PARADIGM pathway analysis of mRNASeq expression data
Cholangiocarcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1P26XGP
- Overview
+ Introduction
- Summary

There were 32 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
FOXA2 and FOXA3 transcription factor networks 18
HIF-1-alpha transcription factor network 12
Plasma membrane estrogen receptor signaling 12
Class IB PI3K non-lipid kinase events 12
Syndecan-4-mediated signaling events 11
Signaling events regulated by Ret tyrosine kinase 10
IGF1 pathway 9
Nongenotropic Androgen signaling 8
Reelin signaling pathway 7
EPO signaling pathway 6
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data