PARADIGM pathway analysis of mRNASeq expression data
Stomach and Esophageal carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1X066HX
- Overview
+ Introduction
- Summary

There were 43 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
FOXA2 and FOXA3 transcription factor networks 139
Reelin signaling pathway 124
TCGA08_retinoblastoma 124
Syndecan-1-mediated signaling events 121
IL23-mediated signaling events 117
Ephrin B reverse signaling 96
Osteopontin-mediated events 88
Lissencephaly gene (LIS1) in neuronal migration and development 80
EPHB forward signaling 79
IL4-mediated signaling events 76
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data