PARADIGM pathway analysis of mRNASeq expression data
Liver Hepatocellular Carcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): PARADIGM pathway analysis of mRNASeq expression data. Broad Institute of MIT and Harvard. doi:10.7908/C1513XMB
- Overview
+ Introduction
- Summary

There were 69 significant pathways identified in this analysis.

Table 1.  Get Full Table Top 10 out of 131 pathways in order of significance.

Pathway.Name Avg.Num.Perturbations
Plasma membrane estrogen receptor signaling 110
PDGFR-alpha signaling pathway 97
Signaling events regulated by Ret tyrosine kinase 95
FOXM1 transcription factor network 94
Nongenotropic Androgen signaling 84
Glypican 2 network 81
Calcineurin-regulated NFAT-dependent transcription in lymphocytes 76
EPO signaling pathway 75
HIF-1-alpha transcription factor network 72
p75(NTR)-mediated signaling 72
- Results
+ Summary Table
+ Inferred Pathway Levels Matrix
+ Methods & Data