PARADIGM pathway analysis of mRNASeq expression data
Thyroid Adenocarcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C19P315J
- Overview
+ Introduction
- Summary

There were 48 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
Ephrin A reverse signaling 256
Signaling events mediated by Stem cell factor receptor (c-Kit) 169
Signaling events regulated by Ret tyrosine kinase 157
TCGA08_retinoblastoma 140
Reelin signaling pathway 122
Calcineurin-regulated NFAT-dependent transcription in lymphocytes 119
Noncanonical Wnt signaling pathway 112
Wnt signaling 108
IL4-mediated signaling events 104
PDGFR-alpha signaling pathway 99
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data