | 20 | 16 | 39 |
P value = 0.0235 (Fisher's exact test), Q value = 0.13
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 18(12P13.33) MUTATED | 0 | 13 | 59 | 178 |
AMP PEAK 18(12P13.33) WILD-TYPE | 1 | 47 | 111 | 558 |
P value = 0.0613 (Fisher's exact test), Q value = 0.23
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 38 | 858 |
AMP PEAK 18(12P13.33) MUTATED | 5 | 231 |
AMP PEAK 18(12P13.33) WILD-TYPE | 33 | 627 |
P value = 0.0229 (Fisher's exact test), Q value = 0.12
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 19(12Q15) MUTATED | 55 | 173 | 30 | 15 |
AMP PEAK 19(12Q15) WILD-TYPE | 217 | 443 | 100 | 25 |
P value = 0.00944 (Fisher's exact test), Q value = 0.064
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 19(12Q15) MUTATED | 113 | 88 | 44 | 22 |
AMP PEAK 19(12Q15) WILD-TYPE | 388 | 262 | 73 | 53 |
P value = 0.00877 (Fisher's exact test), Q value = 0.061
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
AMP PEAK 19(12Q15) MUTATED | 267 | 7 |
AMP PEAK 19(12Q15) WILD-TYPE | 784 | 4 |
P value = 0.00579 (Fisher's exact test), Q value = 0.044
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 19(12Q15) MUTATED | 0 | 222 | 33 | 1 | 0 | 9 | 2 | 7 |
AMP PEAK 19(12Q15) WILD-TYPE | 1 | 541 | 159 | 5 | 4 | 21 | 15 | 41 |
P value = 0.0115 (Wilcoxon-test), Q value = 0.075
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 19(12Q15) MUTATED | 217 | 2.7 (4.6) |
AMP PEAK 19(12Q15) WILD-TYPE | 680 | 2.3 (4.7) |
P value = 0.00724 (Fisher's exact test), Q value = 0.053
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 20(13Q34) MUTATED | 30 | 122 | 17 | 6 |
AMP PEAK 20(13Q34) WILD-TYPE | 242 | 494 | 113 | 34 |
P value = 0.00079 (Fisher's exact test), Q value = 0.0096
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 20(13Q34) MUTATED | 0 | 144 | 13 | 1 | 2 | 4 | 2 | 10 |
AMP PEAK 20(13Q34) WILD-TYPE | 1 | 619 | 179 | 5 | 2 | 26 | 15 | 38 |
P value = 0.0528 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 20(13Q34) MUTATED | 152 | 1.9 (4.4) |
AMP PEAK 20(13Q34) WILD-TYPE | 745 | 2.5 (4.7) |
P value = 0.0333 (Fisher's exact test), Q value = 0.17
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 21(14Q21.1) MUTATED | 43 | 145 | 21 | 8 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 229 | 471 | 109 | 32 |
P value = 0.0234 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 21(14Q21.1) MUTATED | 86 | 73 | 32 | 21 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 415 | 277 | 85 | 54 |
P value = 0.009 (Fisher's exact test), Q value = 0.062
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 21(14Q21.1) MUTATED | 0 | 172 | 23 | 0 | 2 | 9 | 2 | 9 |
AMP PEAK 21(14Q21.1) WILD-TYPE | 1 | 591 | 169 | 6 | 2 | 21 | 15 | 39 |
P value = 0.0104 (Wilcoxon-test), Q value = 0.069
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 21(14Q21.1) MUTATED | 175 | 2.9 (4.8) |
AMP PEAK 21(14Q21.1) WILD-TYPE | 722 | 2.3 (4.6) |
P value = 0.00714 (Wilcoxon-test), Q value = 0.053
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
AMP PEAK 22(15Q26.3) MUTATED | 189 | 56.3 (12.9) |
AMP PEAK 22(15Q26.3) WILD-TYPE | 858 | 59.1 (13.2) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 22(15Q26.3) MUTATED | 0 | 166 | 11 | 3 | 0 | 4 | 3 | 5 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 1 | 597 | 181 | 3 | 4 | 26 | 14 | 43 |
P value = 0.0449 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 22(15Q26.3) MUTATED | 0 | 16 | 38 | 118 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 1 | 44 | 132 | 618 |
P value = 0.0459 (Fisher's exact test), Q value = 0.2
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
AMP PEAK 23(17P11.2) MUTATED | 50 | 97 |
AMP PEAK 23(17P11.2) WILD-TYPE | 238 | 677 |
P value = 0.00514 (Fisher's exact test), Q value = 0.039
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
AMP PEAK 24(17Q12) MUTATED | 321 | 8 |
AMP PEAK 24(17Q12) WILD-TYPE | 730 | 3 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0054
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 24(17Q12) MUTATED | 0 | 268 | 37 | 1 | 2 | 5 | 4 | 12 |
AMP PEAK 24(17Q12) WILD-TYPE | 1 | 495 | 155 | 5 | 2 | 25 | 13 | 36 |
P value = 0.00172 (Fisher's exact test), Q value = 0.018
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
AMP PEAK 24(17Q12) MUTATED | 1 | 30 | 49 | 208 |
AMP PEAK 24(17Q12) WILD-TYPE | 0 | 30 | 121 | 528 |
P value = 0.0355 (Fisher's exact test), Q value = 0.17
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
AMP PEAK 25(17Q23.1) MUTATED | 27 | 23 | 2 | 1 | 151 | 100 | 1 | 66 | 16 | 20 | 9 | 1 | 2 |
AMP PEAK 25(17Q23.1) WILD-TYPE | 62 | 58 | 6 | 2 | 202 | 145 | 1 | 84 | 13 | 43 | 11 | 0 | 11 |
P value = 0.00043 (Fisher's exact test), Q value = 0.006
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 25(17Q23.1) MUTATED | 80 | 272 | 47 | 18 |
AMP PEAK 25(17Q23.1) WILD-TYPE | 192 | 344 | 83 | 22 |
P value = 3.33e-05 (Fisher's exact test), Q value = 0.00067
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
AMP PEAK 25(17Q23.1) MUTATED | 408 | 11 |
AMP PEAK 25(17Q23.1) WILD-TYPE | 643 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 25(17Q23.1) MUTATED | 1 | 337 | 41 | 3 | 2 | 11 | 5 | 18 |
AMP PEAK 25(17Q23.1) WILD-TYPE | 0 | 426 | 151 | 3 | 2 | 19 | 12 | 30 |
P value = 0.0621 (Fisher's exact test), Q value = 0.23
nPatients | 0 | 1 |
---|---|---|
ALL | 879 | 21 |
AMP PEAK 26(19P13.12) MUTATED | 191 | 1 |
AMP PEAK 26(19P13.12) WILD-TYPE | 688 | 20 |
P value = 0.0639 (Fisher's exact test), Q value = 0.24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
AMP PEAK 26(19P13.12) MUTATED | 222 | 5 |
AMP PEAK 26(19P13.12) WILD-TYPE | 829 | 6 |
P value = 0.0283 (Fisher's exact test), Q value = 0.15
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 26(19P13.12) MUTATED | 1 | 167 | 33 | 4 | 2 | 6 | 2 | 12 |
AMP PEAK 26(19P13.12) WILD-TYPE | 0 | 596 | 159 | 2 | 2 | 24 | 15 | 36 |
P value = 0.0284 (Fisher's exact test), Q value = 0.15
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
AMP PEAK 26(19P13.12) MUTATED | 75 | 152 |
AMP PEAK 26(19P13.12) WILD-TYPE | 213 | 622 |
P value = 0.000917 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 26(19P13.12) MUTATED | 204 | 1.9 (4.5) |
AMP PEAK 26(19P13.12) WILD-TYPE | 693 | 2.5 (4.7) |
P value = 0.0177 (Fisher's exact test), Q value = 0.099
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
AMP PEAK 27(19Q12) MUTATED | 23 | 17 | 2 | 0 | 120 | 54 | 0 | 35 | 8 | 12 | 4 | 0 | 0 |
AMP PEAK 27(19Q12) WILD-TYPE | 66 | 64 | 6 | 3 | 233 | 191 | 2 | 115 | 21 | 51 | 16 | 1 | 13 |
P value = 0.0376 (Fisher's exact test), Q value = 0.18
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 27(19Q12) MUTATED | 153 | 82 | 28 | 14 |
AMP PEAK 27(19Q12) WILD-TYPE | 348 | 268 | 89 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 27(19Q12) MUTATED | 0 | 221 | 29 | 6 | 2 | 6 | 2 | 12 |
AMP PEAK 27(19Q12) WILD-TYPE | 1 | 542 | 163 | 0 | 2 | 24 | 15 | 36 |
P value = 0.00504 (Wilcoxon-test), Q value = 0.039
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
AMP PEAK 27(19Q12) MUTATED | 240 | 2.0 (4.6) |
AMP PEAK 27(19Q12) WILD-TYPE | 657 | 2.5 (4.7) |
P value = 0.011 (Fisher's exact test), Q value = 0.072
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 28(19Q13.42) MUTATED | 1 | 213 | 33 | 2 | 2 | 5 | 2 | 13 |
AMP PEAK 28(19Q13.42) WILD-TYPE | 0 | 550 | 159 | 4 | 2 | 25 | 15 | 35 |
P value = 0.0024 (Fisher's exact test), Q value = 0.023
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
AMP PEAK 29(20Q13.2) MUTATED | 118 | 341 | 56 | 22 |
AMP PEAK 29(20Q13.2) WILD-TYPE | 154 | 275 | 74 | 18 |
P value = 0.00257 (Fisher's exact test), Q value = 0.024
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
AMP PEAK 29(20Q13.2) MUTATED | 245 | 176 | 77 | 31 |
AMP PEAK 29(20Q13.2) WILD-TYPE | 256 | 174 | 40 | 44 |
P value = 0.0645 (Fisher's exact test), Q value = 0.24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
AMP PEAK 29(20Q13.2) MUTATED | 531 | 9 |
AMP PEAK 29(20Q13.2) WILD-TYPE | 520 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
AMP PEAK 29(20Q13.2) MUTATED | 1 | 446 | 53 | 1 | 3 | 12 | 1 | 23 |
AMP PEAK 29(20Q13.2) WILD-TYPE | 0 | 317 | 139 | 5 | 1 | 18 | 16 | 25 |
P value = 0.000252 (Fisher's exact test), Q value = 0.0043
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
AMP PEAK 29(20Q13.2) MUTATED | 173 | 367 |
AMP PEAK 29(20Q13.2) WILD-TYPE | 115 | 407 |
P value = 0.0158 (Wilcoxon-test), Q value = 0.09
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 1(1P36.13) MUTATED | 435 | 59.6 (13.1) |
DEL PEAK 1(1P36.13) WILD-TYPE | 612 | 58.0 (13.2) |
P value = 0.00163 (Fisher's exact test), Q value = 0.017
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 1(1P36.13) MUTATED | 28 | 22 | 1 | 1 | 137 | 112 | 1 | 72 | 18 | 31 | 12 | 0 | 5 |
DEL PEAK 1(1P36.13) WILD-TYPE | 61 | 59 | 7 | 2 | 216 | 133 | 1 | 78 | 11 | 32 | 8 | 1 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 1(1P36.13) MUTATED | 81 | 282 | 51 | 26 |
DEL PEAK 1(1P36.13) WILD-TYPE | 191 | 334 | 79 | 14 |
P value = 0.00038 (Fisher's exact test), Q value = 0.0055
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 1(1P36.13) MUTATED | 175 | 164 | 55 | 39 |
DEL PEAK 1(1P36.13) WILD-TYPE | 326 | 186 | 62 | 36 |
P value = 0.0599 (Fisher's exact test), Q value = 0.23
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
DEL PEAK 1(1P36.13) MUTATED | 433 | 8 |
DEL PEAK 1(1P36.13) WILD-TYPE | 618 | 3 |
P value = 0.0133 (Fisher's exact test), Q value = 0.08
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 1(1P36.13) MUTATED | 1 | 341 | 69 | 1 | 0 | 8 | 4 | 17 |
DEL PEAK 1(1P36.13) WILD-TYPE | 0 | 422 | 123 | 5 | 4 | 22 | 13 | 31 |
P value = 0.0498 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 1(1P36.13) MUTATED | 134 | 307 |
DEL PEAK 1(1P36.13) WILD-TYPE | 154 | 467 |
P value = 0.00136 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 1(1P36.13) MUTATED | 362 | 2.8 (5.1) |
DEL PEAK 1(1P36.13) WILD-TYPE | 535 | 2.1 (4.4) |
P value = 0.00478 (logrank test), Q value = 0.037
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 2(1P22.1) MUTATED | 351 | 53 | 0.0 - 162.1 (23.1) |
DEL PEAK 2(1P22.1) WILD-TYPE | 693 | 75 | 0.0 - 234.3 (25.0) |
P value = 0.0165 (Fisher's exact test), Q value = 0.093
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 2(1P22.1) MUTATED | 20 | 20 | 1 | 0 | 116 | 81 | 1 | 60 | 16 | 26 | 9 | 0 | 5 |
DEL PEAK 2(1P22.1) WILD-TYPE | 69 | 61 | 7 | 3 | 237 | 164 | 1 | 90 | 13 | 37 | 11 | 1 | 8 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 2(1P22.1) MUTATED | 67 | 224 | 42 | 24 |
DEL PEAK 2(1P22.1) WILD-TYPE | 205 | 392 | 88 | 16 |
P value = 0.00756 (Fisher's exact test), Q value = 0.054
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 2(1P22.1) MUTATED | 144 | 126 | 50 | 30 |
DEL PEAK 2(1P22.1) WILD-TYPE | 357 | 224 | 67 | 45 |
P value = 0.00118 (Wilcoxon-test), Q value = 0.014
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 2(1P22.1) MUTATED | 287 | 2.9 (5.3) |
DEL PEAK 2(1P22.1) WILD-TYPE | 610 | 2.1 (4.3) |
P value = 0.00185 (Fisher's exact test), Q value = 0.018
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 3(2Q37.3) MUTATED | 60 | 195 | 37 | 19 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 212 | 421 | 93 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 3(2Q37.3) MUTATED | 0 | 258 | 25 | 3 | 3 | 9 | 3 | 11 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 1 | 505 | 167 | 3 | 1 | 21 | 14 | 37 |
P value = 0.0493 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 3(2Q37.3) MUTATED | 98 | 215 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 190 | 559 |
P value = 0.0438 (Fisher's exact test), Q value = 0.19
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 3(2Q37.3) MUTATED | 0 | 25 | 54 | 197 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 1 | 35 | 116 | 539 |
P value = 0.0157 (logrank test), Q value = 0.09
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 4(3P21.31) MUTATED | 339 | 52 | 0.2 - 177.0 (23.3) |
DEL PEAK 4(3P21.31) WILD-TYPE | 705 | 76 | 0.0 - 234.3 (24.9) |
P value = 0.00368 (Wilcoxon-test), Q value = 0.031
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 4(3P21.31) MUTATED | 338 | 56.8 (13.0) |
DEL PEAK 4(3P21.31) WILD-TYPE | 709 | 59.5 (13.1) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 4(3P21.31) MUTATED | 57 | 236 | 39 | 10 |
DEL PEAK 4(3P21.31) WILD-TYPE | 215 | 380 | 91 | 30 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00064
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 4(3P21.31) MUTATED | 1 | 282 | 40 | 1 | 1 | 6 | 1 | 12 |
DEL PEAK 4(3P21.31) WILD-TYPE | 0 | 481 | 152 | 5 | 3 | 24 | 16 | 36 |
P value = 0.0121 (Fisher's exact test), Q value = 0.077
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 4(3P21.31) MUTATED | 0 | 26 | 69 | 224 |
DEL PEAK 4(3P21.31) WILD-TYPE | 1 | 34 | 101 | 512 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0027
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 5(4P16.3) MUTATED | 58 | 222 | 38 | 13 |
DEL PEAK 5(4P16.3) WILD-TYPE | 214 | 394 | 92 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 5(4P16.3) MUTATED | 1 | 276 | 31 | 4 | 2 | 6 | 0 | 13 |
DEL PEAK 5(4P16.3) WILD-TYPE | 0 | 487 | 161 | 2 | 2 | 24 | 17 | 35 |
P value = 0.0307 (Fisher's exact test), Q value = 0.15
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 5(4P16.3) MUTATED | 1 | 17 | 68 | 224 |
DEL PEAK 5(4P16.3) WILD-TYPE | 0 | 43 | 102 | 512 |
P value = 0.00273 (Fisher's exact test), Q value = 0.025
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 6(4Q35.1) MUTATED | 66 | 220 | 36 | 16 |
DEL PEAK 6(4Q35.1) WILD-TYPE | 206 | 396 | 94 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 6(4Q35.1) MUTATED | 1 | 284 | 34 | 4 | 3 | 3 | 0 | 10 |
DEL PEAK 6(4Q35.1) WILD-TYPE | 0 | 479 | 158 | 2 | 1 | 27 | 17 | 38 |
P value = 0.00762 (Fisher's exact test), Q value = 0.054
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 6(4Q35.1) MUTATED | 1 | 23 | 69 | 217 |
DEL PEAK 6(4Q35.1) WILD-TYPE | 0 | 37 | 101 | 519 |
P value = 3.32e-05 (Wilcoxon-test), Q value = 0.00067
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 7(5Q11.2) MUTATED | 271 | 55.9 (13.2) |
DEL PEAK 7(5Q11.2) WILD-TYPE | 776 | 59.6 (13.0) |
P value = 0.00051 (Fisher's exact test), Q value = 0.0068
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 7(5Q11.2) MUTATED | 58 | 184 | 19 | 12 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 214 | 432 | 111 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 7(5Q11.2) MUTATED | 1 | 239 | 11 | 5 | 0 | 5 | 1 | 11 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 0 | 524 | 181 | 1 | 4 | 25 | 16 | 37 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0072
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 7(5Q11.2) MUTATED | 1 | 20 | 62 | 170 |
DEL PEAK 7(5Q11.2) WILD-TYPE | 0 | 40 | 108 | 566 |
P value = 0.000897 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 8(5Q21.3) MUTATED | 262 | 56.4 (13.3) |
DEL PEAK 8(5Q21.3) WILD-TYPE | 785 | 59.4 (13.0) |
P value = 0.00011 (Fisher's exact test), Q value = 0.0021
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 8(5Q21.3) MUTATED | 52 | 181 | 18 | 12 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 220 | 435 | 112 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 8(5Q21.3) MUTATED | 1 | 237 | 5 | 6 | 1 | 5 | 0 | 9 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 0 | 526 | 187 | 0 | 3 | 25 | 17 | 39 |
P value = 0.00288 (Wilcoxon-test), Q value = 0.026
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 8(5Q21.3) MUTATED | 226 | 1.7 (3.7) |
DEL PEAK 8(5Q21.3) WILD-TYPE | 671 | 2.6 (4.9) |
P value = 5e-04 (Fisher's exact test), Q value = 0.0068
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 8(5Q21.3) MUTATED | 0 | 18 | 63 | 163 |
DEL PEAK 8(5Q21.3) WILD-TYPE | 1 | 42 | 107 | 573 |
P value = 0.0555 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 9(6P25.3) MUTATED | 199 | 56.9 (12.9) |
DEL PEAK 9(6P25.3) WILD-TYPE | 848 | 59.0 (13.2) |
P value = 0.0256 (Fisher's exact test), Q value = 0.13
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 9(6P25.3) MUTATED | 46 | 135 | 15 | 6 |
DEL PEAK 9(6P25.3) WILD-TYPE | 226 | 481 | 115 | 34 |
P value = 0.0616 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 10(6Q15) MUTATED | 350 | 57.5 (13.1) |
DEL PEAK 10(6Q15) WILD-TYPE | 697 | 59.2 (13.2) |
P value = 0.0375 (Fisher's exact test), Q value = 0.18
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 10(6Q15) MUTATED | 148 | 126 | 49 | 23 |
DEL PEAK 10(6Q15) WILD-TYPE | 353 | 224 | 68 | 52 |
P value = 0.0134 (Wilcoxon-test), Q value = 0.08
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 10(6Q15) MUTATED | 288 | 2.6 (4.6) |
DEL PEAK 10(6Q15) WILD-TYPE | 609 | 2.3 (4.7) |
P value = 1.2e-05 (Wilcoxon-test), Q value = 0.00028
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 11(6Q27) MUTATED | 366 | 56.1 (12.6) |
DEL PEAK 11(6Q27) WILD-TYPE | 681 | 60.0 (13.3) |
P value = 0.0383 (Fisher's exact test), Q value = 0.18
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 11(6Q27) MUTATED | 167 | 134 | 46 | 17 |
DEL PEAK 11(6Q27) WILD-TYPE | 334 | 216 | 71 | 58 |
P value = 0.0358 (Fisher's exact test), Q value = 0.17
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 11(6Q27) MUTATED | 115 | 255 |
DEL PEAK 11(6Q27) WILD-TYPE | 173 | 519 |
P value = 0.0546 (Fisher's exact test), Q value = 0.22
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 12(7P22.3) MUTATED | 74 | 35 | 18 | 5 |
DEL PEAK 12(7P22.3) WILD-TYPE | 427 | 315 | 99 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 12(7P22.3) MUTATED | 0 | 119 | 4 | 1 | 1 | 4 | 0 | 6 |
DEL PEAK 12(7P22.3) WILD-TYPE | 1 | 644 | 188 | 5 | 3 | 26 | 17 | 42 |
P value = 0.0196 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 12(7P22.3) MUTATED | 108 | 1.6 (3.5) |
DEL PEAK 12(7P22.3) WILD-TYPE | 789 | 2.5 (4.8) |
P value = 9e-05 (Fisher's exact test), Q value = 0.0017
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 13(7Q36.1) MUTATED | 0 | 164 | 15 | 0 | 0 | 7 | 0 | 11 |
DEL PEAK 13(7Q36.1) WILD-TYPE | 1 | 599 | 177 | 6 | 4 | 23 | 17 | 37 |
P value = 0.0504 (logrank test), Q value = 0.21
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 14(8P23.2) MUTATED | 545 | 81 | 0.2 - 220.9 (24.4) |
DEL PEAK 14(8P23.2) WILD-TYPE | 499 | 47 | 0.0 - 234.3 (24.8) |
P value = 0.0132 (Fisher's exact test), Q value = 0.08
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 14(8P23.2) MUTATED | 155 | 320 | 52 | 23 |
DEL PEAK 14(8P23.2) WILD-TYPE | 117 | 296 | 78 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 14(8P23.2) MUTATED | 1 | 441 | 64 | 3 | 1 | 11 | 4 | 26 |
DEL PEAK 14(8P23.2) WILD-TYPE | 0 | 322 | 128 | 3 | 3 | 19 | 13 | 22 |
P value = 0.00159 (Fisher's exact test), Q value = 0.017
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 14(8P23.2) MUTATED | 1 | 41 | 99 | 356 |
DEL PEAK 14(8P23.2) WILD-TYPE | 0 | 19 | 71 | 380 |
P value = 0.0495 (logrank test), Q value = 0.21
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 15(8P11.21) MUTATED | 195 | 26 | 0.2 - 189.0 (22.8) |
DEL PEAK 15(8P11.21) WILD-TYPE | 849 | 102 | 0.0 - 234.3 (24.9) |
P value = 0.0128 (Fisher's exact test), Q value = 0.08
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 15(8P11.21) MUTATED | 0 | 164 | 20 | 0 | 0 | 5 | 1 | 8 |
DEL PEAK 15(8P11.21) WILD-TYPE | 1 | 599 | 172 | 6 | 4 | 25 | 16 | 40 |
P value = 0.000376 (logrank test), Q value = 0.0055
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 16(9P23) MUTATED | 316 | 48 | 0.0 - 162.1 (22.3) |
DEL PEAK 16(9P23) WILD-TYPE | 728 | 80 | 0.0 - 234.3 (25.1) |
P value = 0.00267 (Fisher's exact test), Q value = 0.025
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 16(9P23) MUTATED | 21 | 19 | 1 | 0 | 98 | 68 | 1 | 62 | 16 | 19 | 10 | 0 | 4 |
DEL PEAK 16(9P23) WILD-TYPE | 68 | 62 | 7 | 3 | 255 | 177 | 1 | 88 | 13 | 44 | 10 | 1 | 9 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0089
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 16(9P23) MUTATED | 60 | 204 | 37 | 19 |
DEL PEAK 16(9P23) WILD-TYPE | 212 | 412 | 93 | 21 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0072
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 16(9P23) MUTATED | 135 | 101 | 55 | 24 |
DEL PEAK 16(9P23) WILD-TYPE | 366 | 249 | 62 | 51 |
P value = 0.0541 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 879 | 21 |
DEL PEAK 16(9P23) MUTATED | 272 | 11 |
DEL PEAK 16(9P23) WILD-TYPE | 607 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 16(9P23) MUTATED | 0 | 265 | 25 | 3 | 3 | 9 | 5 | 11 |
DEL PEAK 16(9P23) WILD-TYPE | 1 | 498 | 167 | 3 | 1 | 21 | 12 | 37 |
P value = 0.0244 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 16(9P23) MUTATED | 259 | 2.8 (5.0) |
DEL PEAK 16(9P23) WILD-TYPE | 638 | 2.2 (4.5) |
P value = 0.0369 (logrank test), Q value = 0.17
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 17(9P21.3) MUTATED | 354 | 47 | 0.0 - 177.0 (23.1) |
DEL PEAK 17(9P21.3) WILD-TYPE | 690 | 81 | 0.0 - 234.3 (25.1) |
P value = 0.0144 (Fisher's exact test), Q value = 0.084
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 17(9P21.3) MUTATED | 24 | 22 | 2 | 0 | 113 | 75 | 1 | 64 | 17 | 23 | 10 | 0 | 6 |
DEL PEAK 17(9P21.3) WILD-TYPE | 65 | 59 | 6 | 3 | 240 | 170 | 1 | 86 | 12 | 40 | 10 | 1 | 7 |
P value = 0.0023 (Fisher's exact test), Q value = 0.022
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 17(9P21.3) MUTATED | 71 | 225 | 41 | 20 |
DEL PEAK 17(9P21.3) WILD-TYPE | 201 | 391 | 89 | 20 |
P value = 0.00179 (Fisher's exact test), Q value = 0.018
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 17(9P21.3) MUTATED | 159 | 107 | 57 | 30 |
DEL PEAK 17(9P21.3) WILD-TYPE | 342 | 243 | 60 | 45 |
P value = 0.0508 (Fisher's exact test), Q value = 0.21
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
DEL PEAK 17(9P21.3) MUTATED | 351 | 7 |
DEL PEAK 17(9P21.3) WILD-TYPE | 700 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 17(9P21.3) MUTATED | 1 | 297 | 23 | 4 | 3 | 12 | 5 | 13 |
DEL PEAK 17(9P21.3) WILD-TYPE | 0 | 466 | 169 | 2 | 1 | 18 | 12 | 35 |
P value = 0.046 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 17(9P21.3) MUTATED | 289 | 2.6 (4.5) |
DEL PEAK 17(9P21.3) WILD-TYPE | 608 | 2.3 (4.7) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 18(9Q21.11) MUTATED | 0 | 243 | 23 | 2 | 1 | 10 | 3 | 10 |
DEL PEAK 18(9Q21.11) WILD-TYPE | 1 | 520 | 169 | 4 | 3 | 20 | 14 | 38 |
P value = 0.0368 (Fisher's exact test), Q value = 0.17
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 18(9Q21.11) MUTATED | 93 | 199 |
DEL PEAK 18(9Q21.11) WILD-TYPE | 195 | 575 |
P value = 0.0253 (Fisher's exact test), Q value = 0.13
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 19(9Q34.2) MUTATED | 59 | 185 | 32 | 15 |
DEL PEAK 19(9Q34.2) WILD-TYPE | 213 | 431 | 98 | 25 |
P value = 0.013 (Fisher's exact test), Q value = 0.08
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
DEL PEAK 19(9Q34.2) MUTATED | 286 | 7 |
DEL PEAK 19(9Q34.2) WILD-TYPE | 765 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 19(9Q34.2) MUTATED | 0 | 247 | 21 | 4 | 1 | 7 | 3 | 9 |
DEL PEAK 19(9Q34.2) WILD-TYPE | 1 | 516 | 171 | 2 | 3 | 23 | 14 | 39 |
P value = 0.0667 (Fisher's exact test), Q value = 0.24
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 19(9Q34.2) MUTATED | 0 | 17 | 59 | 186 |
DEL PEAK 19(9Q34.2) WILD-TYPE | 1 | 43 | 111 | 550 |
P value = 0.0123 (Fisher's exact test), Q value = 0.078
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 20(10Q23.31) MUTATED | 68 | 189 | 36 | 20 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 204 | 427 | 94 | 20 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0054
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 20(10Q23.31) MUTATED | 0 | 242 | 39 | 5 | 2 | 8 | 1 | 17 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 1 | 521 | 153 | 1 | 2 | 22 | 16 | 31 |
P value = 0.0189 (Fisher's exact test), Q value = 0.1
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 38 | 858 |
DEL PEAK 20(10Q23.31) MUTATED | 5 | 263 |
DEL PEAK 20(10Q23.31) WILD-TYPE | 33 | 595 |
P value = 0.057 (logrank test), Q value = 0.22
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 21(10Q26.3) MUTATED | 312 | 44 | 0.0 - 211.6 (23.1) |
DEL PEAK 21(10Q26.3) WILD-TYPE | 732 | 84 | 0.0 - 234.3 (24.8) |
P value = 0.0249 (Fisher's exact test), Q value = 0.13
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 21(10Q26.3) MUTATED | 65 | 191 | 39 | 18 |
DEL PEAK 21(10Q26.3) WILD-TYPE | 207 | 425 | 91 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 21(10Q26.3) MUTATED | 0 | 251 | 31 | 5 | 2 | 8 | 2 | 15 |
DEL PEAK 21(10Q26.3) WILD-TYPE | 1 | 512 | 161 | 1 | 2 | 22 | 15 | 33 |
P value = 0.00623 (Fisher's exact test), Q value = 0.046
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 38 | 858 |
DEL PEAK 21(10Q26.3) MUTATED | 4 | 262 |
DEL PEAK 21(10Q26.3) WILD-TYPE | 34 | 596 |
P value = 0.0528 (logrank test), Q value = 0.21
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 22(11P15.5) MUTATED | 300 | 42 | 0.0 - 177.0 (23.5) |
DEL PEAK 22(11P15.5) WILD-TYPE | 744 | 86 | 0.0 - 234.3 (24.7) |
P value = 0.0041 (Fisher's exact test), Q value = 0.033
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 22(11P15.5) MUTATED | 58 | 197 | 32 | 15 |
DEL PEAK 22(11P15.5) WILD-TYPE | 214 | 419 | 98 | 25 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00045
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 22(11P15.5) MUTATED | 0 | 244 | 30 | 4 | 1 | 12 | 2 | 10 |
DEL PEAK 22(11P15.5) WILD-TYPE | 1 | 519 | 162 | 2 | 3 | 18 | 15 | 38 |
P value = 0.0173 (Fisher's exact test), Q value = 0.097
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 22(11P15.5) MUTATED | 0 | 19 | 63 | 190 |
DEL PEAK 22(11P15.5) WILD-TYPE | 1 | 41 | 107 | 546 |
P value = 0.0028 (Fisher's exact test), Q value = 0.025
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 23(11Q13.1) MUTATED | 0 | 21 | 48 | 142 |
DEL PEAK 23(11Q13.1) WILD-TYPE | 1 | 39 | 122 | 594 |
P value = 0.0399 (Fisher's exact test), Q value = 0.18
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 24(11Q23.3) MUTATED | 119 | 323 | 74 | 22 |
DEL PEAK 24(11Q23.3) WILD-TYPE | 153 | 293 | 56 | 18 |
P value = 0.052 (Fisher's exact test), Q value = 0.21
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 24(11Q23.3) MUTATED | 236 | 190 | 67 | 33 |
DEL PEAK 24(11Q23.3) WILD-TYPE | 265 | 160 | 50 | 42 |
P value = 0.0644 (Fisher's exact test), Q value = 0.24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
DEL PEAK 24(11Q23.3) MUTATED | 530 | 9 |
DEL PEAK 24(11Q23.3) WILD-TYPE | 521 | 2 |
P value = 0.0142 (Fisher's exact test), Q value = 0.084
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 24(11Q23.3) MUTATED | 1 | 33 | 101 | 350 |
DEL PEAK 24(11Q23.3) WILD-TYPE | 0 | 27 | 69 | 386 |
P value = 0.035 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 25(11Q25) MUTATED | 498 | 57.6 (13.5) |
DEL PEAK 25(11Q25) WILD-TYPE | 549 | 59.5 (12.8) |
P value = 0.0243 (Fisher's exact test), Q value = 0.13
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 25(11Q25) MUTATED | 31 | 31 | 3 | 1 | 163 | 132 | 1 | 85 | 12 | 26 | 10 | 0 | 8 |
DEL PEAK 25(11Q25) WILD-TYPE | 58 | 50 | 5 | 2 | 190 | 113 | 1 | 65 | 17 | 37 | 10 | 1 | 5 |
P value = 0.00327 (Fisher's exact test), Q value = 0.028
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 25(11Q25) MUTATED | 105 | 312 | 70 | 17 |
DEL PEAK 25(11Q25) WILD-TYPE | 167 | 304 | 60 | 23 |
P value = 0.0341 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 25(11Q25) MUTATED | 221 | 180 | 64 | 30 |
DEL PEAK 25(11Q25) WILD-TYPE | 280 | 170 | 53 | 45 |
P value = 0.0307 (Fisher's exact test), Q value = 0.15
nPatients | FEMALE | MALE |
---|---|---|
ALL | 1051 | 11 |
DEL PEAK 25(11Q25) MUTATED | 496 | 9 |
DEL PEAK 25(11Q25) WILD-TYPE | 555 | 2 |
P value = 0.00444 (Fisher's exact test), Q value = 0.035
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 25(11Q25) MUTATED | 1 | 374 | 88 | 5 | 3 | 16 | 5 | 12 |
DEL PEAK 25(11Q25) WILD-TYPE | 0 | 389 | 104 | 1 | 1 | 14 | 12 | 36 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0055
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 25(11Q25) MUTATED | 1 | 29 | 102 | 320 |
DEL PEAK 25(11Q25) WILD-TYPE | 0 | 31 | 68 | 416 |
P value = 0.0049 (Fisher's exact test), Q value = 0.038
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 26(12P13.1) MUTATED | 0 | 154 | 17 | 1 | 0 | 3 | 1 | 6 |
DEL PEAK 26(12P13.1) WILD-TYPE | 1 | 609 | 175 | 5 | 4 | 27 | 16 | 42 |
P value = 0.0361 (Fisher's exact test), Q value = 0.17
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 27(12Q23.1) MUTATED | 36 | 127 | 22 | 10 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 236 | 489 | 108 | 30 |
P value = 0.00331 (Fisher's exact test), Q value = 0.028
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 27(12Q23.1) MUTATED | 0 | 159 | 21 | 3 | 0 | 4 | 0 | 10 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 1 | 604 | 171 | 3 | 4 | 26 | 17 | 38 |
P value = 0.00723 (Fisher's exact test), Q value = 0.053
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 27(12Q23.1) MUTATED | 0 | 13 | 47 | 123 |
DEL PEAK 27(12Q23.1) WILD-TYPE | 1 | 47 | 123 | 613 |
P value = 0.0456 (Fisher's exact test), Q value = 0.2
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 29(13Q14.2) MUTATED | 106 | 303 | 59 | 18 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 166 | 313 | 71 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 29(13Q14.2) MUTATED | 0 | 386 | 65 | 5 | 1 | 12 | 2 | 17 |
DEL PEAK 29(13Q14.2) WILD-TYPE | 1 | 377 | 127 | 1 | 3 | 18 | 15 | 31 |
P value = 0.0402 (logrank test), Q value = 0.18
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 30(14Q24.1) MUTATED | 342 | 51 | 0.0 - 211.6 (24.8) |
DEL PEAK 30(14Q24.1) WILD-TYPE | 702 | 77 | 0.0 - 234.3 (24.3) |
P value = 0.00019 (Fisher's exact test), Q value = 0.0033
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 30(14Q24.1) MUTATED | 65 | 233 | 35 | 11 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 207 | 383 | 95 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 30(14Q24.1) MUTATED | 1 | 292 | 31 | 4 | 2 | 3 | 1 | 11 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 0 | 471 | 161 | 2 | 2 | 27 | 16 | 37 |
P value = 0.0557 (Fisher's exact test), Q value = 0.22
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 30(14Q24.1) MUTATED | 107 | 239 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 181 | 535 |
P value = 0.00077 (Fisher's exact test), Q value = 0.0095
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 30(14Q24.1) MUTATED | 0 | 18 | 77 | 218 |
DEL PEAK 30(14Q24.1) WILD-TYPE | 1 | 42 | 93 | 518 |
P value = 0.00152 (Fisher's exact test), Q value = 0.017
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 31(15Q13.1) MUTATED | 72 | 243 | 41 | 12 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 200 | 373 | 89 | 28 |
P value = 0.0336 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 31(15Q13.1) MUTATED | 190 | 108 | 48 | 20 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 311 | 242 | 69 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 31(15Q13.1) MUTATED | 1 | 300 | 38 | 4 | 1 | 9 | 1 | 14 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 0 | 463 | 154 | 2 | 3 | 21 | 16 | 34 |
P value = 0.0502 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 31(15Q13.1) MUTATED | 114 | 255 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 174 | 519 |
P value = 0.0403 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 897 | 2.4 (4.7) |
DEL PEAK 31(15Q13.1) MUTATED | 314 | 2.2 (4.8) |
DEL PEAK 31(15Q13.1) WILD-TYPE | 583 | 2.5 (4.6) |
P value = 0.052 (Fisher's exact test), Q value = 0.21
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 31(15Q13.1) MUTATED | 0 | 23 | 73 | 242 |
DEL PEAK 31(15Q13.1) WILD-TYPE | 1 | 37 | 97 | 494 |
P value = 0.000601 (Wilcoxon-test), Q value = 0.0077
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 32(16Q24.3) MUTATED | 669 | 59.7 (12.9) |
DEL PEAK 32(16Q24.3) WILD-TYPE | 378 | 56.7 (13.3) |
P value = 0.0651 (Fisher's exact test), Q value = 0.24
nPatients | 0 | 1 |
---|---|---|
ALL | 879 | 21 |
DEL PEAK 32(16Q24.3) MUTATED | 561 | 9 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 318 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 32(16Q24.3) MUTATED | 0 | 460 | 172 | 3 | 1 | 20 | 3 | 19 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 1 | 303 | 20 | 3 | 3 | 10 | 14 | 29 |
P value = 0.00412 (Fisher's exact test), Q value = 0.033
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 32(16Q24.3) MUTATED | 1 | 34 | 89 | 483 |
DEL PEAK 32(16Q24.3) WILD-TYPE | 0 | 26 | 81 | 253 |
P value = 0.0023 (Wilcoxon-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 33(17P12) MUTATED | 628 | 57.7 (13.0) |
DEL PEAK 33(17P12) WILD-TYPE | 419 | 60.1 (13.3) |
P value = 0.0625 (Fisher's exact test), Q value = 0.23
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 33(17P12) MUTATED | 146 | 388 | 79 | 22 |
DEL PEAK 33(17P12) WILD-TYPE | 126 | 228 | 51 | 18 |
P value = 0.00883 (Fisher's exact test), Q value = 0.061
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 33(17P12) MUTATED | 0 | 482 | 99 | 5 | 2 | 18 | 6 | 25 |
DEL PEAK 33(17P12) WILD-TYPE | 1 | 281 | 93 | 1 | 2 | 12 | 11 | 23 |
P value = 0.0551 (Fisher's exact test), Q value = 0.22
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 33(17P12) MUTATED | 1 | 44 | 107 | 428 |
DEL PEAK 33(17P12) WILD-TYPE | 0 | 16 | 63 | 308 |
P value = 0.000476 (Wilcoxon-test), Q value = 0.0066
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 34(17Q21.31) MUTATED | 354 | 56.8 (13.3) |
DEL PEAK 34(17Q21.31) WILD-TYPE | 693 | 59.5 (13.0) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 34(17Q21.31) MUTATED | 0 | 290 | 37 | 4 | 2 | 11 | 1 | 16 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 1 | 473 | 155 | 2 | 2 | 19 | 16 | 32 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0055
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 34(17Q21.31) MUTATED | 0 | 34 | 67 | 232 |
DEL PEAK 34(17Q21.31) WILD-TYPE | 1 | 26 | 103 | 504 |
P value = 0.0617 (logrank test), Q value = 0.23
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 1044 | 128 | 0.0 - 234.3 (24.5) |
DEL PEAK 35(18Q23) MUTATED | 340 | 45 | 0.0 - 211.6 (21.8) |
DEL PEAK 35(18Q23) WILD-TYPE | 704 | 83 | 0.2 - 234.3 (25.8) |
P value = 0.0673 (Fisher's exact test), Q value = 0.24
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 35(18Q23) MUTATED | 23 | 29 | 0 | 0 | 113 | 74 | 0 | 55 | 15 | 28 | 6 | 0 | 3 |
DEL PEAK 35(18Q23) WILD-TYPE | 66 | 52 | 8 | 3 | 240 | 171 | 2 | 95 | 14 | 35 | 14 | 1 | 10 |
P value = 0.0194 (Fisher's exact test), Q value = 0.11
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 35(18Q23) MUTATED | 74 | 212 | 42 | 20 |
DEL PEAK 35(18Q23) WILD-TYPE | 198 | 404 | 88 | 20 |
P value = 0.0011 (Fisher's exact test), Q value = 0.013
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 35(18Q23) MUTATED | 1 | 271 | 52 | 3 | 2 | 8 | 0 | 11 |
DEL PEAK 35(18Q23) WILD-TYPE | 0 | 492 | 140 | 3 | 2 | 22 | 17 | 37 |
P value = 0.00331 (Wilcoxon-test), Q value = 0.028
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 36(19P13.3) MUTATED | 348 | 57.0 (13.5) |
DEL PEAK 36(19P13.3) WILD-TYPE | 699 | 59.4 (12.9) |
P value = 0.0422 (Fisher's exact test), Q value = 0.19
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 36(19P13.3) MUTATED | 78 | 227 | 36 | 15 |
DEL PEAK 36(19P13.3) WILD-TYPE | 194 | 389 | 94 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 36(19P13.3) MUTATED | 1 | 295 | 24 | 5 | 1 | 9 | 5 | 15 |
DEL PEAK 36(19P13.3) WILD-TYPE | 0 | 468 | 168 | 1 | 3 | 21 | 12 | 33 |
P value = 0.00134 (Fisher's exact test), Q value = 0.015
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 60 | 170 | 736 |
DEL PEAK 36(19P13.3) MUTATED | 0 | 28 | 72 | 223 |
DEL PEAK 36(19P13.3) WILD-TYPE | 1 | 32 | 98 | 513 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00024
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 37(19Q13.32) MUTATED | 0 | 181 | 9 | 3 | 1 | 6 | 4 | 7 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 1 | 582 | 183 | 3 | 3 | 24 | 13 | 41 |
P value = 0.0154 (Fisher's exact test), Q value = 0.089
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 37(19Q13.32) MUTATED | 72 | 140 |
DEL PEAK 37(19Q13.32) WILD-TYPE | 216 | 634 |
P value = 0.061 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1047 | 58.6 (13.2) |
DEL PEAK 38(20P13) MUTATED | 156 | 56.8 (12.2) |
DEL PEAK 38(20P13) WILD-TYPE | 891 | 59.0 (13.3) |
P value = 3e-05 (Fisher's exact test), Q value = 0.00064
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 38(20P13) MUTATED | 1 | 136 | 10 | 2 | 0 | 2 | 1 | 7 |
DEL PEAK 38(20P13) WILD-TYPE | 0 | 627 | 182 | 4 | 4 | 28 | 16 | 41 |
P value = 0.00983 (Fisher's exact test), Q value = 0.066
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 89 | 81 | 8 | 3 | 353 | 245 | 2 | 150 | 29 | 63 | 20 | 1 | 13 |
DEL PEAK 39(21Q11.2) MUTATED | 12 | 11 | 1 | 0 | 67 | 51 | 1 | 38 | 12 | 8 | 7 | 1 | 3 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 77 | 70 | 7 | 3 | 286 | 194 | 1 | 112 | 17 | 55 | 13 | 0 | 10 |
P value = 0.0121 (Fisher's exact test), Q value = 0.077
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 272 | 616 | 130 | 40 |
DEL PEAK 39(21Q11.2) MUTATED | 41 | 136 | 21 | 13 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 231 | 480 | 109 | 27 |
P value = 0.0142 (Fisher's exact test), Q value = 0.084
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 501 | 350 | 117 | 75 |
DEL PEAK 39(21Q11.2) MUTATED | 88 | 73 | 36 | 12 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 413 | 277 | 81 | 63 |
P value = 0.0564 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 879 | 21 |
DEL PEAK 39(21Q11.2) MUTATED | 178 | 8 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 701 | 13 |
P value = 0.00042 (Fisher's exact test), Q value = 0.006
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 39(21Q11.2) MUTATED | 0 | 172 | 19 | 2 | 2 | 9 | 2 | 6 |
DEL PEAK 39(21Q11.2) WILD-TYPE | 1 | 591 | 173 | 4 | 2 | 21 | 15 | 42 |
P value = 0.00136 (Fisher's exact test), Q value = 0.015
nPatients | INFILTRATING CARCINOMA NOS | INFILTRATING DUCTAL CARCINOMA | INFILTRATING LOBULAR CARCINOMA | MEDULLARY CARCINOMA | METAPLASTIC CARCINOMA | MIXED HISTOLOGY (PLEASE SPECIFY) | MUCINOUS CARCINOMA | OTHER SPECIFY |
---|---|---|---|---|---|---|---|---|
ALL | 1 | 763 | 192 | 6 | 4 | 30 | 17 | 48 |
DEL PEAK 40(22Q13.32) MUTATED | 1 | 353 | 87 | 3 | 2 | 18 | 1 | 14 |
DEL PEAK 40(22Q13.32) WILD-TYPE | 0 | 410 | 105 | 3 | 2 | 12 | 16 | 34 |
P value = 0.00444 (Fisher's exact test), Q value = 0.035
nPatients | NO | YES |
---|---|---|
ALL | 288 | 774 |
DEL PEAK 40(22Q13.32) MUTATED | 151 | 329 |
DEL PEAK 40(22Q13.32) WILD-TYPE | 137 | 445 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/15086288/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BRCA-TP/15076769/BRCA-TP.merged_data.txt
-
Number of patients = 1062
-
Number of significantly focal cnvs = 69
-
Number of selected clinical features = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.