PARADIGM pathway analysis of mRNASeq expression data
Bladder Urothelial Carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1QN6637
- Overview
+ Introduction
- Summary

There were 63 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
FOXM1 transcription factor network 154
Glypican 2 network 116
Aurora B signaling 104
Signaling events regulated by Ret tyrosine kinase 85
Calcineurin-regulated NFAT-dependent transcription in lymphocytes 84
Signaling events mediated by the Hedgehog family 72
Nongenotropic Androgen signaling 71
Endothelins 69
IL4-mediated signaling events 66
Reelin signaling pathway 59
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data